Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3

.gitlab-ci.yml

@@ -7,9 +7,9 @@ stages:
   - compilePETScGNU
   - prepareSpectral
   - spectral
-  - compileMarc2018_1
+  - compileMarc
   - marc
-  - compileAbaqus2017
+  - compileAbaqus
   - example
   - performance
   - createPackage
@@ -51,39 +51,37 @@ variables:
   # Names of module files to load
   # ===============================================================================================
   # ++++++++++++ Compiler ++++++++++++++++++++++++++++++++++++++++++++++
-  IntelCompiler16_0:               "Compiler/Intel/16.0 Libraries/IMKL/2016"
-  IntelCompiler16_4:               "Compiler/Intel/16.4 Libraries/IMKL/2016-4"
-  IntelCompiler17_0:               "Compiler/Intel/17.0 Libraries/IMKL/2017"
-  IntelCompiler18_1:               "Compiler/Intel/18.1 Libraries/IMKL/2018"
-  GNUCompiler7_3:                  "Compiler/GNU/7.3"
+  IntelCompiler16_4:               "Compiler/Intel/16.4 Libraries/IMKL/2016"
+  IntelCompiler17_8:               "Compiler/Intel/17.8 Libraries/IMKL/2017"
+  IntelCompiler18_4:               "Compiler/Intel/18.4 Libraries/IMKL/2018"
+  GNUCompiler8_2:                  "Compiler/GNU/8.2"
   # ------------ Defaults ----------------------------------------------
-  IntelCompiler:                   "$IntelCompiler18_1"
-  GNUCompiler:                     "$GNUCompiler7_3"
+  IntelCompiler:                   "$IntelCompiler18_4"
+  GNUCompiler:                     "$GNUCompiler8_2"
   # ++++++++++++ MPI +++++++++++++++++++++++++++++++++++++++++++++++++++
-  MPICH3_2Intel18_1:               "MPI/Intel/18.1/MPICH/3.2.1"
-  MPICH3_2GNU7_3:                  "MPI/GNU/7.3/MPICH/3.2.1"
+  IMPI2018Intel18_4:               "MPI/Intel/18.4/IntelMPI/2018"
+  MPICH3_3GNU8_2:                  "MPI/GNU/8.2/MPICH/3.3"
   # ------------ Defaults ----------------------------------------------
-  MPICH_Intel:                     "$MPICH3_2Intel18_1"
-  MPICH_GNU:                       "$MPICH3_2GNU7_3"
+  MPICH_Intel:                     "$IMPI2018Intel18_4"
+  MPICH_GNU:                       "$MPICH3_3GNU8_2"
   # ++++++++++++ PETSc +++++++++++++++++++++++++++++++++++++++++++++++++
-  PETSc3_10_0MPICH3_2Intel18_1:    "Libraries/PETSc/3.10.0/Intel-18.1-MPICH-3.2.1"
-  PETSc3_10_0MPICH3_2GNU7_3:       "Libraries/PETSc/3.10.0/GNU-7.3-MPICH-3.2.1"
+  PETSc3_10_3IMPI2018Intel18_4:    "Libraries/PETSc/3.10.3/Intel-18.4-IntelMPI-2018"
+  PETSc3_10_3MPICH3_3GNU8_2:       "Libraries/PETSc/3.10.3/GNU-8.2-MPICH-3.3"
   # ------------ Defaults ----------------------------------------------
-  PETSc_MPICH_Intel:               "$PETSc3_10_0MPICH3_2Intel18_1"
-  PETSc_MPICH_GNU:                 "$PETSc3_10_0MPICH3_2GNU7_3"
+  PETSc_MPICH_Intel:               "$PETSc3_10_3IMPI2018Intel18_4"
+  PETSc_MPICH_GNU:                 "$PETSc3_10_3MPICH3_3GNU8_2"
   # ++++++++++++ FEM +++++++++++++++++++++++++++++++++++++++++++++++++++
-  Abaqus2017:                      "FEM/Abaqus/2017"
+  Abaqus2019:                      "FEM/Abaqus/2019"
   MSC2018_1:                       "FEM/MSC/2018.1"
-  MSC2017:                         "FEM/MSC/2017"
   # ------------ Defaults ----------------------------------------------
-  Abaqus:                          "$Abaqus2017"
+  Abaqus:                          "$Abaqus2019"
   MSC:                             "$MSC2018_1"
-  IntelMarc:                       "$IntelCompiler17_0"
+  IntelMarc:                       "$IntelCompiler17_8"
   IntelAbaqus:                     "$IntelCompiler16_4"
   # ++++++++++++ Documentation +++++++++++++++++++++++++++++++++++++++++
-  Doxygen1_8_13:                   "Documentation/Doxygen/1.8.13"
+  Doxygen1_8_15:                   "Documentation/Doxygen/1.8.15"
   # ------------ Defaults ----------------------------------------------
-  Doxygen:                         "$Doxygen1_8_13"
+  Doxygen:                         "$Doxygen1_8_15"
 
 
 ###################################################################################################
@@ -158,6 +156,13 @@ Post_AverageDown:
     - master
     - release
 
+Post_ASCIItable:
+  stage: postprocessing
+  script: ASCIItable/test.py
+  except:
+    - master
+    - release
+
 Post_General:
   stage: postprocessing
   script: PostProcessing/test.py
@@ -383,9 +388,9 @@ TextureComponents:
 
 ###################################################################################################
 Marc_compileIfort2018_1:
-  stage: compileMarc2018_1
+  stage: compileMarc
   script:
-    - module load $IntelCompiler17_0 $MSC2018_1
+    - module load $IntelMarc $MSC
     - Marc_compileIfort/test.py -m 2018.1
   except:
     - master
@@ -430,11 +435,11 @@ J2_plasticBehavior:
     - release
 
 ###################################################################################################
-Abaqus_compile2017:
-  stage: compileAbaqus2017
+Abaqus_compile:
+  stage: compileAbaqus
   script:
-    - module load $IntelCompiler16_4 $Abaqus2017
-    - Abaqus_compileIfort/test.py -a 2017
+    - module load $IntelAbaqus $Abaqus
+    - Abaqus_compileIfort/test.py
   except:
     - master
     - release
@@ -477,24 +482,40 @@ AbaqusStd:
   script:
     - module load $IntelCompiler $MPICH_Intel $PETSc_MPICH_Intel $Doxygen
     - $DAMASKROOT/PRIVATE/documenting/runDoxygen.sh $DAMASKROOT abaqus
-  only:
-    - development
+  except:
+    - master
+    - release
 
 Marc:
   stage: createDocumentation
   script:
     - module load $IntelCompiler $MPICH_Intel $PETSc_MPICH_Intel $Doxygen
     - $DAMASKROOT/PRIVATE/documenting/runDoxygen.sh $DAMASKROOT marc
-  only:
-    - development
+  except:
+    - master
+    - release
 
 Spectral:
   stage: createDocumentation
   script:
     - module load $IntelCompiler $MPICH_Intel $PETSc_MPICH_Intel $Doxygen
     - $DAMASKROOT/PRIVATE/documenting/runDoxygen.sh $DAMASKROOT spectral
-  only:
-    - development
+  except:
+    - master
+    - release
+
+Processing:
+  stage: createDocumentation
+  script:
+    - cd $DAMASKROOT/processing/pre
+    - rm 3DRVEfrom2Dang.py abq_addUserOutput.py marc_addUserOutput.py
+    - $DAMASKROOT/PRIVATE/documenting/scriptHelpToWiki.py --debug *.py
+    - cd $DAMASKROOT/processing/post
+    - rm marc_to_vtk.py vtk2ang.py
+    - $DAMASKROOT/PRIVATE/documenting/scriptHelpToWiki.py --debug *.py
+  except:
+    - master
+    - release
 
 ##################################################################################################
 backupData:
@@ -503,11 +524,10 @@ backupData:
     - cd $TESTROOT/performance                                                                      # location of new runtime results
     - git commit -am"${CI_PIPELINE_ID}_${CI_COMMIT_SHA}"
     - mkdir $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}
-    - cp $TESTROOT/performance/time.txt $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
     - mv $TESTROOT/performance/time.png $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
-    - cp $TESTROOT/performance/memory.txt $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
     - mv $TESTROOT/performance/memory.png $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
     - mv $DAMASKROOT/PRIVATE/documenting/DAMASK_* $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
+    - mv $DAMASKROOT/processing $BACKUP/${CI_PIPELINE_ID}_${CI_COMMIT_SHA}/
   only:
     - development
 

CMakeLists.txt

@@ -445,6 +445,33 @@ elseif(CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
 
   # Additional options
   # -fdefault-integer-8: Use it to set precision to 8 bytes for integer, don't use it for the standard case of pInt=4 (there is no -fdefault-integer-4)
+
+
+###################################################################################################
+# PGI Compiler
+###################################################################################################
+elseif(CMAKE_Fortran_COMPILER_ID STREQUAL "PGI")
+
+  if (OPTIMIZATION STREQUAL "OFF")
+    set (OPTIMIZATION_FLAGS "-O0"       )
+  elseif (OPTIMIZATION STREQUAL "DEFENSIVE")
+    set (OPTIMIZATION_FLAGS "-O2")
+  elseif (OPTIMIZATION STREQUAL "AGGRESSIVE")
+    set (OPTIMIZATION_FLAGS "-O3")
+  endif ()
+
+
+#------------------------------------------------------------------------------------------------
+# Fine tuning compilation options
+  set (COMPILE_FLAGS "${COMPILE_FLAGS} -Mpreprocess")
+  # preprocessor
+
+  set (STANDARD_CHECK "-Mallocatable=03")
+
+#------------------------------------------------------------------------------------------------
+# Runtime debugging
+  set (DEBUG_FLAGS "${DEBUG_FLAGS} -g")
+  # Includes debugging information in the object module; sets the optimization level to zero unless a -⁠O option is present on the command line
 else ()
   message (FATAL_ERROR "Compiler type (CMAKE_Fortran_COMPILER_ID) not recognized")
 endif ()

CONFIG

@@ -8,6 +8,6 @@ set DAMASK_NUM_THREADS    = 4
 set MSC_ROOT              = /opt/msc
 set MARC_VERSION          = 2018.1
 
-set ABAQUS_VERSION        = 2017
+set ABAQUS_VERSION        = 2019
 
 set DAMASK_HDF5           = OFF

PRIVATE

@@ -1 +1 @@
-Subproject commit 406d482f8059b4459634af729ce85491a9a3245c
+Subproject commit e86418193f202364e068de2dffee36f99c846856

README

@@ -10,3 +10,4 @@ Germany
 
 Email: DAMASK@mpie.de
 https://damask.mpie.de
+https://magit1.mpie.de

VERSION

@@ -1 +1 @@
-v2.0.2-1667-g6b66563b
+v2.0.2-1837-g3bec76e7

processing/post/addAPS34IDEstrainCoords.py

@@ -14,19 +14,14 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Transform X,Y,Z,F APS BeamLine 34 coordinates to x,y,z APS strain coordinates.
 
 """, version = scriptID)
 
-parser.add_option('-f',
-                  '--frame',
-                  dest='frame',
-                  metavar='string',
-                  help='APS X,Y,Z coords')
-parser.add_option('--depth',
-                  dest='depth',
-                  metavar='string',
+parser.add_option('-f','--frame',dest='frame', metavar='string',
+                                 help='label of APS X,Y,Z coords')
+parser.add_option('--depth',     dest='depth',          metavar='string',
                                  help='depth')
 
 (options,filenames) = parser.parse_args()

processing/post/addCalculation.py

@@ -18,7 +18,7 @@ def listify(x):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add or alter column(s) with derived values according to user-defined arithmetic operation between column(s).
 Column labels are tagged by '#label#' in formulas. Use ';' for ',' in functions.
 Numpy is available as 'np'.
@@ -41,10 +41,7 @@ parser.add_option('-f','--formula',
 
 parser.add_option('-c','--condition',
                   dest   = 'condition', metavar='string',
-                  help   = 'condition to alter existing column data')
-
-parser.set_defaults(condition = None,
-                   )
+                  help   = 'condition to alter existing column data (optional)')
 
 (options,filenames) = parser.parse_args()
 

processing/post/addCauchy.py

@@ -13,8 +13,8 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
-Add column(s) containing Cauchy stress based on given column(s) of deformation gradient and first Piola--Kirchhoff stress.
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
+Add column containing Cauchy stress based on deformation gradient and first Piola--Kirchhoff stress.
 
 """, version = scriptID)
 

processing/post/addCompatibilityMismatch.py

@@ -209,7 +209,7 @@ def shapeMismatch(size,F,nodes,centres):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options file[s]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing the shape and volume mismatch resulting from given deformation gradient.
 Operates on periodic three-dimensional x,y,z-ordered data sets.
 

processing/post/addCumulative.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add cumulative (sum of first to current row) values for given label(s).
 """, version = scriptID)
 
@@ -22,12 +22,9 @@ parser.add_option('-l','--label',
                   action = 'extend', metavar = '<string LIST>',
                   help = 'columns to cumulate')
 
-parser.set_defaults(label = [],
-                   )
-                    
 (options,filenames) = parser.parse_args()
 
-if len(options.label) == 0:
+if options.label is None:
   parser.error('no data column(s) specified.')
 
 # --- loop over input files -------------------------------------------------------------------------

processing/post/addCurl.py

@@ -49,14 +49,14 @@ def curlFFT(geomdim,field):
 
   curl_fourier = np.einsum(einsums[n],e,k_s,field_fourier)*TWOPIIMG
 
-  return np.fft.irfftn(curl_fourier,s=shapeFFT,axes=(0,1,2)).reshape([N,n])
+  return np.fft.irfftn(curl_fourier,axes=(0,1,2),s=shapeFFT).reshape([N,n])
 
 
 # --------------------------------------------------------------------
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog option(s) [ASCIItable(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing curl of requested column(s).
 Operates on periodic ordered three-dimensional data sets
 of vector and tensor fields.

processing/post/addDerivative.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -34,7 +34,7 @@ def derivative(coordinates,what):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing numerical derivative of requested column(s) with respect to given coordinates.
 
 """, version = scriptID)

processing/post/addDeterminant.py

@@ -20,7 +20,7 @@ def determinant(m):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing determinant of requested tensor column(s).
 
 """, version = scriptID)

processing/post/addDeviator.py

@@ -23,7 +23,7 @@ def deviator(m,spherical = False):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(2)]', description = """
 Add column(s) containing deviator of requested tensor column(s).
 
 """, version = scriptID)

processing/post/addDisplacement.py

@@ -87,7 +87,7 @@ def displacementFluctFFT(F,grid,size,nodal=False,transformed=False):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog [options] [ASCIItable(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add displacments resulting from deformation gradient field.
 Operates on periodic three-dimensional x,y,z-ordered data sets.
 Outputs at cell centers or cell nodes (into separate file).
@@ -111,7 +111,6 @@ parser.add_option('--nodal',
 
 parser.set_defaults(defgrad = 'f',
                     pos     = 'pos',
-                    nodal   = False,
                    )
 
 (options,filenames) = parser.parse_args()

processing/post/addDivergence.py

@@ -45,7 +45,7 @@ def divFFT(geomdim,field):
 
   div_fourier = np.einsum(einsums[n],k_s,field_fourier)*TWOPIIMG
 
-  return np.fft.irfftn(div_fourier,s=shapeFFT,axes=(0,1,2)).reshape([N,n//3])
+  return np.fft.irfftn(div_fourier,axes=(0,1,2),s=shapeFFT).reshape([N,n//3])
 
 
 # --------------------------------------------------------------------

processing/post/addEhkl.py

@@ -30,7 +30,7 @@ def E_hkl(stiffness,vec):   # stiffness = (c11,c12,c44)
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 in consecutive columns.
 
 """, version = scriptID)

processing/post/addEuclideanDistance.py

@@ -83,7 +83,7 @@ neighborhoods = {
                                       ])
                 }
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing Euclidean distance to grain structural features: boundaries, triple lines, and quadruple points.
 
 """, version = scriptID)

processing/post/addGaussian.py

@@ -15,7 +15,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog option(s) [ASCIItable(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog option [ASCIItable(s)]', description = """
 Add column(s) containing Gaussian filtered values of requested column(s).
 Operates on periodic and non-periodic ordered three-dimensional data sets.
 For details see scipy.ndimage documentation.
@@ -34,12 +34,12 @@ parser.add_option('-o','--order',
                   dest = 'order',
                   type = int,
                   metavar = 'int',
-                  help = 'order of the filter')
+                  help = 'order of the filter [%default]')
 parser.add_option('--sigma',
                   dest = 'sigma',
                   type = float,
                   metavar = 'float',
-                  help = 'standard deviation')
+                  help = 'standard deviation [%default]')
 parser.add_option('--periodic',
                   dest = 'periodic',
                   action = 'store_true',
@@ -50,7 +50,6 @@ parser.add_option('--periodic',
 parser.set_defaults(pos = 'pos',
                     order = 0,
                     sigma = 1,
-                    periodic = False,
                    )
 
 (options,filenames) = parser.parse_args()

processing/post/addGradient.py

@@ -45,14 +45,14 @@ def gradFFT(geomdim,field):
   k_s = np.concatenate((ki[:,:,:,None],kj[:,:,:,None],kk[:,:,:,None]),axis = 3).astype('c16')                           
   grad_fourier = np.einsum(einsums[n],field_fourier,k_s)*TWOPIIMG
 
-  return np.fft.irfftn(grad_fourier,s=shapeFFT,axes=(0,1,2)).reshape([N,3*n])
+  return np.fft.irfftn(grad_fourier,axes=(0,1,2),s=shapeFFT).reshape([N,3*n])
 
 
 # --------------------------------------------------------------------
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog option(s) [ASCIItable(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog option [ASCIItable(s)]', description = """
 Add column(s) containing gradient of requested column(s).
 Operates on periodic ordered three-dimensional data sets
 of vector and scalar fields.

processing/post/addGrainID.py

@@ -28,9 +28,9 @@ parser.add_option('-d',
                   help = 'disorientation threshold in degrees [%default]')
 parser.add_option('-s',
                   '--symmetry',
-                  dest = 'symmetry',
+                  dest = 'symmetry', type = 'choice', choices = damask.Symmetry.lattices[1:],
                   metavar = 'string',
-                  help = 'crystal symmetry [%default]')
+                  help = 'crystal symmetry [%default] {{{}}} '.format(', '.join(damask.Symmetry.lattices[1:])))
 parser.add_option('-o',
                   '--orientation',
                   dest = 'quaternion',
@@ -49,7 +49,7 @@ parser.add_option('--quiet',
 parser.set_defaults(disorientation = 5,
                     verbose = True,
                     quaternion = 'orientation',
-                    symmetry = 'cubic',
+                    symmetry = damask.Symmetry.lattices[-1],
                     pos      = 'pos',
                    )
 

processing/post/addIPFcolor.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add RGB color value corresponding to TSL-OIM scheme for inverse pole figures.
 
 """, version = scriptID)

processing/post/addIndexed.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add data in column(s) of mapped ASCIItable selected from the row indexed by the value in a mapping column.
 Row numbers start at 1.
 

processing/post/addInfo.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options file[s]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add info lines to ASCIItable header.
 
 """, version = scriptID)
@@ -23,11 +23,12 @@ parser.add_option('-i',
                   dest = 'info', action = 'extend', metavar = '<string LIST>',
                   help    = 'items to add')
 
-parser.set_defaults(info = [],
-                   )
 
 (options,filenames) = parser.parse_args()
 
+if options.info is None:
+  parser.error('no info specified.')
+
 # --- loop over input files ------------------------------------------------------------------------
 
 if filenames == []: filenames = [None]

processing/post/addLinked.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add data of selected column(s) from (first) row of linked ASCIItable that shares the linking column value.
 
 """, version = scriptID)
@@ -21,7 +21,7 @@ Add data of selected column(s) from (first) row of linked ASCIItable that shares
 parser.add_option('--link',
                   dest = 'link', nargs = 2,
                   type = 'string', metavar = 'string string',
-                  help = 'column labels containing linked values')
+                  help = 'column labels of table and linked table containing linking values')
 parser.add_option('-l','--label',
                   dest = 'label',
                   action = 'extend', metavar = '<string LIST>',
@@ -105,7 +105,8 @@ for name in filenames:
   outputAlive = True
   while outputAlive and table.data_read():                                                          # read next data line of ASCII table
     try:
-      table.data_append(data[np.argwhere(np.all((map(float,table.data[myLink:myLink+myLinkDim]) - index)==0,axis=1))[0]])  # add data of first matching line
+      table.data_append(data[np.argwhere(np.all((list(map(float,table.data[myLink:myLink+myLinkDim])) - index)==0,
+                                                 axis=1))[0]])                                      # add data of first matching line
     except IndexError:
       table.data_append(np.nan*np.ones_like(data[0]))                                               # or add NaNs
     outputAlive = table.data_write()                                                                # output processed line

processing/post/addMises.py

@@ -24,7 +24,7 @@ def Mises(what,tensor):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add vonMises equivalent values for symmetric part of requested strains and/or stresses.
 
 """, version = scriptID)
@@ -38,13 +38,9 @@ parser.add_option('-s','--stress',
                   action = 'extend', metavar = '<string LIST>',
                   help = 'heading(s) of columns containing stress tensors')
 
-parser.set_defaults(strain = [],
-                    stress = [],
-                   )
-
 (options,filenames) = parser.parse_args()
 
-if len(options.stress+options.strain) == 0:
+if options.stress is None and options.strain is None:
   parser.error('no data column specified...')
 
 # --- loop over input files -------------------------------------------------------------------------

processing/post/addNorm.py

@@ -9,6 +9,7 @@ scriptName = os.path.splitext(os.path.basename(__file__))[0]
 scriptID   = ' '.join([scriptName,damask.version])
 
 # definition of element-wise p-norms for matrices
+# ToDo: better use numpy.linalg.norm
 
 def norm(which,object):
 
@@ -18,12 +19,14 @@ def norm(which,object):
     return math.sqrt(sum([x*x for x in object]))
   elif which == 'Max':                                                                              # p = inf
     return max(map(abs, object))
+  else:
+    return -1
 
 # --------------------------------------------------------------------
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing norm of requested column(s) being either vectors or tensors.
 
 """, version = scriptID)
@@ -43,6 +46,8 @@ parser.set_defaults(norm = 'frobenius',
 
 (options,filenames) = parser.parse_args()
 
+if options.norm.lower() not in normChoices:
+  parser.error('invalid norm ({}) specified.'.format(options.norm))
 if options.label is None:
   parser.error('no data column specified.')
 

processing/post/addOrientations.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add quaternion and/or Bunge Euler angle representation of crystal lattice orientation.
 Orientation is given by quaternion, Euler angles, rotation matrix, or crystal frame coordinates
 (i.e. component vectors of rotation matrix).
@@ -43,12 +43,12 @@ parser.add_option('-R',
                   '--labrotation',
                   dest='labrotation',
                   type = 'float', nargs = 4, metavar = ' '.join(['float']*4),
-                  help = 'angle and axis of additional lab frame rotation')
+                  help = 'angle and axis of additional lab frame rotation [%default]')
 parser.add_option('-r',
                   '--crystalrotation',
                   dest='crystalrotation',
                   type = 'float', nargs = 4, metavar = ' '.join(['float']*4),
-                  help = 'angle and axis of additional crystal frame rotation')
+                  help = 'angle and axis of additional crystal frame rotation [%default]')
 parser.add_option('--eulers',
                   dest = 'eulers',
                   metavar = 'string',
@@ -81,7 +81,6 @@ parser.add_option('-z',
 parser.set_defaults(output = [],
                     labrotation     = (0.,1.,0.,0.),                                                # no rotation about 1,0,0
                     crystalrotation = (0.,1.,0.,0.),                                                # no rotation about 1,0,0
-                    degrees = False,
                    )
 
 (options, filenames) = parser.parse_args()

processing/post/addPK2.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing Second Piola--Kirchhoff stress based on given column(s) of deformation
 gradient and first Piola--Kirchhoff stress.
 

processing/post/addPole.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add coordinates of stereographic projection of given direction (pole) in crystal frame.
 
 """, version = scriptID)
@@ -35,7 +35,6 @@ parser.add_option('-o',
 
 parser.set_defaults(pole = (1.0,0.0,0.0),
                     quaternion = 'orientation',
-                    polar   = False,
                    )
 
 (options, filenames) = parser.parse_args()

processing/post/addSchmidfactors.py

@@ -103,7 +103,7 @@ slipSystems = {
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add columns listing Schmid factors (and optional trace vector of selected system) for given Euler angles.
 
 """, version = scriptID)
@@ -115,7 +115,7 @@ parser.add_option('-l',
                   help = 'type of lattice structure [%default] {}'.format(latticeChoices))
 parser.add_option('--covera',
                   dest = 'CoverA', type = 'float', metavar = 'float',
-                  help = 'C over A ratio for hexagonal systems')
+                  help = 'C over A ratio for hexagonal systems [%default]')
 parser.add_option('-f',
                   '--force',
                   dest = 'force',

processing/post/addSpectralDecomposition.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing eigenvalues and eigenvectors of requested symmetric tensor column(s).
 
 """, version = scriptID)

processing/post/addStrainTensors.py

@@ -25,7 +25,7 @@ def operator(stretch,strain,eigenvalues):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Add column(s) containing given strains based on given stretches of requested deformation gradient column(s).
 
 """, version = scriptID)
@@ -56,16 +56,15 @@ parser.add_option('-f','--defgrad',
                   metavar = '<string LIST>',
                   help = 'heading(s) of columns containing deformation tensor values [%default]')
 
-parser.set_defaults(right       = False,
-                    left        = False,
-                    logarithmic = False,
-                    biot        = False,
-                    green       = False,
+parser.set_defaults(
                     defgrad     = ['f'],
                    )
 
 (options,filenames) = parser.parse_args()
 
+if len(options.defgrad) > 1:
+  options.defgrad = options.defgrad[1:]
+
 stretches = []
 strains = []
 

processing/post/addTable.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -12,7 +12,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Append data of ASCIItable(s).
 
 """, version = scriptID)
@@ -24,6 +24,10 @@ parser.add_option('-a', '--add','--table',
 
 (options,filenames) = parser.parse_args()
 
+if options.table is None:
+  parser.error('no table specified.')
+
+
 # --- loop over input files -------------------------------------------------------------------------
 
 if filenames == []: filenames = [None]

processing/post/averageDown.py

@@ -14,7 +14,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Average each data block of size 'packing' into single values thus reducing the former grid to grid/packing.
 
 """, version = scriptID)
@@ -34,16 +34,14 @@ parser.add_option('--shift',
 parser.add_option('-g', '--grid',
                   dest = 'grid',
                   type = 'int', nargs = 3, metavar = 'int int int',
-                  help = 'grid in x,y,z [autodetect]')
+                  help = 'grid in x,y,z (optional)')
 parser.add_option('-s', '--size',
                   dest = 'size',
                   type = 'float', nargs = 3, metavar = 'float float float',
-                  help = 'size in x,y,z [autodetect]')
+                  help = 'size in x,y,z (optional)')
 parser.set_defaults(pos     = 'pos',
                     packing = (2,2,2),
                     shift   = (0,0,0),
-                    grid    = (0,0,0),
-                    size    = (0.0,0.0,0.0),
                    )
 
 (options,filenames) = parser.parse_args()
@@ -92,7 +90,7 @@ for name in filenames:
 
   table.data_readArray()
 
-  if (any(options.grid) == 0 or any(options.size) == 0.0):
+  if (options.grid is None or options.size is None):
     grid,size = damask.util.coordGridAndSize(table.data[:,table.label_indexrange(options.pos)])
   else:
     grid   = np.array(options.grid,'i')

processing/post/binXY.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Produces a binned grid of two columns from an ASCIItable, i.e. a two-dimensional probability density map.
 
 """, version = scriptID)
@@ -37,15 +37,15 @@ parser.add_option('-t','--type',
 parser.add_option('-x','--xrange',
                   dest = 'xrange',
                   type = 'float', nargs = 2, metavar = 'float float',
-                  help = 'min max value in x direction [autodetect]')
+                  help = 'min max limits in x direction (optional)')
 parser.add_option('-y','--yrange',
                   dest = 'yrange',
                   type = 'float', nargs = 2, metavar = 'float float',
-                  help = 'min max value in y direction [autodetect]')
+                  help = 'min max limits in y direction (optional)')
 parser.add_option('-z','--zrange',
                   dest = 'zrange',
                   type = 'float', nargs = 2, metavar = 'float float',
-                  help = 'min max value in z direction [autodetect]')
+                  help = 'min max limits in z direction (optional)')
 parser.add_option('-i','--invert',
                   dest = 'invert',
                   action = 'store_true',
@@ -64,9 +64,6 @@ parser.set_defaults(bins = (10,10),
                     xrange = (0.0,0.0),
                     yrange = (0.0,0.0),
                     zrange = (0.0,0.0),
-                    invert = False,
-                    normRow = False,
-                    normCol = False,
                    )
 
 (options,filenames) = parser.parse_args()

processing/post/blowUp.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Blows up each value to a surrounding data block of size 'packing' thus increasing the former resolution
 to resolution*packing.
 
@@ -27,10 +27,10 @@ parser.add_option('-p','--packing',
                   help = 'dimension of packed group [%default]')
 parser.add_option('-g','--grid',
                   dest = 'resolution', type = 'int', nargs = 3, metavar = 'int int int',
-                  help = 'resolution in x,y,z [autodetect]')
+                  help = 'grid in x,y,z (optional)')
 parser.add_option('-s','--size',
                   dest = 'dimension', type = 'float', nargs = 3, metavar = 'int int int',
-                  help = 'dimension in x,y,z [autodetect]')
+                  help = 'size in x,y,z (optional)')
 parser.set_defaults(pos  = 'pos',
                     packing = (2,2,2),
                     grid    = (0,0,0),

processing/post/filterTable.py

@@ -30,7 +30,7 @@ def sortingList(labels,whitelistitems):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Filter rows according to condition and columns by either white or black listing.
 
 Examples:

processing/post/groupTable.py

@@ -20,7 +20,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Apply a user-specified function to condense into a single row all those rows for which columns 'label' have identical values.
 Output table will contain as many rows as there are different (unique) values in the grouping column(s).
 Periodic domain averaging of coordinate values is supported.

processing/post/permuteData.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Permute all values in given column(s).
 
 """, version = scriptID)

processing/post/reLabel.py

@@ -12,7 +12,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog [options] dfile[s]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Rename scalar, vectorial, and/or tensorial data header labels.
 
 """, version = scriptID)

processing/post/rotateData.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Rotate vector and/or tensor column data by given angle around given axis.
 
 """, version = scriptID)
@@ -29,7 +29,7 @@ parser.add_option('-r', '--rotation',
 parser.add_option('--degrees',
                   dest = 'degrees',
                   action = 'store_true',
-                  help = 'angle is given in degrees [%default]')
+                  help = 'angles are given in degrees')
 
 parser.set_defaults(rotation = (0.,1.,0.,0.),                                                       # no rotation about 1,0,0
                     degrees = False,

processing/post/scaleData.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Uniformly scale column values by given factor.
 
 """, version = scriptID)

processing/post/shiftData.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Uniformly shift column values by given offset.
 
 """, version = scriptID)

processing/post/sortTable.py

@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Sort rows by given (or all) column label(s).
 
 Examples:

processing/post/viewTable.py

@@ -12,7 +12,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(usage='%prog [options] [file[s]]', description = """
+parser = OptionParser(usage='%prog options [ASCIItable(s)]', description = """
 Show components of given ASCIItable(s).
 
 """, version = scriptID)

processing/post/vtk_addGridData.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,vtk
@@ -17,7 +17,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 msg = "Add scalars, vectors, and/or an RGB tuple from"
 msg += "an ASCIItable to existing VTK grid (.vtr/.vtk/.vtu)."
 parser = OptionParser(option_class=damask.extendableOption,
-                      usage='%prog options [file[s]]',
+                      usage='%prog options [ASCIItable(s)]',
                       description = msg,
                       version = scriptID)
 
@@ -25,10 +25,6 @@ parser.add_option(      '--vtk',
                   dest = 'vtk',
                   type = 'string', metavar = 'string',
                   help = 'VTK file name')
-parser.add_option(      '--inplace',
-                  dest = 'inplace',
-                  action = 'store_true',
-                  help = 'modify VTK file in-place')
 parser.add_option('-r', '--render',
                   dest = 'render',
                   action = 'store_true',
@@ -49,7 +45,6 @@ parser.add_option('-c', '--color',
 parser.set_defaults(data = [],
                     tensor = [],
                     color = [],
-                    inplace = False,
                     render = False,
 )
 
@@ -64,24 +59,23 @@ if os.path.splitext(options.vtk)[1] == '.vtr':
   reader.Update()
   rGrid = reader.GetOutput()
   writer = vtk.vtkXMLRectilinearGridWriter()
-  writer.SetFileName(os.path.splitext(options.vtk)[0]+('.vtr' if options.inplace else '_added.vtr'))
 elif os.path.splitext(options.vtk)[1] == '.vtk':
   reader = vtk.vtkGenericDataObjectReader()
   reader.SetFileName(options.vtk)
   reader.Update()
   rGrid = reader.GetRectilinearGridOutput()
   writer = vtk.vtkXMLRectilinearGridWriter()
-  writer.SetFileName(os.path.splitext(options.vtk)[0]+('.vtr' if options.inplace else '_added.vtr'))
 elif os.path.splitext(options.vtk)[1] == '.vtu':
   reader = vtk.vtkXMLUnstructuredGridReader()
   reader.SetFileName(options.vtk)
   reader.Update()
   rGrid = reader.GetOutput()
   writer = vtk.vtkXMLUnstructuredGridWriter()
-  writer.SetFileName(os.path.splitext(options.vtk)[0]+('.vtu' if options.inplace else '_added.vtu'))
 else:
   parser.error('Unsupported VTK file type extension.')
 
+writer.SetFileName(options.vtk)
+
 Npoints = rGrid.GetNumberOfPoints()
 Ncells  = rGrid.GetNumberOfCells()
 
@@ -172,8 +166,7 @@ for name in filenames:
 
   writer.SetDataModeToBinary()
   writer.SetCompressorTypeToZLib()
-  if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid)
-  else:                          writer.SetInputData(rGrid)
+  writer.SetInputData(rGrid)
   writer.Write()
 
 # ------------------------------------------ render result ---------------------------------------

processing/post/vtk_addPointCloudData.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,vtk
@@ -15,7 +15,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 # --------------------------------------------------------------------
 
 parser = OptionParser(option_class=damask.extendableOption,
-                      usage='%prog options [file[s]]',
+                      usage='%prog options [ASCIItable(s)]',
                       description = """Add scalar and RGB tuples from ASCIItable to existing VTK point cloud (.vtp).""",
                       version = scriptID)
 
@@ -23,10 +23,6 @@ parser.add_option(      '--vtk',
                   dest = 'vtk',
                   type = 'string', metavar = 'string',
                   help = 'VTK file name')
-parser.add_option(      '--inplace',
-                  dest = 'inplace',
-                  action = 'store_true',
-                  help = 'modify VTK file in-place')
 parser.add_option('-r', '--render',
                   dest = 'render',
                   action = 'store_true',
@@ -46,8 +42,6 @@ parser.add_option('-c', '--color',   dest='color', action='extend',
 parser.set_defaults(data = [],
                     tensor = [],
                     color = [],
-                    inplace = False,
-                    render = False,
 )
 
 (options, filenames) = parser.parse_args()
@@ -151,14 +145,12 @@ for name in filenames:
 # ------------------------------------------ output result ---------------------------------------
 
   Polydata.Modified()
-  if vtk.VTK_MAJOR_VERSION <= 5: Polydata.Update()
 
   writer = vtk.vtkXMLPolyDataWriter()
   writer.SetDataModeToBinary()
   writer.SetCompressorTypeToZLib()
-  writer.SetFileName(os.path.splitext(options.vtk)[0]+('.vtp' if options.inplace else '_added.vtp'))
-  if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(Polydata)
-  else:                          writer.SetInputData(Polydata)
+  writer.SetFileName(options.vtk)
+  writer.SetInputData(Polydata)
   writer.Write()
 
 # ------------------------------------------ render result ---------------------------------------

processing/post/vtk_addRectilinearGridData.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,vtk
@@ -25,10 +25,6 @@ parser.add_option(      '--vtk',
                   dest = 'vtk',
                   type = 'string', metavar = 'string',
                   help = 'VTK file name')
-parser.add_option(      '--inplace',
-                  dest = 'inplace',
-                  action = 'store_true',
-                  help = 'modify VTK file in-place')
 parser.add_option('-r', '--render',
                   dest = 'render',
                   action = 'store_true',
@@ -49,7 +45,6 @@ parser.add_option('-c', '--color',
 parser.set_defaults(data = [],
                     tensor = [],
                     color = [],
-                    inplace = False,
                     render = False,
 )
 
@@ -158,16 +153,14 @@ for name in filenames:
       elif mode == 'point': rGrid.GetPointData().AddArray(VTKarray[me])
 
   rGrid.Modified()
-  if vtk.VTK_MAJOR_VERSION <= 5: rGrid.Update()
 
 # ------------------------------------------ output result ---------------------------------------
 
   writer = vtk.vtkXMLRectilinearGridWriter()
   writer.SetDataModeToBinary()
   writer.SetCompressorTypeToZLib()
-  writer.SetFileName(os.path.splitext(options.vtk)[0]+('.vtr' if options.inplace else '_added.vtr'))
-  if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid)
-  else:                          writer.SetInputData(rGrid)
+  writer.SetFileName(options.vtk)
+  writer.SetInputData(rGrid)
   writer.Write()
 
 # ------------------------------------------ render result ---------------------------------------

processing/post/vtk_pointCloud.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys,vtk
@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Produce a VTK point cloud dataset based on coordinates given in an ASCIItable.
 
 """, version = scriptID)
@@ -78,7 +78,6 @@ for name in filenames:
   Polydata.SetPoints(Points)
   Polydata.SetVerts(Vertices)
   Polydata.Modified()
-  if vtk.VTK_MAJOR_VERSION <= 5: Polydata.Update()
  
 # ------------------------------------------ output result ---------------------------------------  
 
@@ -94,8 +93,8 @@ for name in filenames:
     writer.SetHeader('# powered by '+scriptID)
     writer.WriteToOutputStringOn()
   
-  if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(Polydata)
-  else:                          writer.SetInputData(Polydata)
+  
+  writer.SetInputData(Polydata)
 
   writer.Write()
 

processing/post/vtk_rectilinearGrid.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys,vtk
@@ -13,7 +13,7 @@ scriptID   = ' '.join([scriptName,damask.version])
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
 Create regular voxel grid from points in an ASCIItable.
 
 """, version = scriptID)
@@ -125,8 +125,7 @@ for name in filenames:
     writer.SetHeader('# powered by '+scriptID)
     writer.WriteToOutputStringOn()
   
-  if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(rGrid)
-  else:                          writer.SetInputData(rGrid)
+  writer.SetInputData(rGrid)
 
   writer.Write()
 

processing/pre/geom_addPrimitive.py

@@ -25,7 +25,7 @@ mappings = {
         'microstructures': lambda x: int(x),
           }
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog option(s) [geomfile(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog option [geomfile(s)]', description = """
 Positions a geometric object within the (three-dimensional) canvas of a spectral geometry description.
 Depending on the sign of the dimension parameters, these objects can be boxes, cylinders, or ellipsoids.
 

processing/pre/geom_clean.py

@@ -18,7 +18,7 @@ def mostFrequent(arr):
 #                                MAIN
 #--------------------------------------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog option(s) [geomfile(s)]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [geomfile(s)]', description = """
 Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
 
 """, version=scriptID)

processing/pre/geom_grainGrowth.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys,math
@@ -49,7 +49,7 @@ parser.set_defaults(d = 1,
 
 (options, filenames) = parser.parse_args()
 
-options.immutable = map(int,options.immutable)
+options.immutable = list(map(int,options.immutable))
 
 getInterfaceEnergy = lambda A,B: np.float32((A*B != 0)*(A != B)*1.0)                               # 1.0 if A & B are distinct & nonzero, 0.0 otherwise
 struc = ndimage.generate_binary_structure(3,1)                                                     # 3D von Neumann neighborhood
@@ -70,9 +70,9 @@ for name in filenames:
   table.head_read()
   info,extra_header = table.head_getGeom()
   
-  damask.util.croak(['grid     a b c:  {}'.format(' x '.join(map(str,info['grid']))),
-                     'size     x y z:  {}'.format(' x '.join(map(str,info['size']))),
-                     'origin   x y z:  {}'.format(' : '.join(map(str,info['origin']))),
+  damask.util.croak(['grid     a b c:  {}'.format(' x '.join(list(map(str,info['grid'])))),
+                     'size     x y z:  {}'.format(' x '.join(list(map(str,info['size'])))),
+                     'origin   x y z:  {}'.format(' : '.join(list(map(str,info['origin'])))),
                      'homogenization:  {}'.format(info['homogenization']),
                      'microstructures: {}'.format(info['microstructures']),
                     ])
@@ -102,9 +102,9 @@ for name in filenames:
     gauss = np.exp(-(X*X + Y*Y + Z*Z)/(2.0*options.d*options.d),dtype=np.float32) \
             /np.power(2.0*np.pi*options.d*options.d,(3.0 - np.count_nonzero(info['grid'] == 1))/2.,dtype=np.float32)
           
-    gauss[:,:,:grid[2]/2:-1] = gauss[:,:,1:(grid[2]+1)/2]     # trying to cope with uneven (odd) grid size
-    gauss[:,:grid[1]/2:-1,:] = gauss[:,1:(grid[1]+1)/2,:]
-    gauss[:grid[0]/2:-1,:,:] = gauss[1:(grid[0]+1)/2,:,:]
+    gauss[:,:,:grid[2]//2:-1] = gauss[:,:,1:(grid[2]+1)//2]     # trying to cope with uneven (odd) grid size
+    gauss[:,:grid[1]//2:-1,:] = gauss[:,1:(grid[1]+1)//2,:]
+    gauss[:grid[0]//2:-1,:,:] = gauss[1:(grid[0]+1)//2,:,:]
     gauss = np.fft.rfftn(gauss).astype(np.complex64)
 
   for smoothIter in range(options.N):
@@ -119,9 +119,9 @@ for name in filenames:
                                                           microstructure,i,axis=0), j,axis=1), k,axis=2)))
 
     # periodically extend interfacial energy array by half a grid size in positive and negative directions
-    periodic_interfaceEnergy = np.tile(interfaceEnergy,(3,3,3))[grid[0]/2:-grid[0]/2,
-                                                                grid[1]/2:-grid[1]/2,
-                                                                grid[2]/2:-grid[2]/2]
+    periodic_interfaceEnergy = np.tile(interfaceEnergy,(3,3,3))[grid[0]//2:-grid[0]//2,
+                                                                grid[1]//2:-grid[1]//2,
+                                                                grid[2]//2:-grid[2]//2]
 
     # transform bulk volume (i.e. where interfacial energy remained zero), store index of closest boundary voxel
     index = ndimage.morphology.distance_transform_edt(periodic_interfaceEnergy == 0.,                                            
@@ -148,15 +148,15 @@ for name in filenames:
                          ndimage.morphology.binary_dilation(interfaceEnergy > 0.,
                                                             structure = struc,
                                                             iterations = int(round(options.d*2.))-1),# fat boundary
-                         periodic_bulkEnergy[grid[0]/2:-grid[0]/2,                                 # retain filled energy on fat boundary...
-                                             grid[1]/2:-grid[1]/2,
-                                             grid[2]/2:-grid[2]/2],                                # ...and zero everywhere else
+                         periodic_bulkEnergy[grid[0]//2:-grid[0]//2,                                 # retain filled energy on fat boundary...
+                                             grid[1]//2:-grid[1]//2,
+                                             grid[2]//2:-grid[2]//2],                                # ...and zero everywhere else
                          0.)).astype(np.complex64) *
                          gauss).astype(np.float32)
 
-      periodic_diffusedEnergy = np.tile(diffusedEnergy,(3,3,3))[grid[0]/2:-grid[0]/2,
-                                                                grid[1]/2:-grid[1]/2,
-                                                                grid[2]/2:-grid[2]/2]              # periodically extend the smoothed bulk energy
+      periodic_diffusedEnergy = np.tile(diffusedEnergy,(3,3,3))[grid[0]//2:-grid[0]//2,
+                                                                grid[1]//2:-grid[1]//2,
+                                                                grid[2]//2:-grid[2]//2]              # periodically extend the smoothed bulk energy
 
 
     # transform voxels close to interface region
@@ -164,15 +164,15 @@ for name in filenames:
                                                       return_distances = False,
                                                       return_indices = True)                       # want index of closest bulk grain
 
-    periodic_microstructure = np.tile(microstructure,(3,3,3))[grid[0]/2:-grid[0]/2,
-                                                              grid[1]/2:-grid[1]/2,
-                                                              grid[2]/2:-grid[2]/2]                # periodically extend the microstructure
+    periodic_microstructure = np.tile(microstructure,(3,3,3))[grid[0]//2:-grid[0]//2,
+                                                              grid[1]//2:-grid[1]//2,
+                                                              grid[2]//2:-grid[2]//2]                # periodically extend the microstructure
 
     microstructure = periodic_microstructure[index[0],
                                              index[1],
-                                             index[2]].reshape(2*grid)[grid[0]/2:-grid[0]/2,
-                                                                       grid[1]/2:-grid[1]/2,
-                                                                       grid[2]/2:-grid[2]/2]       # extent grains into interface region
+                                             index[2]].reshape(2*grid)[grid[0]//2:-grid[0]//2,
+                                                                       grid[1]//2:-grid[1]//2,
+                                                                       grid[2]//2:-grid[2]//2]       # extent grains into interface region
 
     # replace immutable microstructures with closest mutable ones
     index = ndimage.morphology.distance_transform_edt(np.in1d(microstructure,options.immutable).reshape(grid),
@@ -236,3 +236,4 @@ for name in filenames:
 # --- output finalization --------------------------------------------------------------------------
 
   table.close()     
+  

processing/pre/geom_toTable.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import os,sys
@@ -48,11 +48,11 @@ for name in filenames:
   table.head_read()
   info,extra_header = table.head_getGeom()
   
-  damask.util.croak(['grid     a b c:  %s'%(' x '.join(map(str,info['grid']))),
-                     'size     x y z:  %s'%(' x '.join(map(str,info['size']))),
-                     'origin   x y z:  %s'%(' : '.join(map(str,info['origin']))),
-                     'homogenization:  %i'%info['homogenization'],
-                     'microstructures: %i'%info['microstructures'],
+  damask.util.croak(['grid     a b c:  {}'.format(' x '.join(list(map(str,info['grid'])))),
+                     'size     x y z:  {}'.format(' x '.join(list(map(str,info['size'])))),
+                     'origin   x y z:  {}'.format(' : '.join(list(map(str,info['origin'])))),
+                     'homogenization:  {}'.format(info['homogenization']),
+                     'microstructures: {}'.format(info['microstructures']),
                     ])
 
   errors = []
@@ -86,7 +86,7 @@ for name in filenames:
   yy = np.tile(np.repeat(y,info['grid'][0]                ),info['grid'][2])
   zz =         np.repeat(z,info['grid'][0]*info['grid'][1])
 
-  table.data = np.squeeze(np.dstack((xx,yy,zz,microstructure)))
+  table.data = np.squeeze(np.dstack((xx,yy,zz,microstructure)),axis=0)
   table.data_writeArray()
 
 # ------------------------------------------ finalize output ---------------------------------------

processing/pre/seeds_check.sh

@@ -2,9 +2,9 @@
 
 for seeds in "$@"
 do
-  vtk_pointcloud $seeds
+  vtk_pointCloud $seeds
 
-  vtk_addPointcloudData $seeds \
+  vtk_addPointCloudData $seeds \
     --data microstructure,weight \
     --inplace \
     --vtk ${seeds%.*}.vtp \

processing/pre/seeds_fromDistribution.py

@@ -1,10 +1,11 @@
-#!/usr/bin/env python2.7
+#!/usr/bin/env python3
 # -*- coding: UTF-8 no BOM -*-
 
 import threading,time,os,sys,random
 import numpy as np
 from optparse import OptionParser
-from cStringIO import StringIO
+from io import StringIO
+import binascii
 import damask
 
 scriptName = os.path.splitext(os.path.basename(__file__))[0]
@@ -96,7 +97,7 @@ class myThread (threading.Thread):
       perturbedGeomVFile = StringIO()
       perturbedSeedsVFile.reset()
       perturbedGeomVFile.write(damask.util.execute('geom_fromVoronoiTessellation '+
-                     ' -g '+' '.join(map(str, options.grid)),streamIn=perturbedSeedsVFile)[0])
+                     ' -g '+' '.join(list(map(str, options.grid))),streamIn=perturbedSeedsVFile)[0])
       perturbedGeomVFile.reset()
 
 #--- evaluate current seeds file ----------------------------------------------------------------------
@@ -214,7 +215,7 @@ options = parser.parse_args()[0]
 damask.util.report(scriptName,options.seedFile)
 
 if options.randomSeed is None:
-  options.randomSeed = int(os.urandom(4).encode('hex'), 16)
+  options.randomSeed = int(binascii.hexlify(os.urandom(4)),16)
 damask.util.croak(options.randomSeed)
 delta = (options.scale/options.grid[0],options.scale/options.grid[1],options.scale/options.grid[2])
 baseFile=os.path.splitext(os.path.basename(options.seedFile))[0]
@@ -240,17 +241,17 @@ if os.path.isfile(os.path.splitext(options.seedFile)[0]+'.seeds'):
     for line in initialSeedFile: bestSeedsVFile.write(line)
 else:
   bestSeedsVFile.write(damask.util.execute('seeds_fromRandom'+\
-                                ' -g '+' '.join(map(str, options.grid))+\
+                                ' -g '+' '.join(list(map(str, options.grid)))+\
                                 ' -r {:d}'.format(options.randomSeed)+\
                                 ' -N '+str(nMicrostructures))[0])
 bestSeedsUpdate = time.time()
 
 # ----------- tessellate initial seed file to get and evaluate geom file
-bestSeedsVFile.reset()
+bestSeedsVFile.seek(0)
 initialGeomVFile = StringIO()
 initialGeomVFile.write(damask.util.execute('geom_fromVoronoiTessellation '+
-                               ' -g '+' '.join(map(str, options.grid)),bestSeedsVFile)[0])
-initialGeomVFile.reset()
+                               ' -g '+' '.join(list(map(str, options.grid))),bestSeedsVFile)[0])
+initialGeomVFile.seek(0)
 initialGeomTable = damask.ASCIItable(initialGeomVFile,None,labeled=False,readonly=True)
 initialGeomTable.head_read()
 info,devNull =  initialGeomTable.head_getGeom()

processing/pre/seeds_fromRandom.py

@@ -28,7 +28,7 @@ def kdtree_search(cloud, queryPoints):
 #                                MAIN
 # --------------------------------------------------------------------
 
-parser = OptionParser(option_class=damask.extendableOption, usage='%prog [options]', description = """
+parser = OptionParser(option_class=damask.extendableOption, usage='%prog options', description = """
 Distribute given number of points randomly within (a fraction of) the three-dimensional cube [0.0,0.0,0.0]--[1.0,1.0,1.0].
 Reports positions with random crystal orientations in seeds file format to STDOUT.
 

python/damask/solver/abaqus.py

@@ -2,7 +2,7 @@
 
 from .solver import Solver
 import damask
-import subprocess,re
+import subprocess
 
 class Abaqus(Solver):
 
@@ -15,14 +15,13 @@ class Abaqus(Solver):
 
   def return_run_command(self,model):
     env=damask.Environment()
-    shortVersion = re.sub('[\.,-]', '',self.version)
     try:
-      cmd='abq'+shortVersion
-      subprocess.check_output(['abq'+shortVersion,'information=release'])
+      cmd='abq'+self.version
+      subprocess.check_output([cmd,'information=release'])
     except OSError:                                                                                 # link to abqXXX not existing
       cmd='abaqus'
       process = subprocess.Popen(['abaqus','information=release'],stdout = subprocess.PIPE,stderr = subprocess.PIPE)
-      detectedVersion = process.stdout.readlines()[1].split()[1]
+      detectedVersion = process.stdout.readlines()[1].split()[1].decode('utf-8')
       if self.version != detectedVersion:
-        raise Exception('found Abaqus version %s, but requested %s'%(detectedVersion,self.version))
-    return '%s -job %s -user %s/src/DAMASK_abaqus interactive'%(cmd,model,env.rootDir())
+        raise Exception('found Abaqus version {}, but requested {}'.format(detectedVersion,self.version))
+    return '{} -job {} -user {}/src/DAMASK_abaqus interactive'.format(cmd,model,env.rootDir())

src/CMakeLists.txt

@@ -7,6 +7,7 @@ endif()
 
 # The dependency detection in CMake is not functioning for Fortran,
 # hence we declare the dependencies from top to bottom in the following
+
 add_library(C_ROUTINES OBJECT "C_routines.c")
 set(OBJECTFILES $<TARGET_OBJECTS:C_ROUTINES>)
 
@@ -17,6 +18,10 @@ list(APPEND OBJECTFILES $<TARGET_OBJECTS:SYSTEM_ROUTINES>)
 add_library(PREC OBJECT "prec.f90")
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:PREC>)
 
+add_library(ELEMENT OBJECT "element.f90")
+add_dependencies(ELEMENT PREC)
+list(APPEND OBJECTFILES $<TARGET_OBJECTS:ELEMENT>)
+
 add_library(QUIT OBJECT "quit.f90")
 add_dependencies(QUIT PREC)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:QUIT>)
@@ -34,7 +39,7 @@ add_dependencies(NUMERICS IO)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:NUMERICS>)
 
 add_library(DEBUG OBJECT "debug.f90")
-add_dependencies(DEBUG NUMERICS)
+add_dependencies(DEBUG IO)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:DEBUG>)
 
 add_library(DAMASK_CONFIG OBJECT "config.f90")
@@ -42,7 +47,7 @@ add_dependencies(DAMASK_CONFIG DEBUG)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:DAMASK_CONFIG>)
 
 add_library(HDF5_UTILITIES OBJECT "HDF5_utilities.f90")
-add_dependencies(HDF5_UTILITIES DAMASK_CONFIG)
+add_dependencies(HDF5_UTILITIES DAMASK_CONFIG NUMERICS)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:HDF5_UTILITIES>)
 
 add_library(RESULTS OBJECT "results.f90")
@@ -50,7 +55,7 @@ add_dependencies(RESULTS HDF5_UTILITIES)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:RESULTS>)
 
 add_library(FEsolving OBJECT "FEsolving.f90")
-add_dependencies(FEsolving RESULTS)
+add_dependencies(FEsolving DEBUG)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:FEsolving>)
 
 add_library(MATH OBJECT "math.f90")
@@ -69,17 +74,21 @@ add_library(ROTATIONS OBJECT "rotations.f90")
 add_dependencies(ROTATIONS LAMBERT QUATERNIONS)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:ROTATIONS>)
 
+add_library(MESH_BASE OBJECT "mesh_base.f90")
+add_dependencies(MESH_BASE ELEMENT)
+list(APPEND OBJECTFILES $<TARGET_OBJECTS:MESH_BASE>)
+
 # SPECTRAL solver and FEM solver use different mesh files
 if (PROJECT_NAME STREQUAL "DAMASK_spectral")
-      add_library(MESH OBJECT "mesh.f90")
-      add_dependencies(MESH ROTATIONS FEsolving)
+      add_library(MESH OBJECT "mesh_grid.f90")
+      add_dependencies(MESH MESH_BASE MATH FEsolving)
       list(APPEND OBJECTFILES $<TARGET_OBJECTS:MESH>)
 elseif (PROJECT_NAME STREQUAL "DAMASK_FEM")
       add_library(FEZoo OBJECT "FEM_zoo.f90")
-      add_dependencies(FEZoo ROTATIONS FEsolving)
+      add_dependencies(FEZoo IO)
       list(APPEND OBJECTFILES $<TARGET_OBJECTS:FEZoo>)
-      add_library(MESH  OBJECT "meshFEM.f90")
-      add_dependencies(MESH FEZoo)
+      add_library(MESH OBJECT "mesh_FEM.f90")
+      add_dependencies(MESH FEZoo MESH_BASE MATH FEsolving)
       list(APPEND OBJECTFILES $<TARGET_OBJECTS:MESH>)
 endif()
 
@@ -87,9 +96,9 @@ add_library(MATERIAL OBJECT "material.f90")
 add_dependencies(MATERIAL MESH DAMASK_CONFIG)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:MATERIAL>)
 
-add_library(DAMASK_HELPERS OBJECT "lattice.f90")
-add_dependencies(DAMASK_HELPERS MATERIAL)
-list(APPEND OBJECTFILES $<TARGET_OBJECTS:DAMASK_HELPERS>)
+add_library(LATTICE OBJECT "lattice.f90")
+add_dependencies(LATTICE MATERIAL)
+list(APPEND OBJECTFILES $<TARGET_OBJECTS:LATTICE>)
 
 # For each modular section
 add_library (PLASTIC OBJECT
@@ -100,14 +109,14 @@ add_library (PLASTIC OBJECT
   "plastic_kinematichardening.f90"
   "plastic_nonlocal.f90"
   "plastic_none.f90")
-add_dependencies(PLASTIC DAMASK_HELPERS)
+add_dependencies(PLASTIC LATTICE RESULTS)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:PLASTIC>)
 
 add_library (KINEMATICS OBJECT
   "kinematics_cleavage_opening.f90"
   "kinematics_slipplane_opening.f90"
   "kinematics_thermal_expansion.f90")
-add_dependencies(KINEMATICS DAMASK_HELPERS)
+add_dependencies(KINEMATICS LATTICE RESULTS)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:KINEMATICS>)
 
 add_library (SOURCE OBJECT
@@ -117,7 +126,7 @@ add_library (SOURCE OBJECT
   "source_damage_isoDuctile.f90"
   "source_damage_anisoBrittle.f90"
   "source_damage_anisoDuctile.f90")
-add_dependencies(SOURCE DAMASK_HELPERS)
+add_dependencies(SOURCE LATTICE RESULTS)
 list(APPEND OBJECTFILES $<TARGET_OBJECTS:SOURCE>)
 
 add_library(CONSTITUTIVE OBJECT "constitutive.f90")

src/CPFEM.f90

@@ -140,8 +140,7 @@ subroutine CPFEM_init
    restartRead, &
    modelName
  use mesh, only: &
-   mesh_NcpElems, &
-   mesh_maxNips
+   theMesh
  use material, only: &
    material_phase, &
    homogState, &
@@ -168,10 +167,9 @@ subroutine CPFEM_init
    flush(6)
  endif mainProcess
 
- ! initialize stress and jacobian to zero
- allocate(CPFEM_cs(6,mesh_maxNips,mesh_NcpElems)) ;                CPFEM_cs              = 0.0_pReal
- allocate(CPFEM_dcsdE(6,6,mesh_maxNips,mesh_NcpElems)) ;           CPFEM_dcsdE           = 0.0_pReal
- allocate(CPFEM_dcsdE_knownGood(6,6,mesh_maxNips,mesh_NcpElems)) ; CPFEM_dcsdE_knownGood = 0.0_pReal
+ allocate(CPFEM_cs(               6,theMesh%elem%nIPs,theMesh%Nelems), source= 0.0_pReal)
+ allocate(CPFEM_dcsdE(          6,6,theMesh%elem%nIPs,theMesh%Nelems), source= 0.0_pReal)
+ allocate(CPFEM_dcsdE_knownGood(6,6,theMesh%elem%nIPs,theMesh%Nelems), source= 0.0_pReal)
 
  ! *** restore the last converged values of each essential variable from the binary file
  if (restartRead) then
@@ -289,8 +287,7 @@ subroutine CPFEM_general(mode, parallelExecution, ffn, ffn1, temperature_inp, dt
    math_6toSym33
  use mesh, only: &
    mesh_FEasCP, &
-   mesh_NcpElems, &
-   mesh_maxNips, &
+   theMesh, &
    mesh_element
  use material, only: &
    microstructure_elemhomo, &
@@ -401,7 +398,7 @@ subroutine CPFEM_general(mode, parallelExecution, ffn, ffn1, temperature_inp, dt
    enddo; enddo
    if (iand(debug_level(debug_CPFEM), debug_levelBasic) /= 0_pInt) then
      write(6,'(a)') '<< CPFEM >> aging states'
-     if (debug_e <= mesh_NcpElems .and. debug_i <= mesh_maxNips) then
+     if (debug_e <= theMesh%Nelems .and. debug_i <= theMesh%elem%nIPs) then
        write(6,'(a,1x,i8,1x,i2,1x,i4,/,(12x,6(e20.8,1x)),/)') &
              '<< CPFEM >> aged state of elFE ip grain',debug_e, debug_i, 1, &
               plasticState(phaseAt(1,debug_i,debug_e))%state(:,phasememberAt(1,debug_i,debug_e))

src/CPFEM2.f90

@@ -95,8 +95,6 @@ subroutine CPFEM_init
  use prec, only: &
    pInt, pReal, pLongInt
  use IO, only: &
-   IO_read_realFile,&
-   IO_read_intFile, &
    IO_timeStamp, &
    IO_error
  use numerics, only: &

src/C_routines.c

@@ -6,9 +6,11 @@
 #include <sys/stat.h>
 #include <stdio.h>
 #include <string.h>
+#include <signal.h>
 
 /* http://stackoverflow.com/questions/30279228/is-there-an-alternative-to-getcwd-in-fortran-2003-2008 */
 
+
 int isdirectory_c(const char *dir){
   struct stat statbuf;
   if(stat(dir, &statbuf) != 0)                                                                      /* error */
@@ -44,3 +46,11 @@ void gethostname_c(char hostname[], int *stat){
 int chdir_c(const char *dir){
   return chdir(dir);
 }
+
+void signalusr1_c(void (*handler)(int)){
+  signal(SIGUSR1, handler);
+}
+
+void signalusr2_c(void (*handler)(int)){
+  signal(SIGUSR2, handler);
+}

src/DAMASK_abaqus.f

@@ -30,6 +30,11 @@ contains
 !> @brief reports and sets working directory
 !--------------------------------------------------------------------------------------------------
 subroutine DAMASK_interface_init
+#if __INTEL_COMPILER >= 1800
+ use, intrinsic :: iso_fortran_env, only: &
+   compiler_version, &
+   compiler_options
+#endif
  use ifport, only: &
    CHDIR
  
@@ -40,16 +45,25 @@ subroutine DAMASK_interface_init
  character(len=256) :: wd
 
  call date_and_time(values = dateAndTime)
- write(6,'(/,a)') ' <<<+-  DAMASK_abaqus_std  -+>>>'
- write(6,'(/,a)') ' Roters et al., Computational Materials Science, 2018'
- write(6,'(/,a)')              ' Version: '//DAMASKVERSION
- write(6,'(a,2(i2.2,a),i4.4)') ' Date:    ',dateAndTime(3),'/',&
-                                            dateAndTime(2),'/',&
-                                            dateAndTime(1) 
- write(6,'(a,2(i2.2,a),i2.2)') ' Time:    ',dateAndTime(5),':',&
-                                            dateAndTime(6),':',&
-                                            dateAndTime(7)  
- write(6,'(/,a)') ' <<<+-  DAMASK_interface init  -+>>>'
+ write(6,'(/,a)') ' <<<+-  DAMASK_abaqus  -+>>>'
+ write(6,'(/,a)') ' Roters et al., Computational Materials Science 158, 2018, 420-478'
+ write(6,'(a,/)') ' https://doi.org/10.1016/j.commatsci.2018.04.030'
+
+ write(6,'(a,/)')              ' Version: '//DAMASKVERSION
+
+! https://github.com/jeffhammond/HPCInfo/blob/master/docs/Preprocessor-Macros.md
+#if __INTEL_COMPILER >= 1800
+ write(6,*) 'Compiled with: ', compiler_version()
+ write(6,*) 'Compiler options: ', compiler_options()
+#else
+ write(6,'(a,i4.4,a,i8.8)') ' Compiled with Intel fortran version :', __INTEL_COMPILER,&
+                                                    ', build date :', __INTEL_COMPILER_BUILD_DATE
+#endif
+
+ write(6,*) 'Compiled on ', __DATE__,' at ',__TIME__
+
+ write(6,'(a,2(i2.2,a),i4.4)') ' Date: ',dateAndTime(3),'/',dateAndTime(2),'/', dateAndTime(1)
+ write(6,'(a,2(i2.2,a),i2.2)') ' Time: ',dateAndTime(5),':', dateAndTime(6),':', dateAndTime(7)
 
  call getoutdir(wd, lenOutDir)
  ierr = CHDIR(wd)

src/DAMASK_interface.f90

@@ -12,9 +12,9 @@
 module DAMASK_interface
  use prec, only: &
    pInt
-
  implicit none
  private
+ logical, public, protected :: SIGUSR1,SIGUSR2
  integer(pInt),       public, protected :: &
    interface_restartInc = 0_pInt                                                                    !< Increment at which calculation starts
  character(len=1024), public, protected :: &
@@ -42,6 +42,8 @@ contains
 subroutine DAMASK_interface_init()
  use, intrinsic :: &
    iso_fortran_env
+ use :: &
+   iso_c_binding
 #include <petsc/finclude/petscsys.h>
 #if defined(__GFORTRAN__) &&  __GNUC__ < 5
 ===================================================================================================
@@ -81,6 +83,8 @@ subroutine DAMASK_interface_init()
 
  use PETScSys
  use system_routines, only: &
+   signalusr1_C, &
+   signalusr2_C, &
    getHostName, &
    getCWD
 
@@ -139,16 +143,27 @@ subroutine DAMASK_interface_init()
 
  call date_and_time(values = dateAndTime)
  write(6,'(/,a)') ' <<<+-  DAMASK_interface init  -+>>>'
- write(6,'(a,/)') ' Roters et al., Computational Materials Science, 2018'
- write(6,'(/,a)')              ' Version: '//DAMASKVERSION
- write(6,'(a,2(i2.2,a),i4.4)') ' Date:    ',dateAndTime(3),'/',&
-                                            dateAndTime(2),'/',&
-                                            dateAndTime(1) 
- write(6,'(a,2(i2.2,a),i2.2)') ' Time:    ',dateAndTime(5),':',&
-                                            dateAndTime(6),':',&
-                                            dateAndTime(7)  
- write(6,'(/,a,i4.1)') ' MPI processes: ',worldsize
-#include "compilation_info.f90"
+ write(6,'(/,a)') ' Roters et al., Computational Materials Science 158, 2018, 420-478'
+ write(6,'(a,/)') ' https://doi.org/10.1016/j.commatsci.2018.04.030'
+
+ write(6,'(a,/)')              ' Version: '//DAMASKVERSION
+
+! https://github.com/jeffhammond/HPCInfo/blob/master/docs/Preprocessor-Macros.md
+#if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
+ write(6,*) 'Compiled with: ', compiler_version()
+ write(6,*) 'Compiler options: ', compiler_options()
+#elif defined(__INTEL_COMPILER)
+ write(6,'(a,i4.4,a,i8.8)') ' Compiled with Intel fortran version :', __INTEL_COMPILER,&
+                                                    ', build date :', __INTEL_COMPILER_BUILD_DATE
+#elif defined(__PGI)
+ write(6,'(a,i4.4,a,i8.8)') ' Compiled with PGI fortran version :', __PGIC__,&
+                                                               '.', __PGIC_MINOR__
+#endif
+
+ write(6,*) 'Compiled on ', __DATE__,' at ',__TIME__
+
+ write(6,'(a,2(i2.2,a),i4.4)') ' Date: ',dateAndTime(3),'/',dateAndTime(2),'/', dateAndTime(1)
+ write(6,'(a,2(i2.2,a),i2.2)') ' Time: ',dateAndTime(5),':', dateAndTime(6),':', dateAndTime(7)
  
  call get_command(commandLine)
  chunkPos = IIO_stringPos(commandLine)
@@ -215,9 +230,11 @@ subroutine DAMASK_interface_init()
 
  call get_environment_variable('USER',userName)
  ! ToDo: https://stackoverflow.com/questions/8953424/how-to-get-the-username-in-c-c-in-linux
+ write(6,'(/,a,i4.1)') ' MPI processes: ',worldsize
  write(6,'(a,a)')      ' Host name: ', trim(getHostName())
  write(6,'(a,a)')      ' User name: ', trim(userName)
- write(6,'(a,a)')      ' Command line call:      ', trim(commandLine)
+
+ write(6,'(/a,a)')     ' Command line call:      ', trim(commandLine)
  if (len(trim(workingDirArg)) > 0) &
    write(6,'(a,a)')    ' Working dir argument:   ', trim(workingDirArg)
  write(6,'(a,a)')      ' Geometry argument:      ', trim(geometryArg)
@@ -229,6 +246,12 @@ subroutine DAMASK_interface_init()
  if (interface_restartInc > 0_pInt) &
    write(6,'(a,i6.6)') ' Restart from increment: ', interface_restartInc
 
+ call signalusr1_c(c_funloc(setSIGUSR1))
+ call signalusr2_c(c_funloc(setSIGUSR2))
+ SIGUSR1 = .false.
+ SIGUSR2 = .false.
+
+
 end subroutine DAMASK_interface_init
 
 
@@ -412,6 +435,35 @@ character(len=1024) function makeRelativePath(a,b)
 
 end function makeRelativePath
 
+!--------------------------------------------------------------------------------------------------
+!> @brief sets global variable SIGUSR1 to .true. if program receives SIGUSR1
+!--------------------------------------------------------------------------------------------------
+subroutine setSIGUSR1(signal) bind(C)
+ use :: iso_c_binding
+   
+ implicit none
+ integer(C_INT), value :: signal
+ SIGUSR1 = .true.
+ 
+ write(6,*) 'received signal ',signal, 'set SIGUSR1'
+ 
+end subroutine setSIGUSR1
+ 
+ 
+!--------------------------------------------------------------------------------------------------
+!> @brief sets global variable SIGUSR2 to .true. if program receives SIGUSR2
+!--------------------------------------------------------------------------------------------------
+subroutine setSIGUSR2(signal) bind(C)
+ use :: iso_c_binding
+
+ implicit none
+ integer(C_INT), value :: signal
+ SIGUSR2 = .true.
+
+ write(6,*) 'received signal ',signal, 'set SIGUSR2'
+  
+end subroutine setSIGUSR2
+
 
 !--------------------------------------------------------------------------------------------------
 !> @brief taken from IO, check IO_stringValue for documentation 
@@ -469,7 +521,6 @@ pure function IIO_stringPos(string)
  do while (verify(string(right+1:),SEP)>0)
    left  = right + verify(string(right+1:),SEP)
    right = left + scan(string(left:),SEP) - 2
-   if ( string(left:left) == '#' ) exit
    IIO_stringPos = [IIO_stringPos,int(left, pInt), int(right, pInt)]
    IIO_stringPos(1) = IIO_stringPos(1)+1_pInt
  enddo

src/DAMASK_marc.f90

@@ -43,6 +43,11 @@ contains
 !> @brief reports and sets working directory
 !--------------------------------------------------------------------------------------------------
 subroutine DAMASK_interface_init
+#if __INTEL_COMPILER >= 1800
+ use, intrinsic :: iso_fortran_env, only: &
+   compiler_version, &
+   compiler_options
+#endif
  use ifport, only: &
    CHDIR
 
@@ -53,17 +58,26 @@ subroutine DAMASK_interface_init
  character(len=1024) :: wd
 
  call date_and_time(values = dateAndTime)
- write(6,'(/,a)') ' <<<+-  DAMASK_Marc  -+>>>'
- write(6,'(/,a)') ' Roters et al., Computational Materials Science, 2018'
- write(6,'(/,a)')              ' Version: '//DAMASKVERSION
- write(6,'(a,2(i2.2,a),i4.4)') ' Date:    ',dateAndTime(3),'/',&
-                                            dateAndTime(2),'/',&
-                                            dateAndTime(1)
- write(6,'(a,2(i2.2,a),i2.2)') ' Time:    ',dateAndTime(5),':',&
-                                            dateAndTime(6),':',&
-                                            dateAndTime(7)
- write(6,'(/,a)') ' <<<+-  DAMASK_interface init  -+>>>'
-#include "compilation_info.f90"
+ write(6,'(/,a)') ' <<<+-  DAMASK_abaqus  -+>>>'
+ write(6,'(/,a)') ' Roters et al., Computational Materials Science 158, 2018, 420-478'
+ write(6,'(a,/)') ' https://doi.org/10.1016/j.commatsci.2018.04.030'
+
+ write(6,'(a,/)')              ' Version: '//DAMASKVERSION
+
+! https://github.com/jeffhammond/HPCInfo/blob/master/docs/Preprocessor-Macros.md
+#if __INTEL_COMPILER >= 1800
+ write(6,*) 'Compiled with: ', compiler_version()
+ write(6,*) 'Compiler options: ', compiler_options()
+#else
+ write(6,'(a,i4.4,a,i8.8)') ' Compiled with Intel fortran version :', __INTEL_COMPILER,&
+                                                    ', build date :', __INTEL_COMPILER_BUILD_DATE
+#endif
+
+ write(6,*) 'Compiled on ', __DATE__,' at ',__TIME__
+
+ write(6,'(a,2(i2.2,a),i4.4)') ' Date: ',dateAndTime(3),'/',dateAndTime(2),'/', dateAndTime(1)
+ write(6,'(a,2(i2.2,a),i2.2)') ' Time: ',dateAndTime(5),':', dateAndTime(6),':', dateAndTime(7)
+
  inquire(5, name=wd)                                                                                ! determine inputputfile
  wd = wd(1:scan(wd,'/',back=.true.))
  ierr = CHDIR(wd)
@@ -134,6 +148,7 @@ subroutine hypela2(d,g,e,de,s,t,dt,ngens,m,nn,kcus,matus,ndi,nshear,disp, &
    debug_info, &
    debug_reset
  use mesh, only: &
+   theMesh, &
    mesh_FEasCP, &
    mesh_element, &
    mesh_node0, &
@@ -141,8 +156,7 @@ subroutine hypela2(d,g,e,de,s,t,dt,ngens,m,nn,kcus,matus,ndi,nshear,disp, &
    mesh_Ncellnodes, &
    mesh_cellnode, &
    mesh_build_cellnodes, &
-   mesh_build_ipCoordinates, &
-   FE_Nnodes
+   mesh_build_ipCoordinates
  use CPFEM, only: &
    CPFEM_general, &
    CPFEM_init_done, &
@@ -314,7 +328,7 @@ subroutine hypela2(d,g,e,de,s,t,dt,ngens,m,nn,kcus,matus,ndi,nshear,disp, &
          computationMode = ior(computationMode,CPFEM_BACKUPJACOBIAN)                                ! collect and backup Jacobian after convergence
          lastIncConverged = .false.                                                                 ! reset flag
        endif
-       do node = 1,FE_Nnodes(mesh_element(2,cp_en))
+       do node = 1,theMesh%elem%nNodes
          CPnodeID = mesh_element(4_pInt+node,cp_en)
          mesh_node(1:ndeg,CPnodeID) = mesh_node0(1:ndeg,CPnodeID) + numerics_unitlength * dispt(1:ndeg,node)
        enddo

src/FEM_utilities.f90

@@ -162,7 +162,6 @@ subroutine utilities_init()
 
  character(len=1024)                :: petsc_optionsPhysics
  integer(pInt)                      :: dimPlex
- integer(pInt)                      :: headerID = 205_pInt
  PetscInt,    allocatable           :: nEntities(:), nOutputCells(:), nOutputNodes(:)
  PetscInt                           :: dim
  PetscErrorCode                     :: ierr
@@ -213,13 +212,6 @@ subroutine utilities_init()
  nOutputCells(worldrank+1) = count(material_homog > 0_pInt)
  call MPI_Allreduce(MPI_IN_PLACE,nOutputNodes,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)
  call MPI_Allreduce(MPI_IN_PLACE,nOutputCells,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)
- if (worldrank == 0_pInt) then
-   open(unit=headerID, file=trim(getSolverJobName())//'.header', &
-        form='FORMATTED', status='REPLACE')
-   write(headerID, '(a,i0)') 'dimension : ',   dimPlex                                             
-   write(headerID, '(a,i0)') 'number of nodes : ', sum(nOutputNodes)
-   write(headerID, '(a,i0)') 'number of cells : ', sum(nOutputCells)
- endif 
 
 end subroutine utilities_init
 
@@ -503,7 +495,6 @@ subroutine utilities_indexActiveSet(field,section,x_local,f_local,localIS,global
    CHKERRQ(ierr)
    call ISDestroy(dummyIS,ierr); CHKERRQ(ierr)
  endif                      
- deallocate(localIndices)
  
 end subroutine utilities_indexActiveSet
 

src/FEM_zoo.f90

@@ -9,11 +9,11 @@ module FEM_Zoo
  private
  integer(pInt), parameter, public:: &
    maxOrder = 5                                                                            !< current max interpolation set at cubic (intended to be arbitrary)
- real(pReal),   dimension(2,3),       private, protected :: &
+ real(pReal),   dimension(2,3),       private, parameter :: &
    triangle    = reshape([-1.0_pReal, -1.0_pReal, &
                            1.0_pReal, -1.0_pReal, &
                           -1.0_pReal,  1.0_pReal], shape=[2,3])
- real(pReal),   dimension(3,4),       private, protected :: &
+ real(pReal),   dimension(3,4),       private, parameter :: &
    tetrahedron = reshape([-1.0_pReal, -1.0_pReal, -1.0_pReal, &
                            1.0_pReal, -1.0_pReal, -1.0_pReal, &
                           -1.0_pReal,  1.0_pReal, -1.0_pReal, &

src/commercialFEM_fileList.f90

@@ -15,7 +15,14 @@
 #include "Lambert.f90"
 #include "rotations.f90"
 #include "FEsolving.f90"
-#include "mesh.f90"
+#include "element.f90"
+#include "mesh_base.f90"
+#ifdef Abaqus
+#include "mesh_abaqus.f90"
+#endif
+#ifdef Marc4DAMASK
+#include "mesh_marc.f90"
+#endif
 #include "material.f90"
 #include "lattice.f90"
 #include "source_thermal_dissipation.f90"

src/compilation_info.f90

@@ -1,10 +0,0 @@
-#if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
-  write(6,*) 'Compiled with ', compiler_version()
-  write(6,*) 'With options  ', compiler_options()
-#else
-  write(6,'(a,i4.4,a,i8.8)') ' Compiled with Intel fortran version ', __INTEL_COMPILER,&
-                                                     ', build date ', __INTEL_COMPILER_BUILD_DATE
-#endif
-write(6,*) 'Compiled on ', __DATE__,' at ',__TIME__
-write(6,*)
-flush(6)

src/constitutive.f90

@@ -56,12 +56,9 @@ subroutine constitutive_init()
    IO_checkAndRewind, &
    IO_open_jobFile_stat, &
    IO_write_jobFile, &
-   IO_write_jobIntFile, &
    IO_timeStamp
  use config, only: &
    config_phase
- use mesh, only: &
-   FE_geomtype
  use config, only: &
    material_Nphase, &
    material_localFileExt, &
@@ -163,16 +160,16 @@ subroutine constitutive_init()
  call IO_checkAndRewind(FILEUNIT)
  if (any(phase_source == SOURCE_thermal_dissipation_ID))     call source_thermal_dissipation_init(FILEUNIT)
  if (any(phase_source == SOURCE_thermal_externalheat_ID))    call source_thermal_externalheat_init(FILEUNIT)
- if (any(phase_source == SOURCE_damage_isoBrittle_ID))       call source_damage_isoBrittle_init(FILEUNIT)
- if (any(phase_source == SOURCE_damage_isoDuctile_ID))       call source_damage_isoDuctile_init(FILEUNIT)
- if (any(phase_source == SOURCE_damage_anisoBrittle_ID))     call source_damage_anisoBrittle_init(FILEUNIT)
- if (any(phase_source == SOURCE_damage_anisoDuctile_ID))     call source_damage_anisoDuctile_init(FILEUNIT)
+ if (any(phase_source == SOURCE_damage_isoBrittle_ID))       call source_damage_isoBrittle_init
+ if (any(phase_source == SOURCE_damage_isoDuctile_ID))       call source_damage_isoDuctile_init
+ if (any(phase_source == SOURCE_damage_anisoBrittle_ID))     call source_damage_anisoBrittle_init
+ if (any(phase_source == SOURCE_damage_anisoDuctile_ID))     call source_damage_anisoDuctile_init
  
 !--------------------------------------------------------------------------------------------------
 ! parse kinematic mechanisms from config file
  call IO_checkAndRewind(FILEUNIT)
- if (any(phase_kinematics == KINEMATICS_cleavage_opening_ID))  call kinematics_cleavage_opening_init(FILEUNIT)
- if (any(phase_kinematics == KINEMATICS_slipplane_opening_ID)) call kinematics_slipplane_opening_init(FILEUNIT)
+ if (any(phase_kinematics == KINEMATICS_cleavage_opening_ID))  call kinematics_cleavage_opening_init
+ if (any(phase_kinematics == KINEMATICS_slipplane_opening_ID)) call kinematics_slipplane_opening_init
  if (any(phase_kinematics == KINEMATICS_thermal_expansion_ID)) call kinematics_thermal_expansion_init(FILEUNIT)
  close(FILEUNIT)
 
@@ -609,9 +606,9 @@ subroutine constitutive_LiAndItsTangents(Li, dLi_dS, dLi_dFi, S6, Fi, ipc, ip, e
  KinematicsLoop: do k = 1_pInt, phase_Nkinematics(material_phase(ipc,ip,el))
    kinematicsType: select case (phase_kinematics(k,material_phase(ipc,ip,el)))
      case (KINEMATICS_cleavage_opening_ID) kinematicsType
-       call kinematics_cleavage_opening_LiAndItsTangent(my_Li, my_dLi_dS, S6, ipc, ip, el)
+       call kinematics_cleavage_opening_LiAndItsTangent(my_Li, my_dLi_dS, math_6toSym33(S6), ipc, ip, el)
      case (KINEMATICS_slipplane_opening_ID) kinematicsType
-       call kinematics_slipplane_opening_LiAndItsTangent(my_Li, my_dLi_dS, S6, ipc, ip, el)
+       call kinematics_slipplane_opening_LiAndItsTangent(my_Li, my_dLi_dS, math_6toSym33(S6), ipc, ip, el)
      case (KINEMATICS_thermal_expansion_ID) kinematicsType
        call kinematics_thermal_expansion_LiAndItsTangent(my_Li, my_dLi_dS, ipc, ip, el)
      case default kinematicsType
@@ -788,8 +785,7 @@ subroutine constitutive_collectDotState(S6, FeArray, Fi, FpArray, subdt, subfrac
    math_sym33to6, &
    math_mul33x33
  use mesh, only: &
-   mesh_NcpElems, &
-   mesh_maxNips
+   theMesh
  use material, only: &
    phasememberAt, &
    phase_plasticityInstance, &
@@ -840,9 +836,9 @@ subroutine constitutive_collectDotState(S6, FeArray, Fi, FpArray, subdt, subfrac
    el                                                                                               !< element
  real(pReal),  intent(in) :: &
    subdt                                                                                            !< timestep
- real(pReal),  intent(in), dimension(homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+ real(pReal),  intent(in), dimension(homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    subfracArray                                                                                     !< subfraction of timestep
- real(pReal),  intent(in), dimension(3,3,homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+ real(pReal),  intent(in), dimension(3,3,homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    FeArray, &                                                                                       !< elastic deformation gradient
    FpArray                                                                                          !< plastic deformation gradient
  real(pReal),  intent(in), dimension(3,3) :: &
@@ -899,7 +895,7 @@ subroutine constitutive_collectDotState(S6, FeArray, Fi, FpArray, subdt, subfrac
    sourceType: select case (phase_source(s,material_phase(ipc,ip,el)))
 
      case (SOURCE_damage_anisoBrittle_ID) sourceType
-       call source_damage_anisoBrittle_dotState (S6, ipc, ip, el) !< correct stress?
+       call source_damage_anisoBrittle_dotState (math_6toSym33(S6), ipc, ip, el) !< correct stress?
 
      case (SOURCE_damage_isoDuctile_ID) sourceType
        call source_damage_isoDuctile_dotState   (         ipc, ip, el)
@@ -1002,8 +998,7 @@ function constitutive_postResults(S6, Fi, FeArray, ipc, ip, el)
   math_6toSym33, &
   math_mul33x33
  use mesh, only: &
-   mesh_NcpElems, &
-   mesh_maxNips
+   theMesh
  use material, only: &
    phasememberAt, &
    phase_plasticityInstance, &
@@ -1059,7 +1054,7 @@ function constitutive_postResults(S6, Fi, FeArray, ipc, ip, el)
    constitutive_postResults
  real(pReal),  intent(in), dimension(3,3) :: &
    Fi                                                                                               !< intermediate deformation gradient
- real(pReal),  intent(in), dimension(3,3,homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+ real(pReal),  intent(in), dimension(3,3,homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    FeArray                                                                                          !< elastic deformation gradient
  real(pReal),  intent(in), dimension(6) :: &
    S6                                                                                               !< 2nd Piola Kirchhoff stress (vector notation)
@@ -1121,16 +1116,18 @@ function constitutive_postResults(S6, Fi, FeArray, ipc, ip, el)
  SourceLoop: do s = 1_pInt, phase_Nsources(material_phase(ipc,ip,el))
    startPos = endPos + 1_pInt
    endPos = endPos + sourceState(material_phase(ipc,ip,el))%p(s)%sizePostResults
+   of = phasememberAt(ipc,ip,el)
    sourceType: select case (phase_source(s,material_phase(ipc,ip,el)))
      case (SOURCE_damage_isoBrittle_ID) sourceType
-       constitutive_postResults(startPos:endPos) = source_damage_isoBrittle_postResults(ipc, ip, el)
+       constitutive_postResults(startPos:endPos) = source_damage_isoBrittle_postResults(material_phase(ipc,ip,el),of)
      case (SOURCE_damage_isoDuctile_ID) sourceType
-       constitutive_postResults(startPos:endPos) = source_damage_isoDuctile_postResults(ipc, ip, el)
+       constitutive_postResults(startPos:endPos) = source_damage_isoDuctile_postResults(material_phase(ipc,ip,el),of)
      case (SOURCE_damage_anisoBrittle_ID) sourceType
-       constitutive_postResults(startPos:endPos) = source_damage_anisoBrittle_postResults(ipc, ip, el)
+       constitutive_postResults(startPos:endPos) = source_damage_anisoBrittle_postResults(material_phase(ipc,ip,el),of)
      case (SOURCE_damage_anisoDuctile_ID) sourceType
-       constitutive_postResults(startPos:endPos) = source_damage_anisoDuctile_postResults(ipc, ip, el)
+       constitutive_postResults(startPos:endPos) = source_damage_anisoDuctile_postResults(material_phase(ipc,ip,el),of)
    end select sourceType
+
  enddo SourceLoop
 
 end function constitutive_postResults

src/crystallite.f90

@@ -17,8 +17,6 @@ module crystallite
  use FEsolving, only:  &
    FEsolving_execElem, &
    FEsolving_execIP
- use mesh, only: &
-   mesh_element
  use material, only: &
    homogenization_Ngrains
 
@@ -157,10 +155,8 @@ subroutine crystallite_init
    math_inv33, &
    math_mul33x33
  use mesh, only: &
-   mesh_element, &
-   mesh_NcpElems, &
-   mesh_maxNips, &
-   mesh_maxNipNeighbors
+   theMesh, &
+   mesh_element
  use IO, only: &
    IO_timeStamp, &
    IO_stringValue, &
@@ -198,8 +194,8 @@ subroutine crystallite_init
 #include "compilation_info.f90"
 
  cMax = homogenization_maxNgrains
- iMax = mesh_maxNips
- eMax = mesh_NcpElems
+ iMax = theMesh%elem%nIPs
+ eMax = theMesh%nElems
 
 ! ---------------------------------------------------------------------------
 ! ToDo (when working on homogenization): should be 3x3 tensor called S
@@ -330,7 +326,7 @@ subroutine crystallite_init
        case(elasmatrix_ID)
          mySize = 36_pInt
        case(neighboringip_ID,neighboringelement_ID)
-         mySize = mesh_maxNipNeighbors
+         mySize = theMesh%elem%nIPneighbors
        case default
          mySize = 0_pInt
      end select
@@ -411,7 +407,7 @@ subroutine crystallite_init
    write(6,'(a42,1x,i10)') '    # of elements:                       ', eMax
    write(6,'(a42,1x,i10)') 'max # of integration points/element:     ', iMax
    write(6,'(a42,1x,i10)') 'max # of constituents/integration point: ', cMax
-   write(6,'(a42,1x,i10)') 'max # of neigbours/integration point:    ', mesh_maxNipNeighbors
+   write(6,'(a42,1x,i10)') 'max # of neigbours/integration point:    ', theMesh%elem%nIPneighbors
    write(6,'(a42,1x,i10)') '    # of nonlocal constituents:          ',count(.not. crystallite_localPlasticity)
    flush(6)
  endif
@@ -426,7 +422,7 @@ end subroutine crystallite_init
 !--------------------------------------------------------------------------------------------------
 !> @brief calculate stress (P)
 !--------------------------------------------------------------------------------------------------
-function crystallite_stress()
+function crystallite_stress(a)
  use prec, only: &
    tol_math_check, &
    dNeq0
@@ -454,10 +450,8 @@ function crystallite_stress()
    math_6toSym33, &
    math_sym33to6
  use mesh, only: &
-   mesh_NcpElems, &
-   mesh_element, &
-   mesh_maxNips, &
-   FE_geomtype
+   theMesh, &
+   mesh_element
  use material, only: &
    homogenization_Ngrains, &
    plasticState, &
@@ -470,7 +464,8 @@ function crystallite_stress()
    constitutive_LiAndItsTangents
 
  implicit none
- logical, dimension(mesh_maxNips,mesh_NcpElems) :: crystallite_stress
+ logical, dimension(theMesh%elem%nIPs,theMesh%Nelems) :: crystallite_stress
+ real(pReal), intent(in), optional :: a                                                             !ToDo: for some reason this prevents an internal compiler error in GNU. Very strange
  real(pReal) :: &
    formerSubStep
  integer(pInt) :: &
@@ -537,7 +532,7 @@ function crystallite_stress()
    endIP   = startIP
  else singleRun
    startIP = 1_pInt
-   endIP = mesh_maxNips
+   endIP = theMesh%elem%nIPs
  endif singleRun
 
  NiterationCrystallite = 0_pInt
@@ -723,8 +718,7 @@ subroutine crystallite_stressTangent()
    math_invert2, &
    math_det33
  use mesh, only: &
-   mesh_element, &
-   FE_geomtype
+   mesh_element
  use material, only: &
    homogenization_Ngrains
  use constitutive, only:  &
@@ -923,7 +917,7 @@ function crystallite_push33ToRef(ipc,ip,el, tensor33)
   math_inv33, &
   math_EulerToR
  use material, only: &
-  material_EulerAngles
+  material_EulerAngles                                                                              ! ToDo: Why stored? We also have crystallite_orientation0
 
  implicit none
  real(pReal), dimension(3,3) :: crystallite_push33ToRef
@@ -954,13 +948,10 @@ function crystallite_postResults(ipc, ip, el)
    inDeg, &
    math_6toSym33
  use mesh, only: &
+   theMesh, &
    mesh_element, &
    mesh_ipVolume, &
-   mesh_maxNipNeighbors, &
-   mesh_ipNeighborhood, &
-   FE_NipNeighbors, &
-   FE_geomtype, &
-   FE_celltype
+   mesh_ipNeighborhood
  use material, only: &
    plasticState, &
    sourceState, &
@@ -1064,14 +1055,14 @@ function crystallite_postResults(ipc, ip, el)
        mySize = 36_pInt
        crystallite_postResults(c+1:c+mySize) = reshape(constitutive_homogenizedC(ipc,ip,el),[mySize])
      case(neighboringelement_ID)
-       mySize = mesh_maxNipNeighbors
+       mySize = theMesh%elem%nIPneighbors
        crystallite_postResults(c+1:c+mySize) = 0.0_pReal
-       forall (n = 1_pInt:FE_NipNeighbors(FE_celltype(FE_geomtype(mesh_element(2,el))))) &
+       forall (n = 1_pInt:mySize) &
          crystallite_postResults(c+n) = real(mesh_ipNeighborhood(1,n,ip,el),pReal)
      case(neighboringip_ID)
-       mySize = mesh_maxNipNeighbors
+       mySize = theMesh%elem%nIPneighbors
        crystallite_postResults(c+1:c+mySize) = 0.0_pReal
-       forall (n = 1_pInt:FE_NipNeighbors(FE_celltype(FE_geomtype(mesh_element(2,el))))) &
+       forall (n = 1_pInt:mySize) &
          crystallite_postResults(c+n) = real(mesh_ipNeighborhood(2,n,ip,el),pReal)
    end select
    c = c + mySize
@@ -1748,9 +1739,8 @@ end subroutine integrateStateEuler
 !--------------------------------------------------------------------------------------------------
 subroutine integrateStateAdaptiveEuler()
  use mesh, only: &
-   mesh_element, &
-   mesh_NcpElems, &
-   mesh_maxNips
+   theMesh, &
+   mesh_element
  use material, only: &
    homogenization_Ngrains, &
    plasticState, &
@@ -1774,11 +1764,11 @@ subroutine integrateStateAdaptiveEuler()
    
   ! ToDo: MD: once all constitutives use allocate state, attach residuum arrays to the state in case of adaptive Euler
  real(pReal), dimension(constitutive_plasticity_maxSizeDotState,            &
-                        homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+                        homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    residuum_plastic
  real(pReal), dimension(constitutive_source_maxSizeDotState,&
                         maxval(phase_Nsources), &
-                        homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+                        homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    residuum_source
 
 !--------------------------------------------------------------------------------------------------
@@ -1925,8 +1915,7 @@ end subroutine integrateStateRK4
 subroutine integrateStateRKCK45()
  use mesh, only: &
    mesh_element, &
-   mesh_NcpElems, &
-   mesh_maxNips
+   theMesh
  use material, only: &
    homogenization_Ngrains, &
    plasticState, &
@@ -1973,11 +1962,11 @@ subroutine integrateStateRKCK45()
    ! ToDo: MD: once all constitutives use allocate state, attach residuum arrays to the state in case of RKCK45
 
  real(pReal), dimension(constitutive_plasticity_maxSizeDotState,            &
-                        homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+                        homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    residuum_plastic                                                                         ! relative residuum from evolution in microstructure
  real(pReal), dimension(constitutive_source_maxSizeDotState, &
                         maxval(phase_Nsources), &
-                        homogenization_maxNgrains,mesh_maxNips,mesh_NcpElems) :: &
+                        homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems) :: &
    residuum_source                                                                   ! relative residuum from evolution in microstructure
 
 
@@ -2122,7 +2111,8 @@ end subroutine nonlocalConvergenceCheck
 !> @details: For explicitEuler, RK4 and RKCK45, adaptive Euler and FPI have their on criteria
 !--------------------------------------------------------------------------------------------------
 subroutine setConvergenceFlag()
-
+ use mesh, only: &
+   mesh_element
  implicit none
  integer(pInt) :: &
    e, &                                                                                             !< element index in element loop
@@ -2162,7 +2152,8 @@ end subroutine setConvergenceFlag
 !> @brief Standard forwarding of state as state = state0 + dotState * (delta t)
 !--------------------------------------------------------------------------------------------------
 subroutine update_stress(timeFraction)
-
+ use mesh, only: &
+   mesh_element
  implicit none
  real(pReal), intent(in) :: &
    timeFraction
@@ -2194,6 +2185,8 @@ end subroutine update_stress
 !> @brief tbd
 !--------------------------------------------------------------------------------------------------
 subroutine update_dependentState()
+ use mesh, only: &
+   mesh_element
  use constitutive, only: &
    constitutive_dependentState => constitutive_microstructure
 
@@ -2225,6 +2218,8 @@ subroutine update_state(timeFraction)
    sourceState, &
    phase_Nsources, &
    phaseAt, phasememberAt
+ use mesh, only: &
+   mesh_element
 
  implicit none
  real(pReal), intent(in) :: &
@@ -2274,6 +2269,8 @@ subroutine update_dotState(timeFraction)
    sourceState, &
    phaseAt, phasememberAt, &
    phase_Nsources
+ use mesh, only: &
+   mesh_element
  use constitutive, only: &
    constitutive_collectDotState
 
@@ -2327,6 +2324,8 @@ subroutine update_deltaState
    IEEE_arithmetic
  use prec, only: &
    dNeq0
+ use mesh, only: &
+   mesh_element
  use material, only: &
    plasticState, &
    sourceState, &
@@ -2422,6 +2421,8 @@ logical function stateJump(ipc,ip,el)
    sourceState, &
    phase_Nsources, &
    phaseAt, phasememberAt
+ use mesh, only: &
+   mesh_element
  use constitutive, only: &
    constitutive_collectDeltaState
  use math, only: &

src/damage_local.f90

@@ -225,6 +225,7 @@ subroutine damage_local_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip, el
    homogenization_Ngrains, &
    mappingHomogenization, &
    phaseAt, &
+   phasememberAt, &
    phase_source, &
    phase_Nsources, &
    SOURCE_damage_isoBrittle_ID, &
@@ -249,7 +250,8 @@ subroutine damage_local_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip, el
  integer(pInt) :: &
    phase, &
    grain, &
-   source
+   source, &
+   constituent
  real(pReal) :: &
    phiDot, dPhiDot_dPhi, localphiDot, dLocalphiDot_dPhi  
 
@@ -257,19 +259,20 @@ subroutine damage_local_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip, el
  dPhiDot_dPhi = 0.0_pReal
  do grain = 1, homogenization_Ngrains(mappingHomogenization(2,ip,el))
    phase = phaseAt(grain,ip,el)
+   constituent = phasememberAt(grain,ip,el)
    do source = 1, phase_Nsources(phase)
      select case(phase_source(source,phase))                                                   
        case (SOURCE_damage_isoBrittle_ID)
-        call source_damage_isobrittle_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_isobrittle_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_isoDuctile_ID)
-        call source_damage_isoductile_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_isoductile_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_anisoBrittle_ID)
-        call source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_anisoDuctile_ID)
-        call source_damage_anisoductile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_anisoductile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case default
         localphiDot = 0.0_pReal

src/damage_nonlocal.f90

@@ -186,6 +186,7 @@ subroutine damage_nonlocal_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip,
    homogenization_Ngrains, &
    mappingHomogenization, &
    phaseAt, &
+   phasememberAt, &
    phase_source, &
    phase_Nsources, &
    SOURCE_damage_isoBrittle_ID, &
@@ -210,7 +211,8 @@ subroutine damage_nonlocal_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip,
  integer(pInt) :: &
    phase, &
    grain, &
-   source
+   source, &
+   constituent
  real(pReal) :: &
    phiDot, dPhiDot_dPhi, localphiDot, dLocalphiDot_dPhi  
 
@@ -218,19 +220,20 @@ subroutine damage_nonlocal_getSourceAndItsTangent(phiDot, dPhiDot_dPhi, phi, ip,
  dPhiDot_dPhi = 0.0_pReal
  do grain = 1, homogenization_Ngrains(mappingHomogenization(2,ip,el))
    phase = phaseAt(grain,ip,el)
+   constituent = phasememberAt(grain,ip,el)
    do source = 1_pInt, phase_Nsources(phase)
      select case(phase_source(source,phase))                                                   
        case (SOURCE_damage_isoBrittle_ID)
-        call source_damage_isobrittle_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_isobrittle_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_isoDuctile_ID)
-        call source_damage_isoductile_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_isoductile_getRateAndItsTangent  (localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_anisoBrittle_ID)
-        call source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case (SOURCE_damage_anisoDuctile_ID)
-        call source_damage_anisoductile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, grain, ip,  el)
+        call source_damage_anisoductile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
 
        case default
         localphiDot = 0.0_pReal

src/element.f90

@@ -0,0 +1,921 @@
+!--------------------------------------------------------------------------------------------------
+!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
+!> @author Christoph Koords, Max-Planck-Institut für Eisenforschung GmbH
+!--------------------------------------------------------------------------------------------------
+module element
+ use prec, only: &
+   pInt, &
+   pReal
+
+ implicit none
+ private 
+
+!---------------------------------------------------------------------------------------------------
+!> Properties of a single element (the element used in the mesh)
+!---------------------------------------------------------------------------------------------------
+ type, public :: tElement
+   integer(pInt) :: &
+     elemType, &
+     geomType, &                                                                                    ! geometry type (same for same dimension and same number of integration points)
+     cellType, &
+     Nnodes, &
+     Ncellnodes, &
+     NcellnodesPerCell, &
+     nIPs, &
+     nIPneighbors, &                                                                                   ! ToDo: MD: Do all IPs in one element type have the same number of neighbors?
+     maxNnodeAtIP
+   integer(pInt), dimension(:,:), allocatable :: &
+     Cell, &                                                                                        ! intra-element (cell) nodes that constitute a cell
+     NnodeAtIP, &
+     IPneighbor, &
+     cellFace
+   real(pReal), dimension(:,:), allocatable :: &
+ ! center of gravity of the weighted nodes gives the position of the cell node.
+ ! example: face-centered cell node with face nodes 1,2,5,6 to be used in,
+ !          e.g., an 8 node element, would be encoded:
+ !          1, 1, 0, 0, 1, 1, 0, 0
+     cellNodeParentNodeWeights
+   contains
+     procedure :: init => tElement_init
+ end type
+
+ integer(pInt), parameter, private :: &
+   NELEMTYPE = 13_pInt
+
+ integer(pInt), dimension(NelemType), parameter, private :: NNODE = &
+ int([ &
+      3, & ! 2D 3node 1ip
+      6, & ! 2D 6node 3ip
+      4, & ! 2D 4node 4ip
+      8, & ! 2D 8node 9ip
+      8, & ! 2D 8node 4ip
+      !--------------------
+      4, & ! 3D 4node 1ip
+      5, & ! 3D 5node 4ip
+     10, & ! 3D 10node 4ip
+      6, & ! 3D 6node 6ip
+      8, & ! 3D 8node 1ip
+      8, & ! 3D 8node 8ip
+     20, & ! 3D 20node 8ip
+     20  & ! 3D 20node 27ip
+  ],pInt)                                                                                           !< number of nodes that constitute a specific type of element
+
+ integer(pInt), dimension(NelemType), parameter, public :: GEOMTYPE = &
+ int([ &
+      1, & ! 2D 3node 1ip
+      2, & ! 2D 6node 3ip
+      3, & ! 2D 4node 4ip
+      4, & ! 2D 8node 9ip
+      3, & ! 2D 8node 4ip
+      !--------------------
+      5, & ! 3D 4node 1ip
+      6, & ! 3D 5node 4ip
+      6, & ! 3D 10node 4ip
+      7, & ! 3D 6node 6ip
+      8, & ! 3D 8node 1ip
+      9, & ! 3D 8node 8ip
+      9, & ! 3D 20node 8ip
+     10  & ! 3D 20node 27ip
+  ],pInt)                                                                                           !< geometry type of particular element type
+
+ !integer(pInt), dimension(maxval(geomType)), parameter, private :: NCELLNODE = &                   ! Intel 16.0 complains
+ integer(pInt), dimension(10), parameter, private :: NCELLNODE = &
+ int([ &
+      3, &
+      7, &
+      9, &
+     16, &
+      4, &
+     15, &
+     21, &
+      8, &
+     27, &
+     64  &
+  ],pInt)                                                                                           !< number of cell nodes in a specific geometry type
+
+ !integer(pInt), dimension(maxval(geomType)), parameter, private :: NIP = &                         ! Intel 16.0 complains
+ integer(pInt), dimension(10), parameter, private :: NIP = &
+ int([ &
+      1, & 
+      3, & 
+      4, & 
+      9, & 
+      1, & 
+      4, & 
+      6, & 
+      1, & 
+      8, & 
+     27  & 
+  ],pInt)                                                                                           !< number of IPs in a specific geometry type
+
+ !integer(pInt), dimension(maxval(geomType)), parameter, private  :: CELLTYPE = &                   ! Intel 16.0 complains
+ integer(pInt), dimension(10), parameter, private  :: CELLTYPE = &                                  !< cell type that is used by each geometry type
+ int([ &
+      1, & ! 2D 3node
+      2, & ! 2D 4node
+      2, & ! 2D 4node
+      2, & ! 2D 4node
+      3, & ! 3D 4node
+      4, & ! 3D 8node
+      4, & ! 3D 8node
+      4, & ! 3D 8node
+      4, & ! 3D 8node
+      4  & ! 3D 8node
+  ],pInt)
+ 
+ !integer(pInt), dimension(maxval(cellType)), parameter, private :: nIPNeighbor = &                 ! causes problem with Intel 16.0
+ integer(pInt), dimension(4), parameter, private :: NIPNEIGHBOR = &                                 !< number of ip neighbors / cell faces in a specific cell type
+ int([&
+      3, & ! 2D 3node
+      4, & ! 2D 4node
+      4, & ! 3D 4node
+      6  & ! 3D 8node
+  ],pInt)
+
+ !integer(pInt), dimension(maxval(cellType)), parameter, private :: NCELLNODESPERCELLFACE = &            
+ integer(pInt), dimension(4), parameter, private :: NCELLNODEPERCELLFACE = &                        !< number of cell nodes in a specific cell type
+ int([ &
+      2, & ! 2D 3node
+      2, & ! 2D 4node
+      3, & ! 3D 4node
+      4  & ! 3D 8node
+  ],pInt)
+
+ !integer(pInt), dimension(maxval(geomType)), parameter, private :: maxNodeAtIP = &                 ! causes problem with Intel 16.0
+ integer(pInt), dimension(10), parameter, private :: maxNnodeAtIP = &                               !< maximum number of parent nodes that belong to an IP for a specific type of element
+ int([ &
+      3, &
+      1, &
+      1, &
+      2, &
+      4, &
+      1, &
+      1, &
+      8, &
+      1, &
+      4  &
+  ],pInt)
+
+
+ !integer(pInt), dimension(maxval(CELLTYPE)), parameter, private  :: NCELLNODEPERCELL = &           ! Intel 16.0 complains
+ integer(pInt), dimension(4), parameter, private :: NCELLNODEPERCELL = &                            !< number of cell nodes in a specific cell type
+ int([ &
+      3, & ! 2D 3node
+      4, & ! 2D 4node
+      4, & ! 3D 4node
+      8  & ! 3D 8node
+  ],pInt)
+
+ integer(pInt), dimension(maxNnodeAtIP(1),nIP(1)), parameter, private :: NnodeAtIP1 = &
+    reshape(int([&
+    1,2,3   &
+    ],pInt),[maxNnodeAtIP(1),nIP(1)])
+
+ integer(pInt), dimension(maxNnodeAtIP(2),nIP(2)), parameter, private :: NnodeAtIP2 = &
+    reshape(int([&
+    1,  &
+    2,  &
+    3   &
+    ],pInt),[maxNnodeAtIP(2),nIP(2)])
+
+ integer(pInt), dimension(maxNnodeAtIP(3),nIP(3)), parameter, private :: NnodeAtIP3 = &
+    reshape(int([&
+    1,  &
+    2,  &
+    4,  &
+    3   &
+    ],pInt),[maxNnodeAtIP(3),nIP(3)])
+
+ integer(pInt), dimension(maxNnodeAtIP(4),nIP(4)), parameter, private :: NnodeAtIP4 = &
+    reshape(int([&
+    1,0,  &
+    1,2,  &
+    2,0,  &
+    1,4,  &
+    0,0,  &
+    2,3,  &
+    4,0,  &
+    3,4,  &
+    3,0   &
+    ],pInt),[maxNnodeAtIP(4),nIP(4)])
+
+ integer(pInt), dimension(maxNnodeAtIP(5),nIP(5)), parameter, private :: NnodeAtIP5 = &
+    reshape(int([&
+    1,2,3,4   &
+    ],pInt),[maxNnodeAtIP(5),nIP(5)])
+
+ integer(pInt), dimension(maxNnodeAtIP(6),nIP(6)), parameter, private :: NnodeAtIP6 = &
+    reshape(int([&
+    1,  &
+    2,  &
+    3,  &
+    4   &
+    ],pInt),[maxNnodeAtIP(6),nIP(6)])
+
+ integer(pInt), dimension(maxNnodeAtIP(7),nIP(7)), parameter, private :: NnodeAtIP7 = &
+    reshape(int([&
+    1,  &
+    2,  &
+    3,  &
+    4,  &
+    5,  &
+    6   &
+    ],pInt),[maxNnodeAtIP(7),nIP(7)])
+
+ integer(pInt), dimension(maxNnodeAtIP(8),nIP(8)), parameter, private :: NnodeAtIP8 = &
+    reshape(int([&
+    1,2,3,4,5,6,7,8   &
+    ],pInt),[maxNnodeAtIP(8),nIP(8)])
+
+ integer(pInt), dimension(maxNnodeAtIP(9),nIP(9)), parameter, private :: NnodeAtIP9 = &
+    reshape(int([&
+    1,  &
+    2,  &
+    4,  &
+    3,  &
+    5,  &
+    6,  &
+    8,  &
+    7   &
+    ],pInt),[maxNnodeAtIP(9),nIP(9)])
+
+ integer(pInt), dimension(maxNnodeAtIP(10),nIP(10)), parameter, private :: NnodeAtIP10 = &
+    reshape(int([&
+    1,0, 0,0,  &
+    1,2, 0,0,  &
+    2,0, 0,0,  &
+    1,4, 0,0,  &
+    1,3, 2,4,  &
+    2,3, 0,0,  &
+    4,0, 0,0,  &
+    3,4, 0,0,  &
+    3,0, 0,0,  &
+    1,5, 0,0,  &
+    1,6, 2,5,  &
+    2,6, 0,0,  &
+    1,8, 4,5,  &
+    0,0, 0,0,  &
+    2,7, 3,6,  &
+    4,8, 0,0,  &
+    3,8, 4,7,  &
+    3,7, 0,0,  &
+    5,0, 0,0,  &
+    5,6, 0,0,  &
+    6,0, 0,0,  &
+    5,8, 0,0,  &
+    5,7, 6,8,  &
+    6,7, 0,0,  &
+    8,0, 0,0,  &
+    7,8, 0,0,  &
+    7,0, 0,0   &
+    ],pInt),[maxNnodeAtIP(10),nIP(10)])
+
+ ! *** FE_ipNeighbor ***
+ ! is a list of the neighborhood of each IP.
+ ! It is sorted in (local) +x,-x, +y,-y, +z,-z direction.
+ ! Positive integers denote an intra-FE IP identifier.
+ ! Negative integers denote the interface behind which the neighboring (extra-FE) IP will be located.
+
+
+ integer(pInt), dimension(nIPneighbor(cellType(1)),nIP(1)), parameter, private :: IPneighbor1 = &
+    reshape(int([&
+    -2,-3,-1   &
+    ],pInt),[nIPneighbor(cellType(1)),nIP(1)])
+
+ integer(pInt), dimension(nIPneighbor(cellType(2)),nIP(2)), parameter, private :: IPneighbor2 = &
+     reshape(int([&
+      2,-3, 3,-1,  &
+     -2, 1, 3,-1,  &
+      2,-3,-2, 1   &
+    ],pInt),[nIPneighbor(cellType(2)),nIP(2)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(3)),nIP(3)), parameter, private :: IPneighbor3 = &
+     reshape(int([&
+      2,-4, 3,-1,  &
+     -2, 1, 4,-1,  &
+      4,-4,-3, 1,  &
+     -2, 3,-3, 2   &
+    ],pInt),[nIPneighbor(cellType(3)),nIP(3)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(4)),nIP(4)), parameter, private :: IPneighbor4 = &
+     reshape(int([&
+      2,-4, 4,-1,  &
+      3, 1, 5,-1,  &
+     -2, 2, 6,-1,  &
+      5,-4, 7, 1,  &
+      6, 4, 8, 2,  &
+     -2, 5, 9, 3,  &
+      8,-4,-3, 4,  &
+      9, 7,-3, 5,  &
+     -2, 8,-3, 6   &
+    ],pInt),[nIPneighbor(cellType(4)),nIP(4)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(5)),nIP(5)), parameter, private :: IPneighbor5 = &
+     reshape(int([&
+     -1,-2,-3,-4   &
+    ],pInt),[nIPneighbor(cellType(5)),nIP(5)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(6)),nIP(6)), parameter, private :: IPneighbor6 = &
+     reshape(int([&
+      2,-4, 3,-2, 4,-1,  &
+     -2, 1, 3,-2, 4,-1,  &
+      2,-4,-3, 1, 4,-1,  &
+      2,-4, 3,-2,-3, 1   &
+    ],pInt),[nIPneighbor(cellType(6)),nIP(6)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(7)),nIP(7)), parameter, private :: IPneighbor7 = &
+     reshape(int([&
+      2,-4, 3,-2, 4,-1,  &
+     -3, 1, 3,-2, 5,-1,  &
+      2,-4,-3, 1, 6,-1,  &
+      5,-4, 6,-2,-5, 1,  &
+     -3, 4, 6,-2,-5, 2,  &
+      5,-4,-3, 4,-5, 3   &
+    ],pInt),[nIPneighbor(cellType(7)),nIP(7)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(8)),nIP(8)), parameter, private :: IPneighbor8 = &
+     reshape(int([&
+     -3,-5,-4,-2,-6,-1   &
+    ],pInt),[nIPneighbor(cellType(8)),nIP(8)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(9)),nIP(9)), parameter, private :: IPneighbor9 = &
+     reshape(int([&
+      2,-5, 3,-2, 5,-1,  &
+     -3, 1, 4,-2, 6,-1,  &
+      4,-5,-4, 1, 7,-1,  &
+     -3, 3,-4, 2, 8,-1,  &
+      6,-5, 7,-2,-6, 1,  &
+     -3, 5, 8,-2,-6, 2,  &
+      8,-5,-4, 5,-6, 3,  &
+     -3, 7,-4, 6,-6, 4   &
+    ],pInt),[nIPneighbor(cellType(9)),nIP(9)])
+ 
+ integer(pInt), dimension(nIPneighbor(cellType(10)),nIP(10)), parameter, private :: IPneighbor10 = &
+     reshape(int([&
+      2,-5, 4,-2,10,-1,  &
+      3, 1, 5,-2,11,-1,  &
+     -3, 2, 6,-2,12,-1,  &
+      5,-5, 7, 1,13,-1,  &
+      6, 4, 8, 2,14,-1,  &
+     -3, 5, 9, 3,15,-1,  &
+      8,-5,-4, 4,16,-1,  &
+      9, 7,-4, 5,17,-1,  &
+     -3, 8,-4, 6,18,-1,  &
+     11,-5,13,-2,19, 1,  &
+     12,10,14,-2,20, 2,  &
+     -3,11,15,-2,21, 3,  &
+     14,-5,16,10,22, 4,  &
+     15,13,17,11,23, 5,  &
+     -3,14,18,12,24, 6,  &
+     17,-5,-4,13,25, 7,  &
+     18,16,-4,14,26, 8,  &
+     -3,17,-4,15,27, 9,  &
+     20,-5,22,-2,-6,10,  &
+     21,19,23,-2,-6,11,  &
+     -3,20,24,-2,-6,12,  &
+     23,-5,25,19,-6,13,  &
+     24,22,26,20,-6,14,  &
+     -3,23,27,21,-6,15,  &
+     26,-5,-4,22,-6,16,  &
+     27,25,-4,23,-6,17,  &
+     -3,26,-4,24,-6,18   &
+    ],pInt),[nIPneighbor(cellType(10)),nIP(10)])
+
+
+ real(pReal), dimension(nNode(1),NcellNode(geomType(1))), parameter :: cellNodeParentNodeWeights1 = &
+    reshape(real([&
+    1, 0, 0,  &
+    0, 1, 0,  &
+    0, 0, 1   &
+    ],pReal),[nNode(1),NcellNode(geomType(1))]) ! 2D 3node 1ip
+
+ real(pReal), dimension(nNode(2),NcellNode(geomType(2))), parameter :: cellNodeParentNodeWeights2 = &
+     reshape(real([&
+     1, 0, 0, 0, 0, 0,  &
+     0, 1, 0, 0, 0, 0,  &
+     0, 0, 1, 0, 0, 0,  &
+     0, 0, 0, 1, 0, 0,  &
+     0, 0, 0, 0, 1, 0,  &
+     0, 0, 0, 0, 0, 1,  &
+     1, 1, 1, 2, 2, 2   &
+    ],pReal),[nNode(2),NcellNode(geomType(2))]) ! 2D 6node 3ip
+
+ real(pReal), dimension(nNode(3),NcellNode(geomType(3))), parameter :: cellNodeParentNodeWeights3 = &
+    reshape(real([&
+    1, 0, 0, 0,  &
+    0, 1, 0, 0,  &
+    0, 0, 1, 0,  &
+    0, 0, 0, 1,  &
+    1, 1, 0, 0,  &
+    0, 1, 1, 0,  &
+    0, 0, 1, 1,  &
+    1, 0, 0, 1,  &
+    1, 1, 1, 1   &
+    ],pReal),[nNode(3),NcellNode(geomType(3))]) ! 2D 6node 3ip
+
+ real(pReal), dimension(nNode(4),NcellNode(geomType(4))), parameter :: cellNodeParentNodeWeights4 = &
+    reshape(real([&
+    1, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 1, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 1, 0, 0, 0, 0,  &
+    1, 0, 0, 0, 2, 0, 0, 0,  &
+    0, 1, 0, 0, 2, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 2, 0, 0,  &
+    0, 0, 1, 0, 0, 2, 0, 0,  &
+    0, 0, 1, 0, 0, 0, 2, 0,  &
+    0, 0, 0, 1, 0, 0, 2, 0,  &
+    0, 0, 0, 1, 0, 0, 0, 2,  &
+    1, 0, 0, 0, 0, 0, 0, 2,  &
+    4, 1, 1, 1, 8, 2, 2, 8,  &
+    1, 4, 1, 1, 8, 8, 2, 2,  &
+    1, 1, 4, 1, 2, 8, 8, 2,  &
+    1, 1, 1, 4, 2, 2, 8, 8   &
+    ],pReal),[nNode(4),NcellNode(geomType(4))])  ! 2D 8node 9ip
+
+ real(pReal), dimension(nNode(5),NcellNode(geomType(5))), parameter :: cellNodeParentNodeWeights5 = &
+    reshape(real([&
+    1, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 1, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 1, 0, 0, 0, 0,  &
+    0, 0, 0, 0, 1, 0, 0, 0,  &
+    0, 0, 0, 0, 0, 1, 0, 0,  &
+    0, 0, 0, 0, 0, 0, 1, 0,  &
+    0, 0, 0, 0, 0, 0, 0, 1,  &
+    1, 1, 1, 1, 2, 2, 2, 2   &
+    ],pReal),[nNode(5),NcellNode(geomType(5))])  ! 2D 8node 4ip
+
+ real(pReal), dimension(nNode(6),NcellNode(geomType(6))), parameter :: cellNodeParentNodeWeights6 = &
+    reshape(real([&
+    1, 0, 0, 0,  &
+    0, 1, 0, 0,  &
+    0, 0, 1, 0,  &
+    0, 0, 0, 1   &
+    ],pReal),[nNode(6),NcellNode(geomType(6))]) ! 3D 4node 1ip
+
+ real(pReal), dimension(nNode(7),NcellNode(geomType(7))), parameter :: cellNodeParentNodeWeights7 = &
+    reshape(real([&
+    1, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0,  &
+    0, 0, 1, 0, 0,  &
+    0, 0, 0, 1, 0,  &
+    1, 1, 0, 0, 0,  &
+    0, 1, 1, 0, 0,  &
+    1, 0, 1, 0, 0,  &
+    1, 0, 0, 1, 0,  &
+    0, 1, 0, 1, 0,  &
+    0, 0, 1, 1, 0,  &
+    1, 1, 1, 0, 0,  &
+    1, 1, 0, 1, 0,  &
+    0, 1, 1, 1, 0,  &
+    1, 0, 1, 1, 0,  &
+    0, 0, 0, 0, 1   &
+    ],pReal),[nNode(7),NcellNode(geomType(7))])  ! 3D 5node 4ip
+
+ real(pReal), dimension(nNode(8),NcellNode(geomType(8))), parameter :: cellNodeParentNodeWeights8 = &
+    reshape(real([&
+    1, 0, 0, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 1, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 1, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 0, 1, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 0, 0, 1, 0, 0, 0, 0,  &
+    0, 0, 0, 0, 0, 0, 1, 0, 0, 0,  &
+    0, 0, 0, 0, 0, 0, 0, 1, 0, 0,  &
+    0, 0, 0, 0, 0, 0, 0, 0, 1, 0,  &
+    0, 0, 0, 0, 0, 0, 0, 0, 0, 1,  &
+    1, 1, 1, 0, 2, 2, 2, 0, 0, 0,  &
+    1, 1, 0, 1, 2, 0, 0, 2, 2, 0,  &
+    0, 1, 1, 1, 0, 2, 0, 0, 2, 2,  &
+    1, 0, 1, 1, 0, 0, 2, 2, 0, 2,  &
+    3, 3, 3, 3, 4, 4, 4, 4, 4, 4   &
+    ],pReal),[nNode(8),NcellNode(geomType(8))])  ! 3D 10node 4ip
+
+ real(pReal), dimension(nNode(9),NcellNode(geomType(9))), parameter :: cellNodeParentNodeWeights9 = &
+    reshape(real([&
+    1, 0, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 0,  &
+    0, 0, 1, 0, 0, 0,  &
+    0, 0, 0, 1, 0, 0,  &
+    0, 0, 0, 0, 1, 0,  &
+    0, 0, 0, 0, 0, 1,  &
+    1, 1, 0, 0, 0, 0,  &
+    0, 1, 1, 0, 0, 0,  &
+    1, 0, 1, 0, 0, 0,  &
+    1, 0, 0, 1, 0, 0,  &
+    0, 1, 0, 0, 1, 0,  &
+    0, 0, 1, 0, 0, 1,  &
+    0, 0, 0, 1, 1, 0,  &
+    0, 0, 0, 0, 1, 1,  &
+    0, 0, 0, 1, 0, 1,  &
+    1, 1, 1, 0, 0, 0,  &
+    1, 1, 0, 1, 1, 0,  &
+    0, 1, 1, 0, 1, 1,  &
+    1, 0, 1, 1, 0, 1,  &
+    0, 0, 0, 1, 1, 1,  &
+    1, 1, 1, 1, 1, 1   &
+    ],pReal),[nNode(9),NcellNode(geomType(9))])  ! 3D 6node 6ip
+
+ real(pReal), dimension(nNode(10),NcellNode(geomType(10))), parameter :: cellNodeParentNodeWeights10 = &
+    reshape(real([&
+    1, 0, 0, 0, 0, 0, 0, 0,  &
+    0, 1, 0, 0, 0, 0, 0, 0,  &
+    0, 0, 1, 0, 0, 0, 0, 0,  &
+    0, 0, 0, 1, 0, 0, 0, 0,  &
+    0, 0, 0, 0, 1, 0, 0, 0,  &
+    0, 0, 0, 0, 0, 1, 0, 0,  &
+    0, 0, 0, 0, 0, 0, 1, 0,  &
+    0, 0, 0, 0, 0, 0, 0, 1   &
+    ],pReal),[nNode(10),NcellNode(geomType(10))])  ! 3D 8node 1ip
+ 
+ real(pReal), dimension(nNode(11),NcellNode(geomType(11))), parameter :: cellNodeParentNodeWeights11 = &
+    reshape(real([&
+    1, 0, 0, 0,  0, 0, 0, 0,  &   !
+    0, 1, 0, 0,  0, 0, 0, 0,  &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  &   !
+    0, 0, 0, 0,  1, 0, 0, 0,  &   !  5
+    0, 0, 0, 0,  0, 1, 0, 0,  &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  &   !
+    0, 0, 0, 0,  0, 0, 0, 1,  &   !
+    1, 1, 0, 0,  0, 0, 0, 0,  &   !
+    0, 1, 1, 0,  0, 0, 0, 0,  &   ! 10
+    0, 0, 1, 1,  0, 0, 0, 0,  &   !
+    1, 0, 0, 1,  0, 0, 0, 0,  &   !
+    1, 0, 0, 0,  1, 0, 0, 0,  &   !
+    0, 1, 0, 0,  0, 1, 0, 0,  &   !
+    0, 0, 1, 0,  0, 0, 1, 0,  &   ! 15
+    0, 0, 0, 1,  0, 0, 0, 1,  &   !
+    0, 0, 0, 0,  1, 1, 0, 0,  &   !
+    0, 0, 0, 0,  0, 1, 1, 0,  &   !
+    0, 0, 0, 0,  0, 0, 1, 1,  &   !
+    0, 0, 0, 0,  1, 0, 0, 1,  &   ! 20
+    1, 1, 1, 1,  0, 0, 0, 0,  &   !
+    1, 1, 0, 0,  1, 1, 0, 0,  &   !
+    0, 1, 1, 0,  0, 1, 1, 0,  &   !
+    0, 0, 1, 1,  0, 0, 1, 1,  &   !
+    1, 0, 0, 1,  1, 0, 0, 1,  &   ! 25
+    0, 0, 0, 0,  1, 1, 1, 1,  &   !
+    1, 1, 1, 1,  1, 1, 1, 1   &   !
+    ],pReal),[nNode(11),NcellNode(geomType(11))])  ! 3D 8node 8ip
+ 
+ real(pReal), dimension(nNode(12),NcellNode(geomType(12))), parameter :: cellNodeParentNodeWeights12 = &
+    reshape(real([&
+    1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !  5
+    0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   ! 10
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  1, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 1, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 1, 0, &   ! 15
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 1, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0, &   ! 20
+    1, 1, 1, 1,  0, 0, 0, 0,  2, 2, 2, 2,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    1, 1, 0, 0,  1, 1, 0, 0,  2, 0, 0, 0,  2, 0, 0, 0,  2, 2, 0, 0, &   !
+    0, 1, 1, 0,  0, 1, 1, 0,  0, 2, 0, 0,  0, 2, 0, 0,  0, 2, 2, 0, &   !
+    0, 0, 1, 1,  0, 0, 1, 1,  0, 0, 2, 0,  0, 0, 2, 0,  0, 0, 2, 2, &   !
+    1, 0, 0, 1,  1, 0, 0, 1,  0, 0, 0, 2,  0, 0, 0, 2,  2, 0, 0, 2, &   ! 25
+    0, 0, 0, 0,  1, 1, 1, 1,  0, 0, 0, 0,  2, 2, 2, 2,  0, 0, 0, 0, &   !
+    3, 3, 3, 3,  3, 3, 3, 3,  4, 4, 4, 4,  4, 4, 4, 4,  4, 4, 4, 4  &   !
+    ],pReal),[nNode(12),NcellNode(geomType(12))])  ! 3D 20node 8ip
+ 
+ real(pReal), dimension(nNode(13),NcellNode(geomType(13))), parameter :: cellNodeParentNodeWeights13 = &
+    reshape(real([&
+    1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !  5
+    0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    1, 0, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 1, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   ! 10
+    0, 1, 0, 0,  0, 0, 0, 0,  0, 2, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  0, 2, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 2, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 2, 0,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 2,  0, 0, 0, 0,  0, 0, 0, 0, &   ! 15
+    1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 2,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0, &   !
+    0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 2, 0, 0, &   !
+    0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 2, 0, &   !
+    0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 2, &   ! 20
+    0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 2, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 2, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 2, &   !
+    0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0,  0, 0, 0, 0, &   ! 25
+    0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  2, 0, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 1, 0, 0,  0, 0, 0, 0,  0, 2, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 2, 0, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 1, 0,  0, 0, 0, 0,  0, 0, 2, 0,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 2, 0,  0, 0, 0, 0, &   ! 30
+    0, 0, 0, 0,  0, 0, 0, 1,  0, 0, 0, 0,  0, 0, 0, 2,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  1, 0, 0, 0,  0, 0, 0, 0,  0, 0, 0, 2,  0, 0, 0, 0, &   !
+    4, 1, 1, 1,  0, 0, 0, 0,  8, 2, 2, 8,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    1, 4, 1, 1,  0, 0, 0, 0,  8, 8, 2, 2,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    1, 1, 4, 1,  0, 0, 0, 0,  2, 8, 8, 2,  0, 0, 0, 0,  0, 0, 0, 0, &   ! 35
+    1, 1, 1, 4,  0, 0, 0, 0,  2, 2, 8, 8,  0, 0, 0, 0,  0, 0, 0, 0, &   !
+    4, 1, 0, 0,  1, 1, 0, 0,  8, 0, 0, 0,  2, 0, 0, 0,  8, 2, 0, 0, &   !
+    1, 4, 0, 0,  1, 1, 0, 0,  8, 0, 0, 0,  2, 0, 0, 0,  2, 8, 0, 0, &   !
+    0, 4, 1, 0,  0, 1, 1, 0,  0, 8, 0, 0,  0, 2, 0, 0,  0, 8, 2, 0, &   !
+    0, 1, 4, 0,  0, 1, 1, 0,  0, 8, 0, 0,  0, 2, 0, 0,  0, 2, 8, 0, &   ! 40
+    0, 0, 4, 1,  0, 0, 1, 1,  0, 0, 8, 0,  0, 0, 2, 0,  0, 0, 8, 2, &   !
+    0, 0, 1, 4,  0, 0, 1, 1,  0, 0, 8, 0,  0, 0, 2, 0,  0, 0, 2, 8, &   !
+    1, 0, 0, 4,  1, 0, 0, 1,  0, 0, 0, 8,  0, 0, 0, 2,  2, 0, 0, 8, &   !
+    4, 0, 0, 1,  1, 0, 0, 1,  0, 0, 0, 8,  0, 0, 0, 2,  8, 0, 0, 2, &   !
+    1, 1, 0, 0,  4, 1, 0, 0,  2, 0, 0, 0,  8, 0, 0, 0,  8, 2, 0, 0, &   ! 45
+    1, 1, 0, 0,  1, 4, 0, 0,  2, 0, 0, 0,  8, 0, 0, 0,  2, 8, 0, 0, &   !
+    0, 1, 1, 0,  0, 4, 1, 0,  0, 2, 0, 0,  0, 8, 0, 0,  0, 8, 2, 0, &   !
+    0, 1, 1, 0,  0, 1, 4, 0,  0, 2, 0, 0,  0, 8, 0, 0,  0, 2, 8, 0, &   !
+    0, 0, 1, 1,  0, 0, 4, 1,  0, 0, 2, 0,  0, 0, 8, 0,  0, 0, 8, 2, &   !
+    0, 0, 1, 1,  0, 0, 1, 4,  0, 0, 2, 0,  0, 0, 8, 0,  0, 0, 2, 8, &   ! 50
+    1, 0, 0, 1,  1, 0, 0, 4,  0, 0, 0, 2,  0, 0, 0, 8,  2, 0, 0, 8, &   !
+    1, 0, 0, 1,  4, 0, 0, 1,  0, 0, 0, 2,  0, 0, 0, 8,  8, 0, 0, 2, &   !
+    0, 0, 0, 0,  4, 1, 1, 1,  0, 0, 0, 0,  8, 2, 2, 8,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  1, 4, 1, 1,  0, 0, 0, 0,  8, 8, 2, 2,  0, 0, 0, 0, &   !
+    0, 0, 0, 0,  1, 1, 4, 1,  0, 0, 0, 0,  2, 8, 8, 2,  0, 0, 0, 0, &   ! 55
+    0, 0, 0, 0,  1, 1, 1, 4,  0, 0, 0, 0,  2, 2, 8, 8,  0, 0, 0, 0, &   !
+   24, 8, 4, 8,  8, 4, 3, 4, 32,12,12,32, 12, 4, 4,12, 32,12, 4,12, &   !
+    8,24, 8, 4,  4, 8, 4, 3, 32,32,12,12, 12,12, 4, 4, 12,32,12, 4, &   !
+    4, 8,24, 8,  3, 4, 8, 4, 12,32,32,12,  4,12,12, 4,  4,12,32,12, &   !
+    8, 4, 8,24,  4, 3, 4, 8, 12,12,32,32,  4, 4,12,12, 12, 4,12,32, &   ! 60
+    8, 4, 3, 4, 24, 8, 4, 8, 12, 4, 4,12, 32,12,12,32, 32,12, 4,12, &   !
+    4, 8, 4, 3,  8,24, 8, 4, 12,12, 4, 4, 32,32,12,12, 12,32,12, 4, &   !
+    3, 4, 8, 4,  4, 8,24, 8,  4,12,12, 4, 12,32,32,12,  4,12,32,12, &   !
+    4, 3, 4, 8,  8, 4, 8,24,  4, 4,12,12, 12,12,32,32, 12, 4,12,32  &   !
+    ],pReal),[nNode(13),NcellNode(geomType(13))])  ! 3D 20node 27ip
+
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(1)),NIP(1)), parameter :: CELL1 = &
+    reshape(int([&
+    1,2,3   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(1)),NIP(1)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(2)),NIP(2)), parameter :: CELL2 = &
+    reshape(int([&
+    1, 4, 7, 6,   &
+    2, 5, 7, 4,   &
+    3, 6, 7, 5    &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(2)),NIP(2)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(3)),NIP(3)), parameter :: CELL3 = &
+    reshape(int([&
+    1, 5, 9, 8,   &
+    5, 2, 6, 9,   &
+    8, 9, 7, 4,   &
+    9, 6, 3, 7    &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(3)),NIP(3)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(4)),NIP(4)), parameter :: CELL4 = &
+    reshape(int([&
+    1, 5,13,12,   &
+    5, 6,14,13,   &
+    6, 2, 7,14,   &
+   12,13,16,11,   &
+   13,14,15,16,   &
+   14, 7, 8,15,   &
+   11,16,10, 4,   &
+   16,15, 9,10,   &
+   15, 8, 3, 9    &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(4)),NIP(4)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(5)),NIP(5)), parameter :: CELL5 = &
+    reshape(int([&
+    1, 2, 3, 4   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(5)),NIP(5)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(6)),NIP(6)), parameter :: CELL6 = &
+    reshape(int([&
+    1, 5,11, 7, 8,12,15,14,  &
+    5, 2, 6,11,12, 9,13,15,  &
+    7,11, 6, 3,14,15,13,10,  &
+    8,12,15, 4, 4, 9,13,10   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(6)),NIP(6)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(7)),NIP(7)), parameter :: CELL7 = &
+    reshape(int([&
+    1, 7,16, 9,10,17,21,19,  &
+    7, 2, 8,16,17,11,18,21,  &
+    9,16, 8, 3,19,21,18,12,  &
+   10,17,21,19, 4,13,20,15,  &
+   17,11,18,21,13, 5,14,20,  &
+   19,21,18,12,15,20,14, 6   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(7)),NIP(7)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(8)),NIP(8)), parameter :: CELL8 = &
+    reshape(int([&
+    1, 2, 3, 4, 5, 6, 7, 8   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(8)),NIP(8)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(9)),NIP(9)), parameter :: CELL9 = &
+    reshape(int([&
+    1, 9,21,12,13,22,27,25,  &
+    9, 2,10,21,22,14,23,27,  &
+   12,21,11, 4,25,27,24,16,  &
+   21,10, 3,11,27,23,15,24,  &
+   13,22,27,25, 5,17,26,20,  &
+   22,14,23,27,17, 6,18,26,  &
+   25,27,24,16,20,26,19, 8,  &
+   27,23,15,24,26,18, 7,19   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(9)),NIP(9)])
+
+ integer(pInt), dimension(NCELLNODEPERCELL(CELLTYPE(10)),NIP(10)), parameter :: CELL10 = &
+    reshape(int([&
+    1, 9,33,16,17,37,57,44,  &
+    9,10,34,33,37,38,58,57,  &
+   10, 2,11,34,38,18,39,58,  &
+   16,33,36,15,44,57,60,43,  &
+   33,34,35,36,57,58,59,60,  &
+   34,11,12,35,58,39,40,59,  &
+   15,36,14, 4,43,60,42,20,  &
+   36,35,13,14,60,59,41,42,  &
+   35,12, 3,13,59,40,19,41,  &
+   17,37,57,44,21,45,61,52,  &
+   37,38,58,57,45,46,62,61,  &
+   38,18,39,58,46,22,47,62,  &
+   44,57,60,43,52,61,64,51,  &
+   57,58,59,60,61,62,63,64,  &
+   58,39,40,59,62,47,48,63,  &
+   43,60,42,20,51,64,50,24,  &
+   60,59,41,42,64,63,49,50,  &
+   59,40,19,41,63,48,23,49,  &
+   21,45,61,52, 5,25,53,32,  &
+   45,46,62,61,25,26,54,53,  &
+   46,22,47,62,26, 6,27,54,  &
+   52,61,64,51,32,53,56,31,  &
+   61,62,63,64,53,54,55,56,  &
+   62,47,48,63,54,27,28,55,  &
+   51,64,50,24,31,56,30, 8,  &
+   64,63,49,50,56,55,29,30,  &
+   63,48,23,49,55,28, 7,29   &
+    ],pInt),[NCELLNODEPERCELL(CELLTYPE(10)),NIP(10)])
+
+
+  integer(pInt), dimension(NCELLNODEPERCELLFACE(1),NIPNEIGHBOR(1)), parameter :: CELLFACE1 = &
+    reshape(int([&
+    2,3,  &
+    3,1,  &
+    1,2   &
+    ],pInt),[NCELLNODEPERCELLFACE(1),NIPNEIGHBOR(1)])                   ! 2D 3node, VTK_TRIANGLE (5)
+
+ integer(pInt), dimension(NCELLNODEPERCELLFACE(2),NIPNEIGHBOR(2)), parameter :: CELLFACE2 = &
+    reshape(int([&
+    2,3,  &
+    4,1,  &
+    3,4,  &
+    1,2   &
+    ],pInt),[NCELLNODEPERCELLFACE(2),NIPNEIGHBOR(2)])              ! 2D 4node, VTK_QUAD (9)
+
+ integer(pInt), dimension(NCELLNODEPERCELLFACE(3),NIPNEIGHBOR(3)), parameter :: CELLFACE3 = &
+    reshape(int([&
+    1,3,2,  &
+    1,2,4,  &
+    2,3,4,  &
+    1,4,3   &
+    ],pInt),[NCELLNODEPERCELLFACE(3),NIPNEIGHBOR(3)])                     ! 3D 4node, VTK_TETRA (10)
+
+ integer(pInt), dimension(NCELLNODEPERCELLFACE(4),NIPNEIGHBOR(4)), parameter :: CELLFACE4 = &
+    reshape(int([&
+    2,3,7,6,  &
+    4,1,5,8,  &
+    3,4,8,7,  &
+    1,2,6,5,  &
+    5,6,7,8,  &
+    1,4,3,2   &
+    ],pInt),[NCELLNODEPERCELLFACE(4),NIPNEIGHBOR(4)])              ! 3D 8node, VTK_HEXAHEDRON (12)
+
+
+contains
+
+ subroutine tElement_init(self,elemType)
+   implicit none
+   class(tElement) :: self
+   integer(pInt), intent(in) :: elemType
+   self%elemType = elemType
+
+   self%Nnodes     = Nnode    (self%elemType)
+   self%geomType   = geomType (self%elemType)
+   select case (self%elemType)
+     case(1_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights1
+     case(2_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights2
+     case(3_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights3
+     case(4_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights4
+     case(5_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights5
+     case(6_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights6
+     case(7_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights7
+     case(8_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights8
+     case(9_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights9
+     case(10_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights10
+     case(11_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights11
+     case(12_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights12
+     case(13_pInt)
+       self%cellNodeParentNodeWeights  = cellNodeParentNodeWeights13
+     case default
+       print*, 'Mist'
+  end select
+  
+
+   self%NcellNodes   = NcellNode    (self%geomType)
+   self%maxNnodeAtIP = maxNnodeAtIP (self%geomType) 
+   self%nIPs         = nIP          (self%geomType)
+   self%cellType     = cellType     (self%geomType)
+
+
+   select case (self%geomType)
+     case(1_pInt)
+       self%NnodeAtIP   = NnodeAtIP1
+       self%IPneighbor  = IPneighbor1
+       self%cell        = CELL1
+     case(2_pInt)
+       self%NnodeAtIP   = NnodeAtIP2
+       self%IPneighbor  = IPneighbor2
+       self%cell        = CELL2
+     case(3_pInt)
+       self%NnodeAtIP   = NnodeAtIP3
+       self%IPneighbor  = IPneighbor3
+       self%cell        = CELL3
+     case(4_pInt)
+       self%NnodeAtIP   = NnodeAtIP4
+       self%IPneighbor  = IPneighbor4
+       self%cell        = CELL4
+     case(5_pInt)
+       self%NnodeAtIP   = NnodeAtIP5
+       self%IPneighbor  = IPneighbor5
+       self%cell        = CELL5
+     case(6_pInt)
+       self%NnodeAtIP   = NnodeAtIP6
+       self%IPneighbor  = IPneighbor6
+       self%cell        = CELL6
+     case(7_pInt)
+       self%NnodeAtIP   = NnodeAtIP7
+       self%IPneighbor  = IPneighbor7
+       self%cell        = CELL7
+     case(8_pInt)
+       self%NnodeAtIP   = NnodeAtIP8
+       self%IPneighbor  = IPneighbor8
+       self%cell        = CELL8
+     case(9_pInt)
+       self%NnodeAtIP   = NnodeAtIP9
+       self%IPneighbor  = IPneighbor9
+       self%cell        = CELL9
+     case(10_pInt)
+       self%NnodeAtIP   = NnodeAtIP10
+       self%IPneighbor  = IPneighbor10
+       self%cell        = CELL10
+  end select
+   self%NcellNodesPerCell = NCELLNODEPERCELL(self%cellType)
+ 
+  select case(self%cellType)
+    case(1_pInt)
+      self%cellFace = CELLFACE1
+    case(2_pInt)
+      self%cellFace = CELLFACE2
+    case(3_pInt)
+      self%cellFace = CELLFACE3
+    case(4_pInt)
+      self%cellFace = CELLFACE4
+   end select
+   
+   self%nIPneighbors = size(self%IPneighbor,1)
+   
+   write(6,'(/,a)')   ' <<<+-  element_init  -+>>>'
+   
+   write(6,*)' element type        ',self%elemType
+   write(6,*)'   geom type         ',self%geomType
+   write(6,*)'   cell type         ',self%cellType
+   write(6,*)'   # node            ',self%Nnodes
+   write(6,*)'   # IP              ',self%nIPs
+   write(6,*)'   # cellnode        ',self%Ncellnodes
+   write(6,*)'   # cellnode/cell   ',self%NcellnodesPerCell
+   write(6,*)'   # IP neighbor     ',self%nIPneighbors
+   write(6,*)'   max # node at IP  ',self%maxNnodeAtIP
+   
+ end subroutine tElement_init
+
+end module element

src/homogenization.f90

@@ -71,11 +71,8 @@ subroutine homogenization_init
    debug_e, &
    debug_g
  use mesh, only: &
-   mesh_maxNips, &
-   mesh_NcpElems, &
-   mesh_element, &
-   FE_Nips, &
-   FE_geomtype
+   theMesh, &
+   mesh_element
  use constitutive, only: &
    constitutive_plasticity_maxSizePostResults, &
    constitutive_source_maxSizePostResults
@@ -244,20 +241,20 @@ subroutine homogenization_init
 
 !--------------------------------------------------------------------------------------------------
 ! allocate and initialize global variables
- allocate(materialpoint_dPdF(3,3,3,3,mesh_maxNips,mesh_NcpElems),       source=0.0_pReal)
- allocate(materialpoint_F0(3,3,mesh_maxNips,mesh_NcpElems),             source=0.0_pReal)
- materialpoint_F0 = spread(spread(math_I3,3,mesh_maxNips),4,mesh_NcpElems)                          ! initialize to identity
- allocate(materialpoint_F(3,3,mesh_maxNips,mesh_NcpElems),              source=0.0_pReal)
+ allocate(materialpoint_dPdF(3,3,3,3,theMesh%elem%nIPs,theMesh%nElems),       source=0.0_pReal)
+ allocate(materialpoint_F0(3,3,theMesh%elem%nIPs,theMesh%nElems),             source=0.0_pReal)
+ materialpoint_F0 = spread(spread(math_I3,3,theMesh%elem%nIPs),4,theMesh%nElems)                          ! initialize to identity
+ allocate(materialpoint_F(3,3,theMesh%elem%nIPs,theMesh%nElems),              source=0.0_pReal)
  materialpoint_F = materialpoint_F0                                                                 ! initialize to identity
- allocate(materialpoint_subF0(3,3,mesh_maxNips,mesh_NcpElems),          source=0.0_pReal)
- allocate(materialpoint_subF(3,3,mesh_maxNips,mesh_NcpElems),           source=0.0_pReal)
- allocate(materialpoint_P(3,3,mesh_maxNips,mesh_NcpElems),              source=0.0_pReal)
- allocate(materialpoint_subFrac(mesh_maxNips,mesh_NcpElems),            source=0.0_pReal)
- allocate(materialpoint_subStep(mesh_maxNips,mesh_NcpElems),            source=0.0_pReal)
- allocate(materialpoint_subdt(mesh_maxNips,mesh_NcpElems),              source=0.0_pReal)
- allocate(materialpoint_requested(mesh_maxNips,mesh_NcpElems),          source=.false.)
- allocate(materialpoint_converged(mesh_maxNips,mesh_NcpElems),          source=.true.)
- allocate(materialpoint_doneAndHappy(2,mesh_maxNips,mesh_NcpElems),     source=.true.)
+ allocate(materialpoint_subF0(3,3,theMesh%elem%nIPs,theMesh%nElems),          source=0.0_pReal)
+ allocate(materialpoint_subF(3,3,theMesh%elem%nIPs,theMesh%nElems),           source=0.0_pReal)
+ allocate(materialpoint_P(3,3,theMesh%elem%nIPs,theMesh%nElems),              source=0.0_pReal)
+ allocate(materialpoint_subFrac(theMesh%elem%nIPs,theMesh%nElems),            source=0.0_pReal)
+ allocate(materialpoint_subStep(theMesh%elem%nIPs,theMesh%nElems),            source=0.0_pReal)
+ allocate(materialpoint_subdt(theMesh%elem%nIPs,theMesh%nElems),              source=0.0_pReal)
+ allocate(materialpoint_requested(theMesh%elem%nIPs,theMesh%nElems),          source=.false.)
+ allocate(materialpoint_converged(theMesh%elem%nIPs,theMesh%nElems),          source=.true.)
+ allocate(materialpoint_doneAndHappy(2,theMesh%elem%nIPs,theMesh%nElems),     source=.true.)
 
 !--------------------------------------------------------------------------------------------------
 ! allocate and initialize global state and postresutls variables
@@ -277,7 +274,7 @@ subroutine homogenization_init
                            + homogenization_maxNgrains * (1 + crystallite_maxSizePostResults &      ! crystallite size & crystallite results
                                                         + 1 + constitutive_plasticity_maxSizePostResults &     ! constitutive size & constitutive results
                                                             + constitutive_source_maxSizePostResults)
- allocate(materialpoint_results(materialpoint_sizeResults,mesh_maxNips,mesh_NcpElems))
+ allocate(materialpoint_results(materialpoint_sizeResults,theMesh%elem%nIPs,theMesh%nElems))
 
  write(6,'(/,a)')   ' <<<+-  homogenization init  -+>>>'
  write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
@@ -346,7 +343,6 @@ subroutine materialpoint_stressAndItsTangent(updateJaco,dt)
    crystallite_Lp, &
    crystallite_Li0, &
    crystallite_Li, &
-   crystallite_dPdF, &
    crystallite_Tstar0_v, &
    crystallite_Tstar_v, &
    crystallite_partionedF0, &
@@ -614,6 +610,7 @@ subroutine materialpoint_stressAndItsTangent(updateJaco,dt)
 ! crystallite integration
 ! based on crystallite_partionedF0,.._partionedF
 ! incrementing by crystallite_dt
+    
     materialpoint_converged = crystallite_stress() !ToDo: MD not sure if that is the best logic
 
 !--------------------------------------------------------------------------------------------------

src/kinematics_cleavage_opening.f90

@@ -11,20 +11,22 @@ module kinematics_cleavage_opening
 
  implicit none
  private
- integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   kinematics_cleavage_opening_sizePostResults, &                                                                !< cumulative size of post results
-   kinematics_cleavage_opening_offset, &                                                                         !< which kinematics is my current damage mechanism?
-   kinematics_cleavage_opening_instance                                                                          !< instance of damage kinematics mechanism
+ integer(pInt), dimension(:), allocatable, private :: kinematics_cleavage_opening_instance
 
- integer(pInt),                       dimension(:,:),         allocatable, target, public  :: &
-   kinematics_cleavage_opening_sizePostResult                                                                    !< size of each post result output
-
- character(len=64),                   dimension(:,:),         allocatable, target, public  :: &
-   kinematics_cleavage_opening_output                                                                            !< name of each post result output
-   
- integer(pInt),                       dimension(:),           allocatable, target, public  :: &
-   kinematics_cleavage_opening_Noutput                                                                           !< number of outputs per instance of this damage 
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   integer(pInt) :: &
+     totalNcleavage
+   integer(pInt), dimension(:),   allocatable :: &
+     Ncleavage                                                                                      !< active number of cleavage systems per family
+   real(pReal) :: &
+     sdot0, &
+     n
+   real(pReal),   dimension(:),   allocatable :: &
+     critDisp, &
+     critLoad
+ end type
 
+! Begin Deprecated
  integer(pInt),                       dimension(:),           allocatable,         private :: &
    kinematics_cleavage_opening_totalNcleavage                                                                    !< total number of cleavage systems
    
@@ -38,6 +40,7 @@ module kinematics_cleavage_opening
  real(pReal),                         dimension(:,:),         allocatable,         private :: &
    kinematics_cleavage_opening_critDisp, &
    kinematics_cleavage_opening_critLoad
+! End Deprecated
 
  public :: &
    kinematics_cleavage_opening_init, &
@@ -50,7 +53,7 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine kinematics_cleavage_opening_init(fileUnit)
+subroutine kinematics_cleavage_opening_init()
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
@@ -60,41 +63,25 @@ subroutine kinematics_cleavage_opening_init(fileUnit)
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
+ use config, only: &
+   config_phase
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
    IO_warning, &
    IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_timeStamp
  use material, only: &
    phase_kinematics, &
-   phase_Nkinematics, &
-   phase_Noutput, &
    KINEMATICS_cleavage_opening_label, &
    KINEMATICS_cleavage_opening_ID
- use config, only: &
-   material_Nphase, &
-   MATERIAL_partPhase
  use lattice, only: &
    lattice_maxNcleavageFamily, &
    lattice_NcleavageSystem
 
  implicit none
- integer(pInt), intent(in) :: fileUnit
+ integer(pInt), allocatable, dimension(:) :: tempInt
+ real(pReal), allocatable, dimension(:) :: tempFloat
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,phase,instance,kinematics
- integer(pInt) :: Nchunks_CleavageFamilies = 0_pInt, j   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: maxNinstance,p,instance,kinematics
 
  write(6,'(/,a)')   ' <<<+-  kinematics_'//KINEMATICS_cleavage_opening_LABEL//' init  -+>>>'
  write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
@@ -106,21 +93,11 @@ subroutine kinematics_cleavage_opening_init(fileUnit)
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
    write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
  
- allocate(kinematics_cleavage_opening_offset(material_Nphase), source=0_pInt)
- allocate(kinematics_cleavage_opening_instance(material_Nphase), source=0_pInt)
- do phase = 1, material_Nphase
-   kinematics_cleavage_opening_instance(phase) = count(phase_kinematics(:,1:phase) == kinematics_cleavage_opening_ID)
-   do kinematics = 1, phase_Nkinematics(phase)
-     if (phase_kinematics(kinematics,phase) == kinematics_cleavage_opening_ID) &
-       kinematics_cleavage_opening_offset(phase) = kinematics
-   enddo    
+ allocate(kinematics_cleavage_opening_instance(size(config_phase)), source=0_pInt)
+ do p = 1_pInt, size(config_phase)
+   kinematics_cleavage_opening_instance(p) = count(phase_kinematics(:,1:p) == kinematics_cleavage_opening_ID) ! ToDo: count correct?
  enddo
    
- allocate(kinematics_cleavage_opening_sizePostResults(maxNinstance),                      source=0_pInt)
- allocate(kinematics_cleavage_opening_sizePostResult(maxval(phase_Noutput),maxNinstance), source=0_pInt)
- allocate(kinematics_cleavage_opening_output(maxval(phase_Noutput),maxNinstance))
-          kinematics_cleavage_opening_output = ''
- allocate(kinematics_cleavage_opening_Noutput(maxNinstance),                              source=0_pInt) 
  allocate(kinematics_cleavage_opening_critDisp(lattice_maxNcleavageFamily,maxNinstance),  source=0.0_pReal) 
  allocate(kinematics_cleavage_opening_critLoad(lattice_maxNcleavageFamily,maxNinstance),  source=0.0_pReal) 
  allocate(kinematics_cleavage_opening_Ncleavage(lattice_maxNcleavageFamily,maxNinstance), source=0_pInt)
@@ -128,90 +105,51 @@ subroutine kinematics_cleavage_opening_init(fileUnit)
  allocate(kinematics_cleavage_opening_sdot_0(maxNinstance),                               source=0.0_pReal) 
  allocate(kinematics_cleavage_opening_N(maxNinstance),                                    source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ do p = 1_pInt, size(config_phase)
+   if (all(phase_kinematics(:,p) /= KINEMATICS_cleavage_opening_ID)) cycle
+   instance = kinematics_cleavage_opening_instance(p)
+   kinematics_cleavage_opening_sdot_0(instance) = config_phase(p)%getFloat('anisobrittle_sdot0')
+   kinematics_cleavage_opening_N(instance)      = config_phase(p)%getFloat('anisobrittle_ratesensitivity')
+   tempInt = config_phase(p)%getInts('ncleavage')     
+   kinematics_cleavage_opening_Ncleavage(1:size(tempInt),instance) = tempInt
 
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_kinematics(:,phase) == KINEMATICS_cleavage_opening_ID)) then         ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = kinematics_cleavage_opening_instance(phase)                                                         ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                             ! extract key
-     select case(tag)
-       case ('anisobrittle_sdot0')
-         kinematics_cleavage_opening_sdot_0(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   tempFloat = config_phase(p)%getFloats('anisobrittle_criticaldisplacement',requiredSize=size(tempInt))
+   kinematics_cleavage_opening_critDisp(1:size(tempInt),instance) = tempFloat
 
-       case ('anisobrittle_ratesensitivity')
-         kinematics_cleavage_opening_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   tempFloat = config_phase(p)%getFloats('anisobrittle_criticalload',requiredSize=size(tempInt))
+   kinematics_cleavage_opening_critLoad(1:size(tempInt),instance) = tempFloat
 
-       case ('ncleavage')  !
-         Nchunks_CleavageFamilies = chunkPos(1) - 1_pInt
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           kinematics_cleavage_opening_Ncleavage(j,instance) = IO_intValue(line,chunkPos,1_pInt+j)
-         enddo
-
-       case ('anisobrittle_criticaldisplacement')
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           kinematics_cleavage_opening_critDisp(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
-
-       case ('anisobrittle_criticalload')
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           kinematics_cleavage_opening_critLoad(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
-
-     end select
-   endif; endif
- enddo parsingFile
-
-!--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, material_Nphase   
-   myPhase: if (any(phase_kinematics(:,phase) == KINEMATICS_cleavage_opening_ID)) then
-     instance = kinematics_cleavage_opening_instance(phase)
    kinematics_cleavage_opening_Ncleavage(1:lattice_maxNcleavageFamily,instance) = &
-       min(lattice_NcleavageSystem(1:lattice_maxNcleavageFamily,phase),&                            ! limit active cleavage systems per family to min of available and requested
+       min(lattice_NcleavageSystem(1:lattice_maxNcleavageFamily,p),&                            ! limit active cleavage systems per family to min of available and requested
            kinematics_cleavage_opening_Ncleavage(1:lattice_maxNcleavageFamily,instance))
      kinematics_cleavage_opening_totalNcleavage(instance)  = sum(kinematics_cleavage_opening_Ncleavage(:,instance)) ! how many cleavage systems altogether
      if (kinematics_cleavage_opening_sdot_0(instance) <= 0.0_pReal) &
        call IO_error(211_pInt,el=instance,ext_msg='sdot_0 ('//KINEMATICS_cleavage_opening_LABEL//')')
-     if (any(kinematics_cleavage_opening_critDisp(1:Nchunks_CleavageFamilies,instance) < 0.0_pReal)) &
+     if (any(kinematics_cleavage_opening_critDisp(1:size(tempInt),instance) < 0.0_pReal)) &
        call IO_error(211_pInt,el=instance,ext_msg='critical_displacement ('//KINEMATICS_cleavage_opening_LABEL//')')
-     if (any(kinematics_cleavage_opening_critLoad(1:Nchunks_CleavageFamilies,instance) < 0.0_pReal)) &
+     if (any(kinematics_cleavage_opening_critLoad(1:size(tempInt),instance) < 0.0_pReal)) &
        call IO_error(211_pInt,el=instance,ext_msg='critical_load ('//KINEMATICS_cleavage_opening_LABEL//')')
      if (kinematics_cleavage_opening_N(instance) <= 0.0_pReal) &
        call IO_error(211_pInt,el=instance,ext_msg='rate_sensitivity ('//KINEMATICS_cleavage_opening_LABEL//')')
-   endif myPhase
- enddo sanityChecks
+ enddo
  
 end subroutine kinematics_cleavage_opening_init
 
 !--------------------------------------------------------------------------------------------------
 !> @brief  contains the constitutive equation for calculating the velocity gradient  
 !--------------------------------------------------------------------------------------------------
-subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar_v, ipc, ip, el)
+subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar, S, ipc, ip, el)
  use prec, only: &
    tol_math_check
+ use math, only: &
+   math_mul33xx33
  use material, only: &
-   phaseAt, phasememberAt, &
+   material_phase, &
    material_homog, &
    damage, &
    damageMapping
  use lattice, only: &
    lattice_Scleavage, &
-   lattice_Scleavage_v, &
    lattice_maxNcleavageFamily, &
    lattice_NcleavageSystem
  
@@ -220,36 +158,33 @@ subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar
    ipc, &                                                                                           !< grain number
    ip, &                                                                                            !< integration point number
    el                                                                                               !< element number
- real(pReal),   intent(in),  dimension(6) :: &
-   Tstar_v                                                                                          !< 2nd Piola-Kirchhoff stress
+ real(pReal),   intent(in),  dimension(3,3) :: &
+   S
  real(pReal),   intent(out), dimension(3,3) :: &
    Ld                                                                                               !< damage velocity gradient
  real(pReal),   intent(out), dimension(3,3,3,3) :: &
-   dLd_dTstar3333                                                                                   !< derivative of Ld with respect to Tstar (4th-order tensor)
+   dLd_dTstar                                                                                       !< derivative of Ld with respect to Tstar (4th-order tensor)
  integer(pInt) :: &
-   phase, &
-   constituent, &
-   instance, &
+   instance, phase, &
    homog, damageOffset, &
    f, i, index_myFamily, k, l, m, n
  real(pReal) :: &
    traction_d, traction_t, traction_n, traction_crit, &
    udotd, dudotd_dt, udott, dudott_dt, udotn, dudotn_dt
 
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
+ phase = material_phase(ipc,ip,el)
  instance = kinematics_cleavage_opening_instance(phase)
  homog = material_homog(ip,el)
  damageOffset = damageMapping(homog)%p(ip,el)
  
  Ld = 0.0_pReal
- dLd_dTstar3333 = 0.0_pReal
+ dLd_dTstar = 0.0_pReal
  do f = 1_pInt,lattice_maxNcleavageFamily
    index_myFamily = sum(lattice_NcleavageSystem(1:f-1_pInt,phase))                                   ! at which index starts my family
    do i = 1_pInt,kinematics_cleavage_opening_Ncleavage(f,instance)                                            ! process each (active) cleavage system in family
-     traction_d    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,1,index_myFamily+i,phase))
-     traction_t    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,2,index_myFamily+i,phase))
-     traction_n    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,3,index_myFamily+i,phase))
+     traction_d    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,1,index_myFamily+i,phase))
+     traction_t    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,2,index_myFamily+i,phase))
+     traction_n    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,3,index_myFamily+i,phase))
      traction_crit = kinematics_cleavage_opening_critLoad(f,instance)* &
                      damage(homog)%p(damageOffset)*damage(homog)%p(damageOffset)
      udotd = &
@@ -261,7 +196,7 @@ subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar
        dudotd_dt = sign(1.0_pReal,traction_d)*udotd*kinematics_cleavage_opening_N(instance)/ &
                    max(0.0_pReal, abs(traction_d) - traction_crit)
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudotd_dt*lattice_Scleavage(k,l,1,index_myFamily+i,phase)* &
                      lattice_Scleavage(m,n,1,index_myFamily+i,phase)
      endif                
@@ -275,7 +210,7 @@ subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar
        dudott_dt = sign(1.0_pReal,traction_t)*udott*kinematics_cleavage_opening_N(instance)/ &
                    max(0.0_pReal, abs(traction_t) - traction_crit)  
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudott_dt*lattice_Scleavage(k,l,2,index_myFamily+i,phase)* &
                      lattice_Scleavage(m,n,2,index_myFamily+i,phase)
      endif                
@@ -289,11 +224,10 @@ subroutine kinematics_cleavage_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar
        dudotn_dt = sign(1.0_pReal,traction_n)*udotn*kinematics_cleavage_opening_N(instance)/ &
                    max(0.0_pReal, abs(traction_n) - traction_crit)
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudotn_dt*lattice_Scleavage(k,l,3,index_myFamily+i,phase)* &
                      lattice_Scleavage(m,n,3,index_myFamily+i,phase)
      endif                
-
    enddo
  enddo
  

src/kinematics_slipplane_opening.f90

@@ -11,20 +11,22 @@ module kinematics_slipplane_opening
 
  implicit none
  private
- integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   kinematics_slipplane_opening_sizePostResults, &                                                            !< cumulative size of post results
-   kinematics_slipplane_opening_offset, &                                                                     !< which kinematics is my current damage mechanism?
-   kinematics_slipplane_opening_instance                                                                      !< instance of damage kinematics mechanism
+ integer(pInt), dimension(:), allocatable, private :: kinematics_slipplane_opening_instance
    
- integer(pInt),                       dimension(:,:),         allocatable, target, public  :: &
-   kinematics_slipplane_opening_sizePostResult                                                                !< size of each post result output
-
- character(len=64),                   dimension(:,:),         allocatable, target, public  :: &
-   kinematics_slipplane_opening_output                                                                        !< name of each post result output
-   
- integer(pInt),                       dimension(:),           allocatable, target, public  :: &
-   kinematics_slipplane_opening_Noutput                                                                       !< number of outputs per instance of this damage 
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   integer(pInt) :: &
+     totalNslip
+   integer(pInt), dimension(:),   allocatable :: &
+     Nslip                                                                                          !< active number of slip systems per family
+   real(pReal) :: &
+     sdot0, &
+     n
+   real(pReal),   dimension(:),   allocatable :: &
+     critDisp, &
+     critPlasticStrain
+ end type
 
+! Begin Deprecated
  integer(pInt),                       dimension(:),           allocatable,         private :: &
    kinematics_slipplane_opening_totalNslip                                                                    !< total number of slip systems
 
@@ -38,6 +40,7 @@ module kinematics_slipplane_opening
  real(pReal),                         dimension(:,:),         allocatable,         private :: &
    kinematics_slipplane_opening_critPlasticStrain, &
    kinematics_slipplane_opening_critLoad
+! End Deprecated
    
  public :: &
    kinematics_slipplane_opening_init, &
@@ -50,7 +53,7 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine kinematics_slipplane_opening_init(fileUnit)
+subroutine kinematics_slipplane_opening_init()
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
@@ -60,41 +63,25 @@ subroutine kinematics_slipplane_opening_init(fileUnit)
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
+ use config, only: &
+   config_phase
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
    IO_warning, &
    IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_timeStamp
  use material, only: &
    phase_kinematics, &
-   phase_Nkinematics, &
-   phase_Noutput, &
    KINEMATICS_slipplane_opening_label, &
    KINEMATICS_slipplane_opening_ID
- use config, only: &
-   material_Nphase, &
-   MATERIAL_partPhase
  use lattice, only: &
    lattice_maxNslipFamily, &
    lattice_NslipSystem
 
  implicit none
- integer(pInt), intent(in) :: fileUnit
+ integer(pInt), allocatable, dimension(:) :: tempInt
+ real(pReal), allocatable, dimension(:) :: tempFloat
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,phase,instance,kinematics
- integer(pInt) :: Nchunks_SlipFamilies = 0_pInt, j   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: maxNinstance,p,instance,kinematics
 
  write(6,'(/,a)')   ' <<<+-  kinematics_'//KINEMATICS_slipplane_opening_LABEL//' init  -+>>>'
  write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
@@ -106,21 +93,11 @@ subroutine kinematics_slipplane_opening_init(fileUnit)
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
    write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
  
- allocate(kinematics_slipplane_opening_offset(material_Nphase), source=0_pInt)
- allocate(kinematics_slipplane_opening_instance(material_Nphase), source=0_pInt)
- do phase = 1, material_Nphase
-   kinematics_slipplane_opening_instance(phase) = count(phase_kinematics(:,1:phase) == kinematics_slipplane_opening_ID)
-   do kinematics = 1, phase_Nkinematics(phase)
-     if (phase_kinematics(kinematics,phase) == kinematics_slipplane_opening_ID) &
-       kinematics_slipplane_opening_offset(phase) = kinematics
-   enddo    
+ allocate(kinematics_slipplane_opening_instance(size(config_phase)), source=0_pInt)
+ do p = 1_pInt, size(config_phase)
+   kinematics_slipplane_opening_instance(p) = count(phase_kinematics(:,1:p) == kinematics_slipplane_opening_ID) ! ToDo: count correct?
  enddo
    
- allocate(kinematics_slipplane_opening_sizePostResults(maxNinstance),                     source=0_pInt)
- allocate(kinematics_slipplane_opening_sizePostResult(maxval(phase_Noutput),maxNinstance),source=0_pInt)
- allocate(kinematics_slipplane_opening_output(maxval(phase_Noutput),maxNinstance))
-          kinematics_slipplane_opening_output = ''
- allocate(kinematics_slipplane_opening_Noutput(maxNinstance),                             source=0_pInt) 
  allocate(kinematics_slipplane_opening_critLoad(lattice_maxNslipFamily,maxNinstance),     source=0.0_pReal) 
  allocate(kinematics_slipplane_opening_critPlasticStrain(lattice_maxNslipFamily,maxNinstance),source=0.0_pReal) 
  allocate(kinematics_slipplane_opening_Nslip(lattice_maxNslipFamily,maxNinstance),        source=0_pInt)
@@ -128,61 +105,22 @@ subroutine kinematics_slipplane_opening_init(fileUnit)
  allocate(kinematics_slipplane_opening_N(maxNinstance),                                   source=0.0_pReal) 
  allocate(kinematics_slipplane_opening_sdot_0(maxNinstance),                              source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ do p = 1_pInt, size(config_phase)
+   if (all(phase_kinematics(:,p) /= KINEMATICS_slipplane_opening_ID)) cycle
+   instance = kinematics_slipplane_opening_instance(p)
+   kinematics_slipplane_opening_sdot_0(instance) = config_phase(p)%getFloat('anisoductile_sdot0')
+   kinematics_slipplane_opening_N(instance)      = config_phase(p)%getFloat('anisoductile_ratesensitivity')
+   tempInt = config_phase(p)%getInts('ncleavage')     
+   kinematics_slipplane_opening_Nslip(1:size(tempInt),instance) = tempInt
 
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_kinematics(:,phase) == KINEMATICS_slipplane_opening_ID)) then ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = kinematics_slipplane_opening_instance(phase)                                        ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                              ! extract key
-     select case(tag)
-       case ('nslip')  !
-         Nchunks_SlipFamilies = chunkPos(1) - 1_pInt
-         do j = 1_pInt, Nchunks_SlipFamilies
-           kinematics_slipplane_opening_Nslip(j,instance) = IO_intValue(line,chunkPos,1_pInt+j)
-         enddo
+   tempFloat = config_phase(p)%getFloats('anisoductile_criticalplasticstrain',requiredSize=size(tempInt))
+   kinematics_slipplane_opening_critPlasticStrain(1:size(tempInt),instance) = tempFloat
 
-       case ('anisoductile_sdot0')
-         kinematics_slipplane_opening_sdot_0(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   tempFloat = config_phase(p)%getFloats('anisoductile_criticalload',requiredSize=size(tempInt))
+   kinematics_slipplane_opening_critLoad(1:size(tempInt),instance) = tempFloat
 
-       case ('anisoductile_criticalplasticstrain')
-         do j = 1_pInt, Nchunks_SlipFamilies
-           kinematics_slipplane_opening_critPlasticStrain(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
-         
-       case ('anisoductile_ratesensitivity')
-         kinematics_slipplane_opening_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
-
-       case ('anisoductile_criticalload')
-         do j = 1_pInt, Nchunks_SlipFamilies
-           kinematics_slipplane_opening_critLoad(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
-         
-     end select
-   endif; endif
- enddo parsingFile
-
-!--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, material_Nphase   
-   myPhase: if (any(phase_kinematics(:,phase) == KINEMATICS_slipplane_opening_ID)) then
-     instance = kinematics_slipplane_opening_instance(phase)
      kinematics_slipplane_opening_Nslip(1:lattice_maxNslipFamily,instance) = &
-       min(lattice_NslipSystem(1:lattice_maxNslipFamily,phase),&                                    ! limit active cleavage systems per family to min of available and requested
+       min(lattice_NslipSystem(1:lattice_maxNslipFamily,p),&                                    ! limit active cleavage systems per family to min of available and requested
            kinematics_slipplane_opening_Nslip(1:lattice_maxNslipFamily,instance))
          kinematics_slipplane_opening_totalNslip(instance) = sum(kinematics_slipplane_opening_Nslip(:,instance))
      if (kinematics_slipplane_opening_sdot_0(instance) <= 0.0_pReal) &
@@ -191,18 +129,18 @@ subroutine kinematics_slipplane_opening_init(fileUnit)
        call IO_error(211_pInt,el=instance,ext_msg='criticaPlasticStrain ('//KINEMATICS_slipplane_opening_LABEL//')')
      if (kinematics_slipplane_opening_N(instance) <= 0.0_pReal) &
        call IO_error(211_pInt,el=instance,ext_msg='rate_sensitivity ('//KINEMATICS_slipplane_opening_LABEL//')')
-   endif myPhase
- enddo sanityChecks
-  
+ enddo
   
 end subroutine kinematics_slipplane_opening_init
 
 !--------------------------------------------------------------------------------------------------
 !> @brief  contains the constitutive equation for calculating the velocity gradient  
 !--------------------------------------------------------------------------------------------------
-subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tstar_v, ipc, ip, el)
+subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar, S, ipc, ip, el)
  use prec, only: &
    tol_math_check
+ use math, only: &
+   math_mul33xx33
  use lattice, only: &
    lattice_maxNslipFamily, &
    lattice_NslipSystem, &
@@ -210,53 +148,41 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tsta
    lattice_st, &
    lattice_sn
  use material, only: &
-   phaseAt, phasememberAt, &
+   material_phase, &
    material_homog, &
    damage, &
    damageMapping
  use math, only: &
-   math_Plain3333to99, &
-   math_I3, &
-   math_identity4th, &
-   math_symmetric33, &
-   math_Mandel33to6, &
-   math_tensorproduct33, &
-   math_det33, &
-   math_mul33x33
+   math_tensorproduct33
  
  implicit none
  integer(pInt), intent(in) :: &
    ipc, &                                                                                           !< grain number
    ip, &                                                                                            !< integration point number
    el                                                                                               !< element number
- real(pReal),   intent(in),  dimension(6) :: &
-   Tstar_v                                                                                          !< 2nd Piola-Kirchhoff stress
+ real(pReal),   intent(in),  dimension(3,3) :: &
+   S
  real(pReal),   intent(out), dimension(3,3) :: &
    Ld                                                                                               !< damage velocity gradient
  real(pReal),   intent(out), dimension(3,3,3,3) :: &
-   dLd_dTstar3333                                                                                   !< derivative of Ld with respect to Tstar (4th-order tensor)
+   dLd_dTstar                                                                                       !< derivative of Ld with respect to Tstar (4th-order tensor)
  real(pReal),   dimension(3,3) :: &
    projection_d, projection_t, projection_n                                                         !< projection modes 3x3 tensor
- real(pReal),   dimension(6) :: &
-   projection_d_v, projection_t_v, projection_n_v                                                   !< projection modes 3x3 vector
  integer(pInt) :: &
-   phase, &
-   constituent, &
-   instance, &
+   instance, phase, &
    homog, damageOffset, &
    f, i, index_myFamily, k, l, m, n
  real(pReal) :: &
    traction_d, traction_t, traction_n, traction_crit, &
    udotd, dudotd_dt, udott, dudott_dt, udotn, dudotn_dt
    
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
+ phase = material_phase(ipc,ip,el)
  instance = kinematics_slipplane_opening_instance(phase)
  homog = material_homog(ip,el)
  damageOffset = damageMapping(homog)%p(ip,el)
  
  Ld = 0.0_pReal
- dLd_dTstar3333 = 0.0_pReal
+ dLd_dTstar = 0.0_pReal
  do f = 1_pInt,lattice_maxNslipFamily
    index_myFamily = sum(lattice_NslipSystem(1:f-1_pInt,phase))                                      ! at which index starts my family
    do i = 1_pInt,kinematics_slipplane_opening_Nslip(f,instance)                                              ! process each (active) slip system in family
@@ -267,13 +193,10 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tsta
      projection_n = math_tensorproduct33(lattice_sn(1:3,index_myFamily+i,phase),&
                                        lattice_sn(1:3,index_myFamily+i,phase))
 
-     projection_d_v(1:6) = math_Mandel33to6(math_symmetric33(projection_d(1:3,1:3)))
-     projection_t_v(1:6) = math_Mandel33to6(math_symmetric33(projection_t(1:3,1:3)))
-     projection_n_v(1:6) = math_Mandel33to6(math_symmetric33(projection_n(1:3,1:3)))
    
-     traction_d    = dot_product(Tstar_v,projection_d_v(1:6))
-     traction_t    = dot_product(Tstar_v,projection_t_v(1:6))
-     traction_n    = dot_product(Tstar_v,projection_n_v(1:6))
+     traction_d    = math_mul33xx33(S,projection_d)
+     traction_t    = math_mul33xx33(S,projection_t)
+     traction_n    = math_mul33xx33(S,projection_n)
      
      traction_crit = kinematics_slipplane_opening_critLoad(f,instance)* &
                      damage(homog)%p(damageOffset)                                                        ! degrading critical load carrying capacity by damage 
@@ -287,7 +210,7 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tsta
        Ld = Ld + udotd*projection_d
        dudotd_dt = udotd*kinematics_slipplane_opening_N(instance)/traction_d
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudotd_dt*projection_d(k,l)*projection_d(m,n)
      endif                
  
@@ -300,9 +223,10 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tsta
        Ld = Ld + udott*projection_t
        dudott_dt = udott*kinematics_slipplane_opening_N(instance)/traction_t
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudott_dt*projection_t(k,l)*projection_t(m,n)
      endif
+
      udotn = &
        kinematics_slipplane_opening_sdot_0(instance)* &
        (max(0.0_pReal,traction_n)/traction_crit - &
@@ -311,7 +235,7 @@ subroutine kinematics_slipplane_opening_LiAndItsTangent(Ld, dLd_dTstar3333, Tsta
        Ld = Ld + udotn*projection_n
        dudotn_dt = udotn*kinematics_slipplane_opening_N(instance)/traction_n
        forall (k=1_pInt:3_pInt,l=1_pInt:3_pInt,m=1_pInt:3_pInt,n=1_pInt:3_pInt) &
-         dLd_dTstar3333(k,l,m,n) = dLd_dTstar3333(k,l,m,n) + &
+         dLd_dTstar(k,l,m,n) = dLd_dTstar(k,l,m,n) + &
            dudotn_dt*projection_n(k,l)*projection_n(m,n)
      endif 
    enddo

src/kinematics_thermal_expansion.f90

@@ -24,10 +24,10 @@ module kinematics_thermal_expansion
  integer(pInt),                       dimension(:),           allocatable, target, public  :: &
    kinematics_thermal_expansion_Noutput                                                                           !< number of outputs per instance of this damage 
 
-! enum, bind(c)                                                                                                   ! ToDo kinematics need state machinery to deal with sizePostResult
-!   enumerator :: undefined_ID, &                                                                                 ! possible remedy is to decouple having state vars from having output
-!                 thermalexpansionrate_ID                                                                         ! which means to separate user-defined types tState + tOutput...
-! end enum
+ enum, bind(c)                                                                                                   ! ToDo kinematics need state machinery to deal with sizePostResult
+   enumerator :: undefined_ID, &                                                                                 ! possible remedy is to decouple having state vars from having output
+                 thermalexpansionrate_ID                                                                         ! which means to separate user-defined types tState + tOutput...
+ end enum
  public :: &
    kinematics_thermal_expansion_init, &
    kinematics_thermal_expansion_initialStrain, &

src/lattice.f90

@@ -31,8 +31,7 @@ module lattice
    lattice_Scleavage                                                                                !< Schmid matrices for cleavage systems
 
  real(pReal), allocatable, dimension(:,:,:,:), protected, public :: &
-   lattice_Sslip_v, &                                                                               !< Mandel notation of lattice_Sslip
-   lattice_Scleavage_v                                                                              !< Mandel notation of lattice_Scleavege
+   lattice_Sslip_v                                                                              !< Mandel notation of lattice_Sslip
 
  real(pReal), allocatable, dimension(:,:,:), protected, public :: &
    lattice_sn, &                                                                                    !< normal direction of slip system
@@ -776,7 +775,6 @@ subroutine lattice_init
  allocate(lattice_interactionSlipSlip(lattice_maxNslip,lattice_maxNslip,Nphases),source=0_pInt)     ! other:me
 
  allocate(lattice_Scleavage(3,3,3,lattice_maxNslip,Nphases),source=0.0_pReal)
- allocate(lattice_Scleavage_v(6,3,lattice_maxNslip,Nphases),source=0.0_pReal)
  allocate(lattice_NcleavageSystem(lattice_maxNcleavageFamily,Nphases),source=0_pInt)
 
  allocate(CoverA(Nphases),source=0.0_pReal)
@@ -1060,13 +1058,6 @@ subroutine lattice_initializeStructure(myPhase,CoverA)
    enddo
  enddo
 
- do i = 1_pInt,myNcleavage                                                                          ! store slip system vectors and Schmid matrix for my structure
-   do j = 1_pInt,3_pInt
-     lattice_Scleavage_v(1:6,j,i,myPhase) = &
-       math_sym33to6(math_symmetric33(lattice_Scleavage(1:3,1:3,j,i,myPhase)))
-   enddo
- enddo
-
 end subroutine lattice_initializeStructure
 
 

src/material.f90

@@ -235,6 +235,7 @@ module material
  public :: &
    material_init, &
    material_allocatePlasticState, &
+   material_allocateSourceState, &
    ELASTICITY_hooke_ID ,&
    PLASTICITY_none_ID, &
    PLASTICITY_isotropic_ID, &
@@ -305,9 +306,7 @@ subroutine material_init()
    texture_name
  use mesh, only: &
    mesh_homogenizationAt, &
-   mesh_NipsPerElem, &
-   mesh_NcpElems, &
-   FE_geomtype
+   theMesh
 
  implicit none
  integer(pInt), parameter :: FILEUNIT = 210_pInt
@@ -399,10 +398,10 @@ subroutine material_init()
  call material_populateGrains
 
 ! BEGIN DEPRECATED
- allocate(phaseAt                   (  homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),source=0_pInt)
- allocate(phasememberAt             (  homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),source=0_pInt)
- allocate(mappingHomogenization     (2,                          mesh_nIPsPerElem,mesh_NcpElems),source=0_pInt)
- allocate(mappingHomogenizationConst(                            mesh_nIPsPerElem,mesh_NcpElems),source=1_pInt)
+ allocate(phaseAt                   (  homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),source=0_pInt)
+ allocate(phasememberAt             (  homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),source=0_pInt)
+ allocate(mappingHomogenization     (2,                          theMesh%elem%nIPs,theMesh%Nelems),source=0_pInt)
+ allocate(mappingHomogenizationConst(                            theMesh%elem%nIPs,theMesh%Nelems),source=1_pInt)
 ! END DEPRECATED
 
  allocate(material_homogenizationAt,source=mesh_homogenizationAt)
@@ -410,9 +409,9 @@ subroutine material_init()
  allocate(CounterHomogenization(size(config_homogenization)),source=0_pInt)
 
 ! BEGIN DEPRECATED
- do e = 1_pInt,mesh_NcpElems
+ do e = 1_pInt,theMesh%Nelems
  myHomog = mesh_homogenizationAt(e)
-   do i = 1_pInt, mesh_NipsPerElem
+   do i = 1_pInt, theMesh%elem%nIPs
      CounterHomogenization(myHomog) = CounterHomogenization(myHomog) + 1_pInt
      mappingHomogenization(1:2,i,e) = [CounterHomogenization(myHomog),myHomog]
      do g = 1_pInt,homogenization_Ngrains(myHomog)
@@ -553,7 +552,7 @@ subroutine material_parseMicrostructure
    microstructure_name
  use mesh, only: &
    mesh_microstructureAt, &
-   mesh_NcpElems
+   theMesh
 
  implicit none
  character(len=65536), dimension(:), allocatable :: &
@@ -571,7 +570,7 @@ subroutine material_parseMicrostructure
  if(any(mesh_microstructureAt > size(config_microstructure))) &
   call IO_error(155_pInt,ext_msg='More microstructures in geometry than sections in material.config')
 
- forall (e = 1_pInt:mesh_NcpElems) &
+ forall (e = 1_pInt:theMesh%Nelems) &
    microstructure_active(mesh_microstructureAt(e)) = .true.                                         ! current microstructure used in model? Elementwise view, maximum N operations for N elements
 
  do m=1_pInt, size(config_microstructure)
@@ -966,6 +965,49 @@ subroutine material_allocatePlasticState(phase,NofMyPhase,&
 end subroutine material_allocatePlasticState
 
 
+!--------------------------------------------------------------------------------------------------
+!> @brief allocates the source state of a phase
+!--------------------------------------------------------------------------------------------------
+subroutine material_allocateSourceState(phase,of,NofMyPhase,&
+                                        sizeState,sizeDotState,sizeDeltaState)
+ use numerics, only: &
+   numerics_integrator2 => numerics_integrator                                                      ! compatibility hack
+
+ implicit none
+ integer(pInt), intent(in) :: &
+   phase, &
+   of, &
+   NofMyPhase, &
+   sizeState, sizeDotState,sizeDeltaState
+ integer(pInt) :: numerics_integrator                                                               ! compatibility hack
+ numerics_integrator = numerics_integrator2(1)                                                      ! compatibility hack
+
+ sourceState(phase)%p(of)%sizeState        = sizeState
+ sourceState(phase)%p(of)%sizeDotState     = sizeDotState
+ sourceState(phase)%p(of)%sizeDeltaState   = sizeDeltaState
+ plasticState(phase)%offsetDeltaState = sizeState-sizeDeltaState                                    ! deltaState occupies latter part of state by definition
+
+ allocate(sourceState(phase)%p(of)%aTolState           (sizeState),                source=0.0_pReal)
+ allocate(sourceState(phase)%p(of)%state0              (sizeState,NofMyPhase),     source=0.0_pReal)
+ allocate(sourceState(phase)%p(of)%partionedState0     (sizeState,NofMyPhase),     source=0.0_pReal)
+ allocate(sourceState(phase)%p(of)%subState0           (sizeState,NofMyPhase),     source=0.0_pReal)
+ allocate(sourceState(phase)%p(of)%state               (sizeState,NofMyPhase),     source=0.0_pReal)
+
+ allocate(sourceState(phase)%p(of)%dotState            (sizeDotState,NofMyPhase),  source=0.0_pReal)
+ if (numerics_integrator == 1_pInt) then
+   allocate(sourceState(phase)%p(of)%previousDotState  (sizeDotState,NofMyPhase),  source=0.0_pReal)
+   allocate(sourceState(phase)%p(of)%previousDotState2 (sizeDotState,NofMyPhase),  source=0.0_pReal)
+ endif
+ if (numerics_integrator == 4_pInt) &
+   allocate(sourceState(phase)%p(of)%RK4dotState       (sizeDotState,NofMyPhase),  source=0.0_pReal)
+ if (numerics_integrator == 5_pInt) &
+   allocate(sourceState(phase)%p(of)%RKCK45dotState  (6,sizeDotState,NofMyPhase),  source=0.0_pReal)
+
+ allocate(plasticState(phase)%deltaState        (sizeDeltaState,NofMyPhase),  source=0.0_pReal)
+
+end subroutine material_allocateSourceState
+
+
 !--------------------------------------------------------------------------------------------------
 !> @brief populates the grains
 !> @details populates the grains by identifying active microstructure/homogenization pairs,
@@ -984,13 +1026,10 @@ subroutine material_populateGrains
    math_sampleFiberOri, &
    math_symmetricEulers
  use mesh, only: &
-   mesh_NipsPerElem, &
-   mesh_elemType, &
    mesh_homogenizationAt, &
    mesh_microstructureAt, &
-   mesh_NcpElems, &
-   mesh_ipVolume, &
-   FE_geomtype
+   theMesh, &
+   mesh_ipVolume
  use config, only: &
    config_homogenization, &
    config_microstructure, &
@@ -1026,24 +1065,24 @@ subroutine material_populateGrains
 
  myDebug = debug_level(debug_material)
 
- allocate(material_volume(homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),       source=0.0_pReal)
- allocate(material_phase(homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),        source=0_pInt)
- allocate(material_homog(mesh_nIPsPerElem,mesh_NcpElems),                                  source=0_pInt)
- allocate(material_texture(homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),      source=0_pInt)
- allocate(material_EulerAngles(3,homogenization_maxNgrains,mesh_nIPsPerElem,mesh_NcpElems),source=0.0_pReal)
+ allocate(material_volume(homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),       source=0.0_pReal)
+ allocate(material_phase(homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),        source=0_pInt)
+ allocate(material_homog(theMesh%elem%nIPs,theMesh%Nelems),                                  source=0_pInt)
+ allocate(material_texture(homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),      source=0_pInt)
+ allocate(material_EulerAngles(3,homogenization_maxNgrains,theMesh%elem%nIPs,theMesh%Nelems),source=0.0_pReal)
 
  allocate(Ngrains(size(config_homogenization),size(config_microstructure)),            source=0_pInt)
  allocate(Nelems (size(config_homogenization),size(config_microstructure)),            source=0_pInt)
 
 ! populating homogenization schemes in each
 !--------------------------------------------------------------------------------------------------
- do e = 1_pInt, mesh_NcpElems
-   material_homog(1_pInt:mesh_NipsPerElem,e) = mesh_homogenizationAt(e)
+ do e = 1_pInt, theMesh%Nelems
+   material_homog(1_pInt:theMesh%elem%nIPs,e) = mesh_homogenizationAt(e)
  enddo
 
 !--------------------------------------------------------------------------------------------------
 ! precounting of elements for each homog/micro pair
- do e = 1_pInt, mesh_NcpElems
+ do e = 1_pInt, theMesh%Nelems
    homog = mesh_homogenizationAt(e)
    micro = mesh_microstructureAt(e)
    Nelems(homog,micro) = Nelems(homog,micro) + 1_pInt
@@ -1061,8 +1100,7 @@ subroutine material_populateGrains
 !--------------------------------------------------------------------------------------------------
 ! identify maximum grain count per IP (from element) and find grains per homog/micro pair
  Nelems = 0_pInt                                                                                    ! reuse as counter
- elementLooping: do e = 1_pInt,mesh_NcpElems
-   t     = mesh_elemType
+ elementLooping: do e = 1_pInt,theMesh%Nelems
    homog = mesh_homogenizationAt(e)
    micro = mesh_microstructureAt(e)
    if (homog < 1_pInt .or. homog > size(config_homogenization)) &                                      ! out of bounds
@@ -1072,7 +1110,7 @@ subroutine material_populateGrains
    if (microstructure_elemhomo(micro)) then                                                         ! how many grains are needed at this element?
      dGrains = homogenization_Ngrains(homog)                                                        ! only one set of Ngrains (other IPs are plain copies)
    else
-     dGrains = homogenization_Ngrains(homog) * mesh_NipsPerElem                                     ! each IP has Ngrains
+     dGrains = homogenization_Ngrains(homog) * theMesh%elem%nIPs                                     ! each IP has Ngrains
    endif
    Ngrains(homog,micro) = Ngrains(homog,micro) + dGrains                                            ! total grain count
    Nelems(homog,micro)  = Nelems(homog,micro) + 1_pInt                                              ! total element count
@@ -1106,16 +1144,15 @@ subroutine material_populateGrains
 
        do hme = 1_pInt, Nelems(homog,micro)
          e = elemsOfHomogMicro(homog,micro)%p(hme)                                                  ! my combination of homog and micro, only perform calculations for elements with homog, micro combinations which is indexed in cpElemsindex
-         t = mesh_elemType
          if (microstructure_elemhomo(micro)) then                                                   ! homogeneous distribution of grains over each element's IPs
-           volumeOfGrain(grain+1_pInt:grain+dGrains) = sum(mesh_ipVolume(1:mesh_NipsPerElem,e))/&
+           volumeOfGrain(grain+1_pInt:grain+dGrains) = sum(mesh_ipVolume(1:theMesh%elem%nIPs,e))/&
                                                                          real(dGrains,pReal)        ! each grain combines size of all IPs in that element
            grain = grain + dGrains                                                                  ! wind forward by Ngrains@IP
          else
-           forall (i = 1_pInt:mesh_NipsPerElem) &                                                   ! loop over IPs
+           forall (i = 1_pInt:theMesh%elem%nIPs) &                                                   ! loop over IPs
              volumeOfGrain(grain+(i-1)*dGrains+1_pInt:grain+i*dGrains) = &
                mesh_ipVolume(i,e)/real(dGrains,pReal)                                               ! assign IPvolume/Ngrains@IP to all grains of IP
-           grain = grain + mesh_NipsPerElem * dGrains                                               ! wind forward by Nips*Ngrains@IP
+           grain = grain + theMesh%elem%nIPs * dGrains                                               ! wind forward by Nips*Ngrains@IP
          endif
        enddo
 
@@ -1261,11 +1298,10 @@ subroutine material_populateGrains
 
        do hme = 1_pInt, Nelems(homog,micro)
          e = elemsOfHomogMicro(homog,micro)%p(hme)                                                  ! only perform calculations for elements with homog, micro combinations which is indexed in cpElemsindex
-         t = mesh_elemType
          if (microstructure_elemhomo(micro)) then                                                   ! homogeneous distribution of grains over each element's IPs
            m = 1_pInt                                                                               ! process only first IP
          else
-           m = mesh_NipsPerElem
+           m = theMesh%elem%nIPs
          endif
 
          do i = 1_pInt, m                                                                           ! loop over necessary IPs
@@ -1303,7 +1339,7 @@ subroutine material_populateGrains
 
          enddo
 
-         do i = i, mesh_NipsPerElem                                                                 ! loop over IPs to (possibly) distribute copies from first IP
+         do i = i, theMesh%elem%nIPs                                                                 ! loop over IPs to (possibly) distribute copies from first IP
            material_volume (1_pInt:dGrains,i,e) = material_volume (1_pInt:dGrains,1,e)
            material_phase  (1_pInt:dGrains,i,e) = material_phase  (1_pInt:dGrains,1,e)
            material_texture(1_pInt:dGrains,i,e) = material_texture(1_pInt:dGrains,1,e)

src/math.f90

@@ -118,6 +118,9 @@ module math
 !---------------------------------------------------------------------------------------------------
 
  public :: &
+#if defined(__PGI)
+   norm2, &
+#endif
    math_init, &
    math_qsort, &
    math_expand, &
@@ -351,20 +354,38 @@ end subroutine math_check
 
 !--------------------------------------------------------------------------------------------------
 !> @brief Quicksort algorithm for two-dimensional integer arrays
-! Sorting is done with respect to array(1,:)
-! and keeps array(2:N,:) linked to it.
+! Sorting is done with respect to array(sort,:) and keeps array(/=sort,:) linked to it.
+! default: sort=1
 !--------------------------------------------------------------------------------------------------
-recursive subroutine math_qsort(a, istart, iend)
+recursive subroutine math_qsort(a, istart, iend, sortDim)
 
  implicit none
  integer(pInt), dimension(:,:), intent(inout) :: a
- integer(pInt), intent(in) :: istart,iend
- integer(pInt) :: ipivot
+ integer(pInt), intent(in),optional :: istart,iend, sortDim
+ integer(pInt) :: ipivot,s,e,d
  
- if (istart < iend) then
-   ipivot = qsort_partition(a,istart, iend)
-   call math_qsort(a, istart, ipivot-1_pInt)
-   call math_qsort(a, ipivot+1_pInt, iend)
+ if(present(istart)) then
+   s = istart
+ else
+   s = lbound(a,2)
+ endif
+ 
+ if(present(iend)) then
+   e = iend
+ else
+   e = ubound(a,2)
+ endif
+ 
+  if(present(sortDim)) then
+   d = sortDim
+ else
+   d = 1
+ endif
+  
+ if (s < e) then
+   ipivot = qsort_partition(a,s, e, d)
+   call math_qsort(a, s, ipivot-1_pInt, d)
+   call math_qsort(a, ipivot+1_pInt, e, d)
  endif
 
 !--------------------------------------------------------------------------------------------------
@@ -373,37 +394,34 @@ recursive subroutine math_qsort(a, istart, iend)
  !-------------------------------------------------------------------------------------------------
  !> @brief Partitioning required for quicksort
  !-------------------------------------------------------------------------------------------------
- integer(pInt) function qsort_partition(a, istart, iend)
+ integer(pInt) function qsort_partition(a, istart, iend, sort)
  
    implicit none
    integer(pInt), dimension(:,:), intent(inout) :: a
-   integer(pInt), intent(in) :: istart,iend
-   integer(pInt) :: i,j,k,tmp
+   integer(pInt),                 intent(in)    :: istart,iend,sort
+   integer(pInt), dimension(size(a,1))          :: tmp
+   integer(pInt) :: i,j
   
    do
      ! find the first element on the right side less than or equal to the pivot point
      do j = iend, istart, -1_pInt
-       if (a(1,j) <= a(1,istart)) exit
+       if (a(sort,j) <= a(sort,istart)) exit
      enddo
      ! find the first element on the left side greater than the pivot point
      do i = istart, iend
-       if (a(1,i) > a(1,istart)) exit
-     enddo
-     if (i < j) then ! if the indexes do not cross, exchange values
-       do k = 1_pInt, int(size(a,1_pInt), pInt)
-         tmp = a(k,i)
-         a(k,i) = a(k,j)
-         a(k,j) = tmp
-       enddo
-     else           ! if they do cross, exchange left value with pivot and return with the partition index
-       do k = 1_pInt, int(size(a,1_pInt), pInt)
-         tmp = a(k,istart)
-         a(k,istart) = a(k,j)
-         a(k,j) = tmp
+       if (a(sort,i) > a(sort,istart)) exit
      enddo
+     cross: if (i >= j) then ! if the indices cross, exchange left value with pivot and return with the partition index
+       tmp         = a(:,istart)
+       a(:,istart) = a(:,j)
+       a(:,j)      = tmp
        qsort_partition = j
        return
-     endif
+     else cross ! if they do not cross, exchange values
+       tmp    = a(:,i)
+       a(:,i) = a(:,j)
+       a(:,j) = tmp
+     endif cross
    enddo
  
  end function qsort_partition
@@ -2706,4 +2724,19 @@ real(pReal) pure elemental function math_clip(a, left, right)
 
 end function math_clip
 
+
+#if defined(__PGI)
+!--------------------------------------------------------------------------------------------------
+!> @brief substitute for the norm2 intrinsic which is not available in PGI 18.10
+!--------------------------------------------------------------------------------------------------
+real(pReal) pure function norm2(v)
+ 
+ implicit none
+ real(pReal), intent(in), dimension(3) :: v
+ 
+ norm2 = sqrt(sum(v**2))
+
+end function norm2
+#endif
+
 end module math

src/mesh_FEM.f90

@@ -12,7 +12,7 @@ module mesh
 #include <petsc/finclude/petscis.h>
 #include <petsc/finclude/petscdmda.h>
  use prec, only: pReal, pInt
-
+ use mesh_base
 use PETScdmplex
 use PETScdmda
 use PETScis
@@ -27,7 +27,6 @@ use PETScis
    mesh_NcpElems, &                                                                                 !< total number of CP elements in mesh
    mesh_NcpElemsGlobal, &
    mesh_Nnodes, &                                                                                   !< total number of nodes in mesh
-   mesh_NipsPerElem, &                                                                              !< number of IPs in per element
    mesh_maxNipNeighbors
 !!!! BEGIN DEPRECATED !!!!!
  integer(pInt), public, protected :: &
@@ -80,6 +79,16 @@ use PETScis
  integer(pInt), dimension(1_pInt), parameter, public :: FE_NipNeighbors = &                  !< number of ip neighbors / cell faces in a specific cell type
  int([6],pInt)
  
+  type, public, extends(tMesh) :: tMesh_FEM
+
+   
+   contains
+   procedure, pass(self) :: tMesh_FEM_init
+   generic, public :: init => tMesh_FEM_init
+ end type tMesh_FEM
+ 
+ type(tMesh_FEM), public, protected :: theMesh
+ 
 
  public :: &
    mesh_init, &
@@ -89,6 +98,25 @@ use PETScis
 
 contains
 
+subroutine tMesh_FEM_init(self,dimen,order,nodes)
+ 
+ implicit none
+  integer, intent(in) :: dimen
+ integer(pInt), intent(in) :: order
+  real(pReal), intent(in), dimension(:,:) :: nodes
+ class(tMesh_FEM) :: self
+ 
+ if (dimen == 2_pInt) then
+   if (order == 1_pInt) call  self%tMesh%init('mesh',1_pInt,nodes)
+   if (order == 2_pInt) call  self%tMesh%init('mesh',2_pInt,nodes)
+ elseif(dimen == 3_pInt) then
+   if (order == 1_pInt) call self%tMesh%init('mesh',6_pInt,nodes)
+   if (order == 2_pInt) call self%tMesh%init('mesh',8_pInt,nodes)
+ endif
+
+ end subroutine tMesh_FEM_init
+
+
 
 !--------------------------------------------------------------------------------------------------
 !> @brief initializes the mesh by calling all necessary private routines the mesh module
@@ -213,6 +241,8 @@ subroutine mesh_init()
 
  FE_Nips(FE_geomtype(1_pInt)) = FEM_Zoo_nQuadrature(dimPlex,integrationOrder)
  mesh_maxNips = FE_Nips(1_pInt)
+ 
+ write(6,*) 'mesh_maxNips',mesh_maxNips
  call mesh_FEM_build_ipCoordinates(dimPlex,FEM_Zoo_QuadraturePoints(dimPlex,integrationOrder)%p)
  call mesh_FEM_build_ipVolumes(dimPlex)
  
@@ -238,11 +268,13 @@ subroutine mesh_init()
 !!!! COMPATIBILITY HACK !!!!
 ! for a homogeneous mesh, all elements have the same number of IPs and and cell nodes.
 ! hence, xxPerElem instead of maxXX
- mesh_NipsPerElem      = mesh_maxNips
 ! better name
  mesh_homogenizationAt = mesh_element(3,:)
  mesh_microstructureAt = mesh_element(4,:)
 !!!!!!!!!!!!!!!!!!!!!!!!
+ allocate(mesh_node0(3,mesh_Nnodes),source=0.0_pReal)
+ call theMesh%init(dimplex,integrationOrder,mesh_node0)
+ call theMesh%setNelems(mesh_NcpElems)
  
 end subroutine mesh_init
 

src/mesh_base.f90

@@ -0,0 +1,85 @@
+
+!--------------------------------------------------------------------------------------------------
+!> @author Franz Roters, Max-Planck-Institut für Eisenforschung GmbH
+!> @author Philip Eisenlohr, Max-Planck-Institut für Eisenforschung GmbH
+!> @author Christoph Koords, Max-Planck-Institut für Eisenforschung GmbH
+!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
+!> @brief Sets up the mesh for the solvers MSC.Marc,FEM, Abaqus and the spectral solver
+!--------------------------------------------------------------------------------------------------
+module mesh_base
+
+ use, intrinsic :: iso_c_binding
+ use prec, only: &
+   pStringLen, &
+   pReal, &
+   pInt
+ use element, only: &
+   tElement
+
+  implicit none
+
+!---------------------------------------------------------------------------------------------------
+!> Properties of a the whole mesh (consisting of one type of elements)
+!---------------------------------------------------------------------------------------------------
+ type, public :: tMesh
+   type(tElement) :: &
+     elem
+   real(pReal), dimension(:,:), allocatable, public :: &
+     ipVolume, &                                                                                 !< volume associated with each IP (initially!)
+     node0, &                                                                                    !< node x,y,z coordinates (initially)
+     node                                                                                        !< node x,y,z coordinates (deformed)
+   integer(pInt), dimension(:,:), allocatable, public :: &    
+     cellnodeParent                                                                               !< cellnode's parent element ID, cellnode's intra-element ID 
+   character(pStringLen) :: type = "n/a"
+   integer(pInt)         :: &
+     Nnodes, &                                                                                   !< total number of nodes in mesh
+     Nelems = -1_pInt, &
+     elemType, &
+     Ncells, &
+     nIPneighbors, &
+     NcellNodes, &
+     maxElemsPerNode
+   integer(pInt), dimension(:), allocatable, public :: &
+     homogenizationAt, &
+     microstructureAt
+   integer(pInt), dimension(:,:), allocatable, public :: &
+     connectivity
+   contains
+   procedure, pass(self) :: tMesh_base_init
+   procedure :: setNelems =>  tMesh_base_setNelems                                                  ! not needed once we compute the cells from the connectivity
+   generic, public :: init => tMesh_base_init
+ end type tMesh
+
+contains
+subroutine tMesh_base_init(self,meshType,elemType,nodes)
+ 
+ implicit none
+ class(tMesh) :: self
+ character(len=*), intent(in) :: meshType
+ integer(pInt), intent(in) :: elemType
+ real(pReal), dimension(:,:), intent(in) :: nodes
+ 
+ write(6,'(/,a)')   ' <<<+-  mesh_base_init  -+>>>'
+ 
+ write(6,*)' mesh type ',meshType
+ write(6,*)' # node    ',size(nodes,2)
+
+ self%type = meshType
+ call self%elem%init(elemType)
+ self%node0 = nodes
+ self%nNodes = size(nodes,2)
+
+end subroutine tMesh_base_init
+
+
+subroutine tMesh_base_setNelems(self,Nelems)
+ 
+  implicit none
+  class(tMesh) :: self
+  integer(pInt), intent(in) :: Nelems
+
+  self%Nelems = Nelems
+
+end subroutine tMesh_base_setNelems
+
+end module mesh_base

src/numerics.f90

@@ -177,13 +177,8 @@ subroutine numerics_init
 #include <petsc/finclude/petscsys.h>
    use petscsys
 #endif
-#if !defined(Marc4DAMASK)
-!$ use OMP_LIB, only: omp_set_num_threads                                                           ! Standard conforming module
+!$ use OMP_LIB, only: omp_set_num_threads
  implicit none
-#else  
- implicit none
-!$ include "omp_lib.h"                                                                              ! MSC.Marc includes this file on !its own, avoid conflict with the OMP_LIB module
-#endif
  integer(pInt), parameter ::                 FILEUNIT = 300_pInt
 !$ integer ::                                gotDAMASK_NUM_THREADS = 1
  integer :: i, ierr                                                                                 ! no pInt

src/source_damage_anisoBrittle.f90

@@ -12,7 +12,6 @@ module source_damage_anisoBrittle
  implicit none
  private
  integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   source_damage_anisoBrittle_sizePostResults, &                                                                !< cumulative size of post results
    source_damage_anisoBrittle_offset, &                                                                         !< which source is my current source mechanism?
    source_damage_anisoBrittle_instance                                                                          !< instance of source mechanism
 
@@ -22,31 +21,32 @@ module source_damage_anisoBrittle
  character(len=64),                   dimension(:,:),         allocatable, target, public  :: &
    source_damage_anisoBrittle_output                                                                            !< name of each post result output
    
- integer(pInt),                       dimension(:),           allocatable, target, public  :: &
-   source_damage_anisoBrittle_Noutput                                                                           !< number of outputs per instance of this source 
-
- integer(pInt),                       dimension(:),           allocatable,         private :: &
-   source_damage_anisoBrittle_totalNcleavage                                                                    !< total number of cleavage systems
-   
  integer(pInt),                       dimension(:,:),         allocatable,         private :: &
    source_damage_anisoBrittle_Ncleavage                                                                         !< number of cleavage systems per family
 
- real(pReal),                         dimension(:),           allocatable,         private :: &
-   source_damage_anisoBrittle_aTol, &
-   source_damage_anisoBrittle_sdot_0, &
-   source_damage_anisoBrittle_N
-
- real(pReal),                         dimension(:,:),         allocatable,         private :: &
-   source_damage_anisoBrittle_critDisp, &
-   source_damage_anisoBrittle_critLoad
-
  enum, bind(c) 
    enumerator :: undefined_ID, &
                  damage_drivingforce_ID
  end enum                                                
 
- integer(kind(undefined_ID)),         dimension(:,:),         allocatable,          private :: & 
-   source_damage_anisoBrittle_outputID                                                                  !< ID of each post result output
+
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   real(pReal) :: &
+     aTol, &
+     sdot_0, &
+     N
+   real(pReal), dimension(:), allocatable :: &
+     critDisp, &
+     critLoad
+   integer(pInt) :: &
+     totalNcleavage
+   integer(pInt), dimension(:), allocatable :: &
+     Ncleavage
+   integer(kind(undefined_ID)), allocatable, dimension(:) :: &
+     outputID                                                                                       !< ID of each post result output
+ end type tParameters
+
+ type(tParameters), dimension(:), allocatable, private :: param                                     !< containers of constitutive parameters (len Ninstance)
 
 
  public :: &
@@ -62,30 +62,24 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_anisoBrittle_init(fileUnit)
+subroutine source_damage_anisoBrittle_init
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
    compiler_options
 #endif
+ use prec, only: &
+   pStringLen
  use debug, only: &
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
-   IO_warning, &
-   IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_error
+    use math, only: &
+   math_expand
  use material, only: &
+   material_allocateSourceState, &
    phase_source, &
    phase_Nsources, &
    phase_Noutput, &
@@ -94,35 +88,34 @@ subroutine source_damage_anisoBrittle_init(fileUnit)
    material_phase, &
    sourceState
  use config, only: &
+   config_phase, &
    material_Nphase, &
    MATERIAL_partPhase
- use numerics,only: &
-   numerics_integrator
  use lattice, only: &
-   lattice_maxNcleavageFamily, &
-   lattice_NcleavageSystem
+   lattice_maxNcleavageFamily
 
  implicit none
- integer(pInt), intent(in) :: fileUnit
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,mySize=0_pInt,phase,instance,source,sourceOffset,o
- integer(pInt) :: sizeState, sizeDotState, sizeDeltaState
- integer(pInt) :: NofMyPhase   
- integer(pInt) :: Nchunks_CleavageFamilies = 0_pInt, j   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: Ninstance,phase,instance,source,sourceOffset
+ integer(pInt) :: NofMyPhase,p   ,i
+ integer(pInt),          dimension(0), parameter :: emptyIntArray    = [integer(pInt)::]
+ character(len=65536),   dimension(0), parameter :: emptyStringArray = [character(len=65536)::]
+ integer(kind(undefined_ID)) :: &
+   outputID
 
- write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_damage_anisoBrittle_LABEL//' init  -+>>>'
- write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
+ character(len=pStringLen) :: &
+   extmsg = ''
+ character(len=65536), dimension(:), allocatable :: &
+   outputs
+
+ write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_DAMAGE_ANISOBRITTLE_LABEL//' init  -+>>>'
 #include "compilation_info.f90"
 
- maxNinstance = int(count(phase_source == SOURCE_damage_anisoBrittle_ID),pInt)
- if (maxNinstance == 0_pInt) return
+ Ninstance = int(count(phase_source == SOURCE_damage_anisoBrittle_ID),pInt)
+ if (Ninstance == 0_pInt) return
  
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
-   write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
+   write(6,'(a16,1x,i5,/)') '# instances:',Ninstance
  
  allocate(source_damage_anisoBrittle_offset(material_Nphase), source=0_pInt)
  allocate(source_damage_anisoBrittle_instance(material_Nphase), source=0_pInt)
@@ -134,159 +127,88 @@ subroutine source_damage_anisoBrittle_init(fileUnit)
    enddo    
  enddo
  
- allocate(source_damage_anisoBrittle_sizePostResults(maxNinstance),                      source=0_pInt)
- allocate(source_damage_anisoBrittle_sizePostResult(maxval(phase_Noutput),maxNinstance), source=0_pInt)
- allocate(source_damage_anisoBrittle_output(maxval(phase_Noutput),maxNinstance))
+ allocate(source_damage_anisoBrittle_sizePostResult(maxval(phase_Noutput),Ninstance), source=0_pInt)
+ allocate(source_damage_anisoBrittle_output(maxval(phase_Noutput),Ninstance))
           source_damage_anisoBrittle_output = ''
- allocate(source_damage_anisoBrittle_outputID(maxval(phase_Noutput),maxNinstance),       source=undefined_ID)
- allocate(source_damage_anisoBrittle_Noutput(maxNinstance),                              source=0_pInt) 
- allocate(source_damage_anisoBrittle_critDisp(lattice_maxNcleavageFamily,maxNinstance),  source=0.0_pReal) 
- allocate(source_damage_anisoBrittle_critLoad(lattice_maxNcleavageFamily,maxNinstance),  source=0.0_pReal) 
- allocate(source_damage_anisoBrittle_Ncleavage(lattice_maxNcleavageFamily,maxNinstance), source=0_pInt)
- allocate(source_damage_anisoBrittle_totalNcleavage(maxNinstance),                       source=0_pInt)
- allocate(source_damage_anisoBrittle_aTol(maxNinstance),                                 source=0.0_pReal) 
- allocate(source_damage_anisoBrittle_sdot_0(maxNinstance),                               source=0.0_pReal) 
- allocate(source_damage_anisoBrittle_N(maxNinstance),                                    source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ allocate(source_damage_anisoBrittle_Ncleavage(lattice_maxNcleavageFamily,Ninstance), source=0_pInt)
 
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_source(:,phase) == SOURCE_damage_anisoBrittle_ID)) then ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = source_damage_anisoBrittle_instance(phase)                                          ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                             ! extract key
-     select case(tag)
-       case ('(output)')
-         select case(IO_lc(IO_stringValue(line,chunkPos,2_pInt)))
-           case ('anisobrittle_drivingforce')
-             source_damage_anisoBrittle_Noutput(instance) = source_damage_anisoBrittle_Noutput(instance) + 1_pInt
-             source_damage_anisoBrittle_outputID(source_damage_anisoBrittle_Noutput(instance),instance) = damage_drivingforce_ID
-             source_damage_anisoBrittle_output(source_damage_anisoBrittle_Noutput(instance),instance) = &
-                                                       IO_lc(IO_stringValue(line,chunkPos,2_pInt))
-          end select
+ allocate(param(Ninstance))
  
-       case ('anisobrittle_atol')
-         source_damage_anisoBrittle_aTol(instance) = IO_floatValue(line,chunkPos,2_pInt)
+ do p=1, size(config_phase)
+   if (all(phase_source(:,p) /= SOURCE_DAMAGE_ANISOBRITTLE_ID)) cycle
+   associate(prm => param(source_damage_anisoBrittle_instance(p)), &
+             config => config_phase(p))
              
-       case ('anisobrittle_sdot0')
-         source_damage_anisoBrittle_sdot_0(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%aTol      = config%getFloat('anisobrittle_atol',defaultVal = 1.0e-3_pReal)
 
-       case ('anisobrittle_ratesensitivity')
-         source_damage_anisoBrittle_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%N         = config%getFloat('anisobrittle_ratesensitivity')
+   prm%sdot_0    = config%getFloat('anisobrittle_sdot0')
    
-       case ('ncleavage')  !
-         Nchunks_CleavageFamilies = chunkPos(1) - 1_pInt
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           source_damage_anisoBrittle_Ncleavage(j,instance) = IO_intValue(line,chunkPos,1_pInt+j)
-         enddo
+   ! sanity checks
+   if (prm%aTol      < 0.0_pReal) extmsg = trim(extmsg)//' anisobrittle_atol'
    
-       case ('anisobrittle_criticaldisplacement')
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           source_damage_anisoBrittle_critDisp(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
+   if (prm%N        <= 0.0_pReal) extmsg = trim(extmsg)//' anisobrittle_ratesensitivity'
+   if (prm%sdot_0   <= 0.0_pReal) extmsg = trim(extmsg)//' anisobrittle_sdot0'
    
-       case ('anisobrittle_criticalload')
-         do j = 1_pInt, Nchunks_CleavageFamilies
-           source_damage_anisoBrittle_critLoad(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
+   prm%Ncleavage = config%getInts('ncleavage',defaultVal=emptyIntArray)
 
-     end select
-   endif; endif
- enddo parsingFile
+   prm%critDisp = config%getFloats('anisobrittle_criticaldisplacement',requiredSize=size(prm%Ncleavage))
+   prm%critLoad = config%getFloats('anisobrittle_criticalload',        requiredSize=size(prm%Ncleavage))
+
+     ! expand: family => system
+     prm%critDisp  = math_expand(prm%critDisp, prm%Ncleavage)
+     prm%critLoad  = math_expand(prm%critLoad, prm%Ncleavage)
+     
+     if (any(prm%critLoad < 0.0_pReal))     extmsg = trim(extmsg)//' anisobrittle_criticalload'
+    if (any(prm%critDisp < 0.0_pReal))     extmsg = trim(extmsg)//' anisobrittle_criticaldisplacement'  
+!--------------------------------------------------------------------------------------------------
+!  exit if any parameter is out of range
+   if (extmsg /= '') &
+     call IO_error(211_pInt,ext_msg=trim(extmsg)//'('//SOURCE_DAMAGE_ANISOBRITTLE_LABEL//')')
 
 !--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, material_Nphase  
-   myPhase: if (any(phase_source(:,phase) == SOURCE_damage_anisoBrittle_ID)) then
-     instance = source_damage_anisoBrittle_instance(phase)
-     source_damage_anisoBrittle_Ncleavage(1:lattice_maxNcleavageFamily,instance) = &
-       min(lattice_NcleavageSystem(1:lattice_maxNcleavageFamily,phase),&                            ! limit active cleavage systems per family to min of available and requested
-           source_damage_anisoBrittle_Ncleavage(1:lattice_maxNcleavageFamily,instance))
-     source_damage_anisoBrittle_totalNcleavage(instance)  = sum(source_damage_anisoBrittle_Ncleavage(:,instance)) ! how many cleavage systems altogether
-     if (source_damage_anisoBrittle_aTol(instance) < 0.0_pReal) &
-       source_damage_anisoBrittle_aTol(instance) = 1.0e-3_pReal                                     ! default absolute tolerance 1e-3
-     if (source_damage_anisoBrittle_sdot_0(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='sdot_0 ('//SOURCE_damage_anisoBrittle_LABEL//')')
-     if (any(source_damage_anisoBrittle_critDisp(1:Nchunks_CleavageFamilies,instance) < 0.0_pReal)) &
-       call IO_error(211_pInt,el=instance,ext_msg='critical_displacement ('//SOURCE_damage_anisoBrittle_LABEL//')')
-     if (any(source_damage_anisoBrittle_critLoad(1:Nchunks_CleavageFamilies,instance) < 0.0_pReal)) &
-       call IO_error(211_pInt,el=instance,ext_msg='critical_load ('//SOURCE_damage_anisoBrittle_LABEL//')')
-     if (source_damage_anisoBrittle_N(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='rate_sensitivity ('//SOURCE_damage_anisoBrittle_LABEL//')')
-   endif myPhase
- enddo sanityChecks
+!  output pararameters
+   outputs = config%getStrings('(output)',defaultVal=emptyStringArray)
+   allocate(prm%outputID(0))
+   do i=1_pInt, size(outputs)
+     outputID = undefined_ID
+     select case(outputs(i))
      
- initializeInstances: do phase = 1_pInt, material_Nphase
-   if (any(phase_source(:,phase) == SOURCE_damage_anisoBrittle_ID)) then
+       case ('anisobrittle_drivingforce')
+         source_damage_anisoBrittle_sizePostResult(i,source_damage_anisoBrittle_instance(p)) = 1_pInt
+         source_damage_anisoBrittle_output(i,source_damage_anisoBrittle_instance(p)) = outputs(i)
+         prm%outputID = [prm%outputID, damage_drivingforce_ID]
+
+     end select
+
+   enddo
+
+   end associate
+   
+   phase = p
    NofMyPhase=count(material_phase==phase)
    instance = source_damage_anisoBrittle_instance(phase)
    sourceOffset = source_damage_anisoBrittle_offset(phase)
 
-!--------------------------------------------------------------------------------------------------
-!  Determine size of postResults array
-     outputsLoop: do o = 1_pInt,source_damage_anisoBrittle_Noutput(instance)
-       select case(source_damage_anisoBrittle_outputID(o,instance))
-         case(damage_drivingforce_ID)
-           mySize = 1_pInt
-       end select
 
-       if (mySize > 0_pInt) then  ! any meaningful output found
-          source_damage_anisoBrittle_sizePostResult(o,instance) = mySize
-          source_damage_anisoBrittle_sizePostResults(instance)  = source_damage_anisoBrittle_sizePostResults(instance) + mySize
-       endif
-     enddo outputsLoop
+   call material_allocateSourceState(phase,sourceOffset,NofMyPhase,1_pInt,1_pInt,0_pInt)
+   sourceState(phase)%p(sourceOffset)%sizePostResults = sum(source_damage_anisoBrittle_sizePostResult(:,instance))
+   sourceState(phase)%p(sourceOffset)%aTolState=param(instance)%aTol
 
-!--------------------------------------------------------------------------------------------------
-! Determine size of state array
-     sizeDotState              = 1_pInt
-     sizeDeltaState            = 0_pInt
-     sizeState                 = 1_pInt
 
-     sourceState(phase)%p(sourceOffset)%sizeState      = sizeState
-     sourceState(phase)%p(sourceOffset)%sizeDotState   = sizeDotState
-     sourceState(phase)%p(sourceOffset)%sizeDeltaState = sizeDeltaState
-     sourceState(phase)%p(sourceOffset)%sizePostResults = source_damage_anisoBrittle_sizePostResults(instance)
-     allocate(sourceState(phase)%p(sourceOffset)%aTolState           (sizeState),                &
-              source=source_damage_anisoBrittle_aTol(instance))
-     allocate(sourceState(phase)%p(sourceOffset)%state0              (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%partionedState0     (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%subState0           (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%state               (sizeState,NofMyPhase),     source=0.0_pReal)
+   source_damage_anisoBrittle_Ncleavage(1:size(param(instance)%Ncleavage),instance) = param(instance)%Ncleavage
+ enddo
 
-     allocate(sourceState(phase)%p(sourceOffset)%dotState            (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%deltaState        (sizeDeltaState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 1_pInt)) then
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState  (sizeDotState,NofMyPhase),  source=0.0_pReal)
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState2 (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     endif
-     if (any(numerics_integrator == 4_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RK4dotState       (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 5_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RKCK45dotState    (6,sizeDotState,NofMyPhase),source=0.0_pReal)
  
-   endif
- 
- enddo initializeInstances
 end subroutine source_damage_anisoBrittle_init
 
 !--------------------------------------------------------------------------------------------------
 !> @brief calculates derived quantities from state
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_anisoBrittle_dotState(Tstar_v, ipc, ip, el)
+subroutine source_damage_anisoBrittle_dotState(S, ipc, ip, el)
+ use math, only: &
+   math_mul33xx33
  use material, only: &
    phaseAt, phasememberAt, &
    sourceState, &
@@ -294,7 +216,7 @@ subroutine source_damage_anisoBrittle_dotState(Tstar_v, ipc, ip, el)
    damage, &
    damageMapping
  use lattice, only: &
-   lattice_Scleavage_v, &
+   lattice_Scleavage, &
    lattice_maxNcleavageFamily, &
    lattice_NcleavageSystem
 
@@ -303,8 +225,8 @@ subroutine source_damage_anisoBrittle_dotState(Tstar_v, ipc, ip, el)
    ipc, &                                                                                           !< component-ID of integration point
    ip, &                                                                                            !< integration point
    el                                                                                               !< element
- real(pReal),  intent(in), dimension(6) :: &
-   Tstar_v                                                                                          !< 2nd Piola Kirchhoff stress tensor (Mandel)
+ real(pReal),  intent(in), dimension(3,3) :: &
+   S
  integer(pInt) :: &
    phase, &
    constituent, &
@@ -312,7 +234,7 @@ subroutine source_damage_anisoBrittle_dotState(Tstar_v, ipc, ip, el)
    sourceOffset, &
    damageOffset, &
    homog, &
-   f, i, index_myFamily
+   f, i, index_myFamily, index
  real(pReal) :: &
    traction_d, traction_t, traction_n, traction_crit
 
@@ -324,23 +246,26 @@ subroutine source_damage_anisoBrittle_dotState(Tstar_v, ipc, ip, el)
  damageOffset = damageMapping(homog)%p(ip,el)
  
  sourceState(phase)%p(sourceOffset)%dotState(1,constituent) = 0.0_pReal
+ 
+ index = 1_pInt
  do f = 1_pInt,lattice_maxNcleavageFamily
    index_myFamily = sum(lattice_NcleavageSystem(1:f-1_pInt,phase))                                  ! at which index starts my family
    do i = 1_pInt,source_damage_anisoBrittle_Ncleavage(f,instance)                                   ! process each (active) cleavage system in family
-     traction_d    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,1,index_myFamily+i,phase))
-     traction_t    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,2,index_myFamily+i,phase))
-     traction_n    = dot_product(Tstar_v,lattice_Scleavage_v(1:6,3,index_myFamily+i,phase))
+     traction_d    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,1,index_myFamily+i,phase))
+     traction_t    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,2,index_myFamily+i,phase))
+     traction_n    = math_mul33xx33(S,lattice_Scleavage(1:3,1:3,3,index_myFamily+i,phase))
      
-     traction_crit = source_damage_anisoBrittle_critLoad(f,instance)* &
+     traction_crit = param(instance)%critLoad(index)* &
                      damage(homog)%p(damageOffset)*damage(homog)%p(damageOffset)
      sourceState(phase)%p(sourceOffset)%dotState(1,constituent) = &
        sourceState(phase)%p(sourceOffset)%dotState(1,constituent) + &
-       source_damage_anisoBrittle_sdot_0(instance)* &
-       ((max(0.0_pReal, abs(traction_d) - traction_crit)/traction_crit)**source_damage_anisoBrittle_N(instance) + &
-        (max(0.0_pReal, abs(traction_t) - traction_crit)/traction_crit)**source_damage_anisoBrittle_N(instance) + &
-        (max(0.0_pReal, abs(traction_n) - traction_crit)/traction_crit)**source_damage_anisoBrittle_N(instance))/ &
-       source_damage_anisoBrittle_critDisp(f,instance)
+       param(instance)%sdot_0* &
+       ((max(0.0_pReal, abs(traction_d) - traction_crit)/traction_crit)**param(instance)%N + &
+        (max(0.0_pReal, abs(traction_t) - traction_crit)/traction_crit)**param(instance)%N + &
+        (max(0.0_pReal, abs(traction_n) - traction_crit)/traction_crit)**param(instance)%N)/ &
+       param(instance)%critDisp(index)
 
+   index = index + 1_pInt
    enddo
  enddo
 
@@ -349,30 +274,26 @@ end subroutine source_damage_anisoBrittle_dotState
 !--------------------------------------------------------------------------------------------------
 !> @brief returns local part of nonlocal damage driving force
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, ipc, ip,  el)
+subroutine source_damage_anisobrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
+   phase, &
+   constituent
  real(pReal),  intent(in) :: &
    phi
  real(pReal),  intent(out) :: &
    localphiDot, &
    dLocalphiDot_dPhi
  integer(pInt) :: &
-   phase, constituent, sourceOffset
+   sourceOffset
 
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  sourceOffset = source_damage_anisoBrittle_offset(phase)
  
- localphiDot = 1.0_pReal - &
-               sourceState(phase)%p(sourceOffset)%state(1,constituent)*phi
+ localphiDot = 1.0_pReal &
+             - sourceState(phase)%p(sourceOffset)%state(1,constituent)*phi
  
  dLocalphiDot_dPhi = -sourceState(phase)%p(sourceOffset)%state(1,constituent)
  
@@ -381,33 +302,28 @@ end subroutine source_damage_anisobrittle_getRateAndItsTangent
 !--------------------------------------------------------------------------------------------------
 !> @brief return array of local damage results
 !--------------------------------------------------------------------------------------------------
-function source_damage_anisoBrittle_postResults(ipc,ip,el)
+function source_damage_anisoBrittle_postResults(phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
- real(pReal), dimension(source_damage_anisoBrittle_sizePostResults( &
-                          source_damage_anisoBrittle_instance(phaseAt(ipc,ip,el)))) :: &
+   phase, &
+   constituent
+ real(pReal), dimension(sum(source_damage_anisoBrittle_sizePostResult(:, &
+                          source_damage_anisoBrittle_instance(phase)))) :: &
    source_damage_anisoBrittle_postResults
 
  integer(pInt) :: &
-   instance, phase, constituent, sourceOffset, o, c
+   instance, sourceOffset, o, c
    
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  instance = source_damage_anisoBrittle_instance(phase)
  sourceOffset = source_damage_anisoBrittle_offset(phase)
 
  c = 0_pInt
- source_damage_anisoBrittle_postResults = 0.0_pReal
 
- do o = 1_pInt,source_damage_anisoBrittle_Noutput(instance)
-    select case(source_damage_anisoBrittle_outputID(o,instance))
+ do o = 1_pInt,size(param(instance)%outputID)
+    select case(param(instance)%outputID(o))
       case (damage_drivingforce_ID)
         source_damage_anisoBrittle_postResults(c+1_pInt) = &
           sourceState(phase)%p(sourceOffset)%state(1,constituent)

src/source_damage_anisoDuctile.f90

@@ -12,7 +12,6 @@ module source_damage_anisoDuctile
  implicit none
  private
  integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   source_damage_anisoDuctile_sizePostResults, &                                                                !< cumulative size of post results
    source_damage_anisoDuctile_offset, &                                                                         !< which source is my current damage mechanism?
    source_damage_anisoDuctile_instance                                                                          !< instance of damage source mechanism
 
@@ -22,35 +21,31 @@ module source_damage_anisoDuctile
  character(len=64),                   dimension(:,:),         allocatable, target, public  :: &
    source_damage_anisoDuctile_output                                                                            !< name of each post result output
    
- integer(pInt),                       dimension(:),           allocatable, target, public  :: &
-   source_damage_anisoDuctile_Noutput                                                                           !< number of outputs per instance of this damage 
-   
- integer(pInt),                       dimension(:),           allocatable,         private :: &
-   source_damage_anisoDuctile_totalNslip                                                                    !< total number of slip systems
 
  integer(pInt),                       dimension(:,:),         allocatable,         private :: &
    source_damage_anisoDuctile_Nslip                                                                         !< number of slip systems per family
    
- real(pReal),                         dimension(:),           allocatable,         private :: &
-   source_damage_anisoDuctile_aTol
-
- real(pReal),                         dimension(:,:),         allocatable,         private :: &
-   source_damage_anisoDuctile_critPlasticStrain
-
- real(pReal),                         dimension(:),           allocatable,         private :: &
-   source_damage_anisoDuctile_sdot_0, &
-   source_damage_anisoDuctile_N
-
- real(pReal),                         dimension(:,:),         allocatable,         private :: &
-   source_damage_anisoDuctile_critLoad
-   
  enum, bind(c) 
    enumerator :: undefined_ID, &
                  damage_drivingforce_ID
  end enum 
 
- integer(kind(undefined_ID)),         dimension(:,:),         allocatable,          private :: & 
-   source_damage_anisoDuctile_outputID                                                                  !< ID of each post result output
+
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   real(pReal) :: &
+     aTol, &
+     N
+   real(pReal), dimension(:), allocatable :: &
+     critPlasticStrain
+   integer(pInt) :: &
+     totalNslip
+   integer(pInt), dimension(:), allocatable :: &
+     Nslip
+   integer(kind(undefined_ID)), allocatable, dimension(:) :: &
+     outputID
+ end type tParameters
+
+ type(tParameters), dimension(:), allocatable, private :: param                                     !< containers of constitutive parameters (len Ninstance)
 
 
  public :: &
@@ -66,30 +61,24 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_anisoDuctile_init(fileUnit)
+subroutine source_damage_anisoDuctile_init
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
    compiler_options
 #endif
+ use prec, only: &
+   pStringLen
  use debug, only: &
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
-   IO_warning, &
-   IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_error
+    use math, only: &
+   math_expand
  use material, only: &
+   material_allocateSourceState, &
    phase_source, &
    phase_Nsources, &
    phase_Noutput, &
@@ -98,35 +87,35 @@ subroutine source_damage_anisoDuctile_init(fileUnit)
    material_phase, &  
    sourceState
  use config, only: &
+   config_phase, &
    material_Nphase, &
    MATERIAL_partPhase
- use numerics,only: &
-   numerics_integrator
  use lattice, only: &
-   lattice_maxNslipFamily, &
-   lattice_NslipSystem
+   lattice_maxNslipFamily
    
  implicit none
- integer(pInt), intent(in) :: fileUnit
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,mySize=0_pInt,phase,instance,source,sourceOffset,o
- integer(pInt) :: sizeState, sizeDotState, sizeDeltaState
- integer(pInt) :: NofMyPhase   
- integer(pInt) :: Nchunks_SlipFamilies = 0_pInt, j   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: Ninstance,phase,instance,source,sourceOffset
+ integer(pInt) :: NofMyPhase,p ,i
 
- write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_damage_anisoDuctile_LABEL//' init  -+>>>'
- write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
+ integer(pInt),          dimension(0), parameter :: emptyIntArray    = [integer(pInt)::]
+ character(len=65536),   dimension(0), parameter :: emptyStringArray = [character(len=65536)::]
+ integer(kind(undefined_ID)) :: &
+   outputID
+
+ character(len=pStringLen) :: &
+   extmsg = ''
+ character(len=65536), dimension(:), allocatable :: &
+   outputs
+
+ write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_DAMAGE_ANISODUCTILE_LABEL//' init  -+>>>'
 #include "compilation_info.f90"
 
- maxNinstance = int(count(phase_source == SOURCE_damage_anisoDuctile_ID),pInt)
- if (maxNinstance == 0_pInt) return
+ Ninstance = int(count(phase_source == SOURCE_damage_anisoDuctile_ID),pInt)
+ if (Ninstance == 0_pInt) return
  
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
-   write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
+   write(6,'(a16,1x,i5,/)') '# instances:',Ninstance
  
  allocate(source_damage_anisoDuctile_offset(material_Nphase), source=0_pInt)
  allocate(source_damage_anisoDuctile_instance(material_Nphase), source=0_pInt)
@@ -138,151 +127,75 @@ subroutine source_damage_anisoDuctile_init(fileUnit)
    enddo    
  enddo
    
- allocate(source_damage_anisoDuctile_sizePostResults(maxNinstance),                     source=0_pInt)
- allocate(source_damage_anisoDuctile_sizePostResult(maxval(phase_Noutput),maxNinstance),source=0_pInt)
- allocate(source_damage_anisoDuctile_output(maxval(phase_Noutput),maxNinstance))
+ allocate(source_damage_anisoDuctile_sizePostResult(maxval(phase_Noutput),Ninstance),source=0_pInt)
+ allocate(source_damage_anisoDuctile_output(maxval(phase_Noutput),Ninstance))
           source_damage_anisoDuctile_output = ''
- allocate(source_damage_anisoDuctile_outputID(maxval(phase_Noutput),maxNinstance),      source=undefined_ID)
- allocate(source_damage_anisoDuctile_Noutput(maxNinstance),                             source=0_pInt) 
- allocate(source_damage_anisoDuctile_critLoad(lattice_maxNslipFamily,maxNinstance), source=0.0_pReal) 
- allocate(source_damage_anisoDuctile_critPlasticStrain(lattice_maxNslipFamily,maxNinstance),source=0.0_pReal) 
- allocate(source_damage_anisoDuctile_Nslip(lattice_maxNslipFamily,maxNinstance),        source=0_pInt)
- allocate(source_damage_anisoDuctile_totalNslip(maxNinstance),                          source=0_pInt)
- allocate(source_damage_anisoDuctile_N(maxNinstance),                                   source=0.0_pReal) 
- allocate(source_damage_anisoDuctile_sdot_0(maxNinstance),                              source=0.0_pReal) 
- allocate(source_damage_anisoDuctile_aTol(maxNinstance),                                source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ allocate(source_damage_anisoDuctile_Nslip(lattice_maxNslipFamily,Ninstance),        source=0_pInt)
 
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_source(:,phase) == SOURCE_damage_anisoDuctile_ID)) then         ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = source_damage_anisoDuctile_instance(phase)                                                         ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                             ! extract key
-     select case(tag)
-       case ('(output)')
-         select case(IO_lc(IO_stringValue(line,chunkPos,2_pInt)))
-           case ('anisoductile_drivingforce')
-             source_damage_anisoDuctile_Noutput(instance) = source_damage_anisoDuctile_Noutput(instance) + 1_pInt
-             source_damage_anisoDuctile_outputID(source_damage_anisoDuctile_Noutput(instance),instance) = damage_drivingforce_ID
-             source_damage_anisoDuctile_output(source_damage_anisoDuctile_Noutput(instance),instance) = &
-                                                       IO_lc(IO_stringValue(line,chunkPos,2_pInt))
-          end select
+ allocate(param(Ninstance))
  
-       case ('anisoductile_atol')
-         source_damage_anisoDuctile_aTol(instance) = IO_floatValue(line,chunkPos,2_pInt)
+ do p=1, size(config_phase)
+   if (all(phase_source(:,p) /= SOURCE_DAMAGE_ANISODUCTILE_ID)) cycle
+   associate(prm => param(source_damage_anisoDuctile_instance(p)), &
+             config => config_phase(p))
              
-       case ('nslip')  !
-         Nchunks_SlipFamilies = chunkPos(1) - 1_pInt
-         do j = 1_pInt, Nchunks_SlipFamilies
-           source_damage_anisoDuctile_Nslip(j,instance) = IO_intValue(line,chunkPos,1_pInt+j)
-         enddo
+   prm%aTol   = config%getFloat('anisoductile_atol',defaultVal = 1.0e-3_pReal)
 
-       case ('anisoductile_sdot0')
-         source_damage_anisoDuctile_sdot_0(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%N      = config%getFloat('anisoductile_ratesensitivity')
    
-       case ('anisoductile_criticalplasticstrain')
-         do j = 1_pInt, Nchunks_SlipFamilies
-           source_damage_anisoDuctile_critPlasticStrain(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
+   ! sanity checks
+   if (prm%aTol                 < 0.0_pReal) extmsg = trim(extmsg)//' anisoductile_atol'
    
-       case ('anisoductile_ratesensitivity')
-         source_damage_anisoDuctile_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   if (prm%N                   <= 0.0_pReal) extmsg = trim(extmsg)//' anisoductile_ratesensitivity'
    
-       case ('anisoductile_criticalload')
-         do j = 1_pInt, Nchunks_SlipFamilies
-           source_damage_anisoDuctile_critLoad(j,instance) = IO_floatValue(line,chunkPos,1_pInt+j)
-         enddo
+   prm%Nslip  = config%getInts('nslip',defaultVal=emptyIntArray)
    
-     end select
-   endif; endif
- enddo parsingFile
+   prm%critPlasticStrain = config%getFloats('anisoductile_criticalplasticstrain',requiredSize=size(prm%Nslip))
+
+     ! expand: family => system
+     prm%critPlasticStrain   = math_expand(prm%critPlasticStrain,  prm%Nslip)
+     
+          if (any(prm%critPlasticStrain < 0.0_pReal))     extmsg = trim(extmsg)//' anisoductile_criticalplasticstrain'
    
 !--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, size(phase_source)   
-   myPhase: if (any(phase_source(:,phase) == SOURCE_damage_anisoDuctile_ID)) then
-     instance = source_damage_anisoDuctile_instance(phase)
-     source_damage_anisoDuctile_Nslip(1:lattice_maxNslipFamily,instance) = &
-       min(lattice_NslipSystem(1:lattice_maxNslipFamily,phase),&                                    ! limit active cleavage systems per family to min of available and requested
-           source_damage_anisoDuctile_Nslip(1:lattice_maxNslipFamily,instance))
-         source_damage_anisoDuctile_totalNslip(instance) = sum(source_damage_anisoDuctile_Nslip(:,instance))
-     if (source_damage_anisoDuctile_aTol(instance) < 0.0_pReal) &
-       source_damage_anisoDuctile_aTol(instance) = 1.0e-3_pReal                                     ! default absolute tolerance 1e-3
-     if (source_damage_anisoDuctile_sdot_0(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='sdot_0 ('//SOURCE_damage_anisoDuctile_LABEL//')')
-     if (any(source_damage_anisoDuctile_critPlasticStrain(:,instance) < 0.0_pReal)) &
-       call IO_error(211_pInt,el=instance,ext_msg='criticaPlasticStrain ('//SOURCE_damage_anisoDuctile_LABEL//')')
-     if (source_damage_anisoDuctile_N(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='rate_sensitivity ('//SOURCE_damage_anisoDuctile_LABEL//')')
-   endif myPhase
- enddo sanityChecks
+!  exit if any parameter is out of range
+   if (extmsg /= '') &
+     call IO_error(211_pInt,ext_msg=trim(extmsg)//'('//SOURCE_DAMAGE_ANISODUCTILE_LABEL//')')
 
+!--------------------------------------------------------------------------------------------------
+!  output pararameters
+   outputs = config%getStrings('(output)',defaultVal=emptyStringArray)
+   allocate(prm%outputID(0))
+   do i=1_pInt, size(outputs)
+     outputID = undefined_ID
+     select case(outputs(i))
+     
+       case ('anisoductile_drivingforce')
+         source_damage_anisoDuctile_sizePostResult(i,source_damage_anisoDuctile_instance(p)) = 1_pInt
+         source_damage_anisoDuctile_output(i,source_damage_anisoDuctile_instance(p)) = outputs(i)
+         prm%outputID = [prm%outputID, damage_drivingforce_ID]
+
+     end select
+
+   enddo
+
+   end associate
+   
+   phase = p
    
- initializeInstances: do phase = 1_pInt, material_Nphase
-   if (any(phase_source(:,phase) == SOURCE_damage_anisoDuctile_ID)) then
    NofMyPhase=count(material_phase==phase)
    instance = source_damage_anisoDuctile_instance(phase)
    sourceOffset = source_damage_anisoDuctile_offset(phase)
 
-!--------------------------------------------------------------------------------------------------
-!  Determine size of postResults array
-     outputsLoop: do o = 1_pInt,source_damage_anisoDuctile_Noutput(instance)
-       select case(source_damage_anisoDuctile_outputID(o,instance))
-         case(damage_drivingforce_ID)
-           mySize = 1_pInt
-       end select
+   call material_allocateSourceState(phase,sourceOffset,NofMyPhase,1_pInt,1_pInt,0_pInt)
+   sourceState(phase)%p(sourceOffset)%sizePostResults = sum(source_damage_anisoDuctile_sizePostResult(:,instance))
+   sourceState(phase)%p(sourceOffset)%aTolState=param(instance)%aTol
    
-       if (mySize > 0_pInt) then  ! any meaningful output found
-          source_damage_anisoDuctile_sizePostResult(o,instance) = mySize
-          source_damage_anisoDuctile_sizePostResults(instance)  = source_damage_anisoDuctile_sizePostResults(instance) + mySize
-       endif
-     enddo outputsLoop
+   source_damage_anisoDuctile_Nslip(1:size(param(instance)%Nslip),instance) = param(instance)%Nslip
    
-!--------------------------------------------------------------------------------------------------
-! Determine size of state array
-     sizeDotState              = 1_pInt
-     sizeDeltaState            = 0_pInt
-     sizeState                 = 1_pInt
-     sourceState(phase)%p(sourceOffset)%sizeState      = sizeState
-     sourceState(phase)%p(sourceOffset)%sizeDotState   = sizeDotState
-     sourceState(phase)%p(sourceOffset)%sizeDeltaState = sizeDeltaState
-     sourceState(phase)%p(sourceOffset)%sizePostResults = source_damage_anisoDuctile_sizePostResults(instance)
-     allocate(sourceState(phase)%p(sourceOffset)%aTolState           (sizeState),                &
-              source=source_damage_anisoDuctile_aTol(instance))
-     allocate(sourceState(phase)%p(sourceOffset)%state0              (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%partionedState0     (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%subState0           (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%state               (sizeState,NofMyPhase),     source=0.0_pReal)
+ enddo
   
-     allocate(sourceState(phase)%p(sourceOffset)%dotState            (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%deltaState        (sizeDeltaState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 1_pInt)) then
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState  (sizeDotState,NofMyPhase),  source=0.0_pReal)
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState2 (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     endif
-     if (any(numerics_integrator == 4_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RK4dotState       (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 5_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RKCK45dotState    (6,sizeDotState,NofMyPhase),source=0.0_pReal)
-
-   endif
- 
- enddo initializeInstances
 end subroutine source_damage_anisoDuctile_init
 
 !--------------------------------------------------------------------------------------------------
@@ -326,8 +239,7 @@ subroutine source_damage_anisoDuctile_dotState(ipc, ip, el)
      sourceState(phase)%p(sourceOffset)%dotState(1,constituent) = &
        sourceState(phase)%p(sourceOffset)%dotState(1,constituent) + &
        plasticState(phase)%slipRate(index,constituent)/ &
-       ((damage(homog)%p(damageOffset))**source_damage_anisoDuctile_N(instance))/ & 
-       source_damage_anisoDuctile_critPlasticStrain(f,instance) 
+       ((damage(homog)%p(damageOffset))**param(instance)%N)/param(instance)%critPlasticStrain(index) 
      
      index = index + 1_pInt
    enddo
@@ -338,31 +250,26 @@ end subroutine source_damage_anisoDuctile_dotState
 !--------------------------------------------------------------------------------------------------
 !> @brief returns local part of nonlocal damage driving force
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_anisoDuctile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, ipc, ip,  el)
+subroutine source_damage_anisoDuctile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
+   phase, &
+   constituent
  real(pReal),  intent(in) :: &
    phi
  real(pReal),  intent(out) :: &
    localphiDot, &
    dLocalphiDot_dPhi
  integer(pInt) :: &
-   phase, constituent, sourceOffset
+   sourceOffset
 
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  sourceOffset = source_damage_anisoDuctile_offset(phase)
  
- localphiDot = 1.0_pReal - &
-               sourceState(phase)%p(sourceOffset)%state(1,constituent)* &
-               phi
+ localphiDot = 1.0_pReal &
+             - sourceState(phase)%p(sourceOffset)%state(1,constituent) * phi
  
  dLocalphiDot_dPhi = -sourceState(phase)%p(sourceOffset)%state(1,constituent)
  
@@ -371,33 +278,28 @@ end subroutine source_damage_anisoDuctile_getRateAndItsTangent
 !--------------------------------------------------------------------------------------------------
 !> @brief return array of local damage results
 !--------------------------------------------------------------------------------------------------
-function source_damage_anisoDuctile_postResults(ipc,ip,el)
+function source_damage_anisoDuctile_postResults(phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
- real(pReal), dimension(source_damage_anisoDuctile_sizePostResults( &
-                          source_damage_anisoDuctile_instance(phaseAt(ipc,ip,el)))) :: &
+   phase, &
+   constituent
+ real(pReal), dimension(sum(source_damage_anisoDuctile_sizePostResult(:, &
+                          source_damage_anisoDuctile_instance(phase)))) :: &
    source_damage_anisoDuctile_postResults
 
  integer(pInt) :: &
-   instance, phase, constituent, sourceOffset, o, c
+   instance, sourceOffset, o, c
    
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  instance = source_damage_anisoDuctile_instance(phase)
  sourceOffset = source_damage_anisoDuctile_offset(phase)
 
  c = 0_pInt
- source_damage_anisoDuctile_postResults = 0.0_pReal
 
- do o = 1_pInt,source_damage_anisoDuctile_Noutput(instance)
-    select case(source_damage_anisoDuctile_outputID(o,instance))
+ do o = 1_pInt,size(param(instance)%outputID)
+    select case(param(instance)%outputID(o))
       case (damage_drivingforce_ID)
         source_damage_anisoDuctile_postResults(c+1_pInt) = &
           sourceState(phase)%p(sourceOffset)%state(1,constituent)

src/source_damage_isoBrittle.f90

@@ -12,7 +12,6 @@ module source_damage_isoBrittle
  implicit none
  private
  integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   source_damage_isoBrittle_sizePostResults, &                                                        !< cumulative size of post results
    source_damage_isoBrittle_offset, &                                                                 !< which source is my current damage mechanism?
    source_damage_isoBrittle_instance                                                                  !< instance of damage source mechanism
 
@@ -22,21 +21,22 @@ module source_damage_isoBrittle
  character(len=64),                   dimension(:,:),         allocatable, target, public :: &
    source_damage_isoBrittle_output                                                                    !< name of each post result output
 
- integer(pInt),                       dimension(:),           allocatable, target, public :: &
-   source_damage_isoBrittle_Noutput                                                                   !< number of outputs per instance of this damage 
-
- real(pReal),                         dimension(:),     allocatable,         private :: &
-   source_damage_isoBrittle_aTol, &
-   source_damage_isoBrittle_N, &
-   source_damage_isoBrittle_critStrainEnergy
-
  enum, bind(c) 
    enumerator :: undefined_ID, &
                  damage_drivingforce_ID
  end enum                                                 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!11 ToDo
 
- integer(kind(undefined_ID)),         dimension(:,:),         allocatable,          private :: & 
-   source_damage_isoBrittle_outputID                                                                  !< ID of each post result output
+
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   real(pReal) :: &
+     critStrainEnergy, &
+     N, &
+     aTol
+   integer(kind(undefined_ID)), allocatable, dimension(:) :: &
+     outputID
+ end type tParameters
+
+ type(tParameters), dimension(:), allocatable, private :: param                                     !< containers of constitutive parameters (len Ninstance)
 
 
  public :: &
@@ -52,30 +52,22 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_isoBrittle_init(fileUnit)
+subroutine source_damage_isoBrittle_init
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
    compiler_options
 #endif
+ use prec, only: &
+   pStringLen
  use debug, only: &
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
-   IO_warning, &
-   IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_error
  use material, only: &
+   material_allocateSourceState, &
    phase_source, &
    phase_Nsources, &
    phase_Noutput, &
@@ -84,31 +76,31 @@ subroutine source_damage_isoBrittle_init(fileUnit)
    material_phase, &  
    sourceState
  use config, only: &
+   config_phase, &
    material_Nphase, &
    MATERIAL_partPhase
- use numerics,only: &
-   numerics_integrator
 
  implicit none
- integer(pInt), intent(in) :: fileUnit
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,mySize=0_pInt,phase,instance,source,sourceOffset,o
- integer(pInt) :: sizeState, sizeDotState, sizeDeltaState
- integer(pInt) :: NofMyPhase   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: Ninstance,phase,instance,source,sourceOffset
+ integer(pInt) :: NofMyPhase,p,i   
+ character(len=65536),   dimension(0), parameter :: emptyStringArray = [character(len=65536)::]
+ integer(kind(undefined_ID)) :: &
+   outputID
 
- write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_damage_isoBrittle_label//' init  -+>>>'
- write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
+ character(len=pStringLen) :: &
+   extmsg = ''
+ character(len=65536), dimension(:), allocatable :: &
+   outputs
+ 
+ write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_DAMAGE_ISOBRITTLE_LABEL//' init  -+>>>'
 #include "compilation_info.f90"
 
- maxNinstance = int(count(phase_source == SOURCE_damage_isoBrittle_ID),pInt)
- if (maxNinstance == 0_pInt) return
+ Ninstance = int(count(phase_source == SOURCE_damage_isoBrittle_ID),pInt)
+ if (Ninstance == 0_pInt) return
  
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
-   write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
+   write(6,'(a16,1x,i5,/)') '# instances:',Ninstance
  
  allocate(source_damage_isoBrittle_offset(material_Nphase), source=0_pInt)
  allocate(source_damage_isoBrittle_instance(material_Nphase), source=0_pInt)
@@ -120,121 +112,64 @@ subroutine source_damage_isoBrittle_init(fileUnit)
    enddo    
  enddo
    
- allocate(source_damage_isoBrittle_sizePostResults(maxNinstance),                     source=0_pInt)
- allocate(source_damage_isoBrittle_sizePostResult(maxval(phase_Noutput),maxNinstance),source=0_pInt)
- allocate(source_damage_isoBrittle_output(maxval(phase_Noutput),maxNinstance))
+ allocate(source_damage_isoBrittle_sizePostResult(maxval(phase_Noutput),Ninstance),source=0_pInt)
+ allocate(source_damage_isoBrittle_output(maxval(phase_Noutput),Ninstance))
           source_damage_isoBrittle_output = ''
- allocate(source_damage_isoBrittle_outputID(maxval(phase_Noutput),maxNinstance),      source=undefined_ID)
- allocate(source_damage_isoBrittle_Noutput(maxNinstance),                             source=0_pInt) 
- allocate(source_damage_isoBrittle_critStrainEnergy(maxNinstance),                    source=0.0_pReal) 
- allocate(source_damage_isoBrittle_N(maxNinstance),                                   source=1.0_pReal) 
- allocate(source_damage_isoBrittle_aTol(maxNinstance),                                source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ allocate(param(Ninstance))
  
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_source(:,phase) == SOURCE_damage_isoBrittle_ID)) then   ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = source_damage_isoBrittle_instance(phase)                                            ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                             ! extract key
-     select case(tag)
-       case ('(output)')
-         select case(IO_lc(IO_stringValue(line,chunkPos,2_pInt)))
-           case ('isobrittle_drivingforce')
-             source_damage_isoBrittle_Noutput(instance) = source_damage_isoBrittle_Noutput(instance) + 1_pInt
-             source_damage_isoBrittle_outputID(source_damage_isoBrittle_Noutput(instance),instance) = damage_drivingforce_ID
-             source_damage_isoBrittle_output(source_damage_isoBrittle_Noutput(instance),instance) = &
-                                                       IO_lc(IO_stringValue(line,chunkPos,2_pInt))
-          end select
+ do p=1, size(config_phase)
+   if (all(phase_source(:,p) /= SOURCE_DAMAGE_ISOBRITTLE_ID)) cycle
+   associate(prm => param(source_damage_isoBrittle_instance(p)), &
+             config => config_phase(p))
              
-       case ('isobrittle_criticalstrainenergy')
-         source_damage_isoBrittle_critStrainEnergy(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%aTol             = config%getFloat('isobrittle_atol',defaultVal = 1.0e-3_pReal)
    
-       case ('isobrittle_n')
-         source_damage_isoBrittle_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%N                = config%getFloat('isobrittle_n')
+   prm%critStrainEnergy = config%getFloat('isobrittle_criticalstrainenergy')
    
-       case ('isobrittle_atol')
-         source_damage_isoBrittle_aTol(instance) = IO_floatValue(line,chunkPos,2_pInt)
-
-     end select
-   endif; endif
- enddo parsingFile
+   ! sanity checks
+   if (prm%aTol                < 0.0_pReal) extmsg = trim(extmsg)//' isobrittle_atol'
    
+   if (prm%N                  <= 0.0_pReal) extmsg = trim(extmsg)//' isobrittle_n'
+   if (prm%critStrainEnergy   <= 0.0_pReal) extmsg = trim(extmsg)//' isobrittle_criticalstrainenergy'
    
 !--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, material_Nphase 
-   myPhase: if (any(phase_source(:,phase) == SOURCE_damage_isoBrittle_ID)) then
-     instance = source_damage_isoBrittle_instance(phase)
-     if (source_damage_isoBrittle_aTol(instance) < 0.0_pReal) &
-       source_damage_isoBrittle_aTol(instance) = 1.0e-3_pReal                                              ! default absolute tolerance 1e-3
-     if (source_damage_isoBrittle_critStrainEnergy(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='criticalStrainEnergy ('//SOURCE_damage_isoBrittle_LABEL//')')
-   endif myPhase
- enddo sanityChecks
+!  exit if any parameter is out of range
+   if (extmsg /= '') &
+     call IO_error(211_pInt,ext_msg=trim(extmsg)//'('//SOURCE_DAMAGE_ISOBRITTLE_LABEL//')')
+
+!--------------------------------------------------------------------------------------------------
+!  output pararameters
+   outputs = config%getStrings('(output)',defaultVal=emptyStringArray)
+   allocate(prm%outputID(0))
+   do i=1_pInt, size(outputs)
+     outputID = undefined_ID
+     select case(outputs(i))
+     
+       case ('isobrittle_drivingforce')
+         source_damage_isoBrittle_sizePostResult(i,source_damage_isoBrittle_instance(p)) = 1_pInt
+         source_damage_isoBrittle_output(i,source_damage_isoBrittle_instance(p)) = outputs(i)
+         prm%outputID = [prm%outputID, damage_drivingforce_ID]
+           
+     end select
+
+   enddo
+
+   end associate
+   
+  phase = p
   
- initializeInstances: do phase = 1_pInt, material_Nphase
-   if (any(phase_source(:,phase) == SOURCE_damage_isoBrittle_ID)) then
   NofMyPhase=count(material_phase==phase)
   instance = source_damage_isoBrittle_instance(phase)
   sourceOffset = source_damage_isoBrittle_offset(phase)
-!--------------------------------------------------------------------------------------------------
-!  Determine size of postResults array
-     outputsLoop: do o = 1_pInt,source_damage_isoBrittle_Noutput(instance)
-       select case(source_damage_isoBrittle_outputID(o,instance))
-         case(damage_drivingforce_ID)
-           mySize = 1_pInt
-       end select
      
-       if (mySize > 0_pInt) then  ! any meaningful output found
-          source_damage_isoBrittle_sizePostResult(o,instance) = mySize
-          source_damage_isoBrittle_sizePostResults(instance)  = source_damage_isoBrittle_sizePostResults(instance) + mySize
-       endif
-     enddo outputsLoop
-! Determine size of state array
-     sizeDotState              =   1_pInt
-     sizeDeltaState            =   1_pInt
-     sizeState                 =   1_pInt
+  call material_allocateSourceState(phase,sourceOffset,NofMyPhase,1_pInt,1_pInt,1_pInt)
+  sourceState(phase)%p(sourceOffset)%sizePostResults = sum(source_damage_isoBrittle_sizePostResult(:,instance))
+  sourceState(phase)%p(sourceOffset)%aTolState=param(instance)%aTol
  
-     sourceState(phase)%p(sourceOffset)%sizeState      = sizeState
-     sourceState(phase)%p(sourceOffset)%sizeDotState   = sizeDotState
-     sourceState(phase)%p(sourceOffset)%sizeDeltaState = sizeDeltaState
-     sourceState(phase)%p(sourceOffset)%sizePostResults = source_damage_isoBrittle_sizePostResults(instance)
-     allocate(sourceState(phase)%p(sourceOffset)%aTolState           (sizeState),                &
-              source=source_damage_isoBrittle_aTol(instance))
-     allocate(sourceState(phase)%p(sourceOffset)%state0              (sizeState,NofMyPhase),     source=.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%partionedState0     (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%subState0           (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%state               (sizeState,NofMyPhase),     source=0.0_pReal)
+ enddo
  
-     allocate(sourceState(phase)%p(sourceOffset)%dotState            (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%deltaState        (sizeDeltaState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 1_pInt)) then
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState  (sizeDotState,NofMyPhase),  source=0.0_pReal)
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState2 (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     endif
-     if (any(numerics_integrator == 4_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RK4dotState       (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 5_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RKCK45dotState    (6,sizeDotState,NofMyPhase),source=0.0_pReal)
-
-   endif
- 
- enddo initializeInstances
 end subroutine source_damage_isoBrittle_init
 
 !--------------------------------------------------------------------------------------------------
@@ -243,15 +178,11 @@ end subroutine source_damage_isoBrittle_init
 subroutine source_damage_isoBrittle_deltaState(C, Fe, ipc, ip, el)
  use material, only: &
    phaseAt, phasememberAt, &
-   sourceState, &
-   material_homog, &
-   phase_NstiffnessDegradations, &
-   phase_stiffnessDegradation
+   sourceState
  use math, only : &
+   math_sym33to6, &
    math_mul33x33, &
    math_mul66x6, &
-   math_Mandel33to6, &
-   math_transpose33, &
    math_I3
 
  implicit none
@@ -264,10 +195,9 @@ subroutine source_damage_isoBrittle_deltaState(C, Fe, ipc, ip, el)
  real(pReal),  intent(in), dimension(6,6) :: &
    C
  integer(pInt) :: &
-   phase, constituent, instance, sourceOffset, mech
+   phase, constituent, instance, sourceOffset
  real(pReal) :: &
    strain(6), &
-   stiffness(6,6), &
    strainenergy
 
  phase = phaseAt(ipc,ip,el)                                                            !< phase ID at ipc,ip,el
@@ -276,11 +206,11 @@ subroutine source_damage_isoBrittle_deltaState(C, Fe, ipc, ip, el)
  instance = source_damage_isoBrittle_instance(phase)                                                 !< instance of damage_isoBrittle source
  sourceOffset = source_damage_isoBrittle_offset(phase)
 
- stiffness = C                                            
- strain = 0.5_pReal*math_Mandel33to6(math_mul33x33(math_transpose33(Fe),Fe)-math_I3)
                                    
- strainenergy = 2.0_pReal*sum(strain*math_mul66x6(stiffness,strain))/ &
-                source_damage_isoBrittle_critStrainEnergy(instance) 
+ strain = 0.5_pReal*math_sym33to6(math_mul33x33(transpose(Fe),Fe)-math_I3)
+
+ strainenergy = 2.0_pReal*sum(strain*math_mul66x6(C,strain))/param(instance)%critStrainEnergy
+ 
  if (strainenergy > sourceState(phase)%p(sourceOffset)%subState0(1,constituent)) then
    sourceState(phase)%p(sourceOffset)%deltaState(1,constituent) = &
      strainenergy - sourceState(phase)%p(sourceOffset)%state(1,constituent)
@@ -295,33 +225,29 @@ end subroutine source_damage_isoBrittle_deltaState
 !--------------------------------------------------------------------------------------------------
 !> @brief returns local part of nonlocal damage driving force
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_isoBrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, ipc, ip, el)
+subroutine source_damage_isoBrittle_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
+   phase, &
+   constituent
  real(pReal),  intent(in) :: &
    phi
  real(pReal),  intent(out) :: &
    localphiDot, &
    dLocalphiDot_dPhi
  integer(pInt) :: &
-   phase, constituent, instance, sourceOffset
+   instance, sourceOffset
 
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  instance = source_damage_isoBrittle_instance(phase)
  sourceOffset = source_damage_isoBrittle_offset(phase)
  
- localphiDot = (1.0_pReal - phi)**(source_damage_isoBrittle_N(instance) - 1.0_pReal) - &
+ localphiDot = (1.0_pReal - phi)**(param(instance)%N - 1.0_pReal) - &
                phi*sourceState(phase)%p(sourceOffset)%state(1,constituent)
- dLocalphiDot_dPhi = - (source_damage_isoBrittle_N(instance) - 1.0_pReal)* &
-                       (1.0_pReal - phi)**max(0.0_pReal,source_damage_isoBrittle_N(instance) - 2.0_pReal) &
+ dLocalphiDot_dPhi = - (param(instance)%N - 1.0_pReal)* &
+                       (1.0_pReal - phi)**max(0.0_pReal,param(instance)%N - 2.0_pReal) &
                      - sourceState(phase)%p(sourceOffset)%state(1,constituent)
  
 end subroutine source_damage_isoBrittle_getRateAndItsTangent
@@ -329,33 +255,28 @@ end subroutine source_damage_isoBrittle_getRateAndItsTangent
 !--------------------------------------------------------------------------------------------------
 !> @brief return array of local damage results
 !--------------------------------------------------------------------------------------------------
-function source_damage_isoBrittle_postResults(ipc,ip,el)
+function source_damage_isoBrittle_postResults(phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
- real(pReal), dimension(source_damage_isoBrittle_sizePostResults( &
-                         source_damage_isoBrittle_instance(phaseAt(ipc,ip,el)))) :: &
+   phase, &
+   constituent
+ real(pReal), dimension(sum(source_damage_isoBrittle_sizePostResult(:, &
+                         source_damage_isoBrittle_instance(phase)))) :: &
    source_damage_isoBrittle_postResults
 
  integer(pInt) :: &
-   instance, phase, constituent, sourceOffset, o, c
+   instance, sourceOffset, o, c
    
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  instance = source_damage_isoBrittle_instance(phase)
  sourceOffset = source_damage_isoBrittle_offset(phase)
 
  c = 0_pInt
- source_damage_isoBrittle_postResults = 0.0_pReal
 
- do o = 1_pInt,source_damage_isoBrittle_Noutput(instance)
-    select case(source_damage_isoBrittle_outputID(o,instance))
+ do o = 1_pInt,size(param(instance)%outputID)
+    select case(param(instance)%outputID(o))
       case (damage_drivingforce_ID)
         source_damage_isoBrittle_postResults(c+1_pInt) = sourceState(phase)%p(sourceOffset)%state(1,constituent)
         c = c + 1

src/source_damage_isoDuctile.f90

@@ -12,7 +12,6 @@ module source_damage_isoDuctile
  implicit none
  private
  integer(pInt),                       dimension(:),           allocatable,         public, protected :: &
-   source_damage_isoDuctile_sizePostResults, &                                                        !< cumulative size of post results
    source_damage_isoDuctile_offset, &                                                                 !< which source is my current damage mechanism?
    source_damage_isoDuctile_instance                                                                  !< instance of damage source mechanism
 
@@ -22,21 +21,22 @@ module source_damage_isoDuctile
  character(len=64),                   dimension(:,:),         allocatable, target, public :: &
    source_damage_isoDuctile_output                                                                    !< name of each post result output
 
- integer(pInt),                       dimension(:),           allocatable, target, public :: &
-   source_damage_isoDuctile_Noutput                                                                   !< number of outputs per instance of this damage 
-
- real(pReal),                         dimension(:),     allocatable,         private :: &
-   source_damage_isoDuctile_aTol, &
-   source_damage_isoDuctile_critPlasticStrain, &
-   source_damage_isoDuctile_N
 
  enum, bind(c) 
    enumerator :: undefined_ID, &
                  damage_drivingforce_ID
  end enum                                                 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!11 ToDo
 
- integer(kind(undefined_ID)),         dimension(:,:),         allocatable,          private :: & 
-   source_damage_isoDuctile_outputID                                                                  !< ID of each post result output
+ type, private :: tParameters                                                                       !< container type for internal constitutive parameters
+   real(pReal) :: &
+     critPlasticStrain, &
+     N, &
+     aTol
+   integer(kind(undefined_ID)), allocatable, dimension(:) :: &
+     outputID
+ end type tParameters
+
+ type(tParameters), dimension(:), allocatable, private :: param                                     !< containers of constitutive parameters (len Ninstance)
 
 
  public :: &
@@ -52,30 +52,23 @@ contains
 !> @brief module initialization
 !> @details reads in material parameters, allocates arrays, and does sanity checks
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_isoDuctile_init(fileUnit)
+subroutine source_damage_isoDuctile_init
 #if defined(__GFORTRAN__) || __INTEL_COMPILER >= 1800
  use, intrinsic :: iso_fortran_env, only: &
    compiler_version, &
    compiler_options
 #endif
+ use prec, only: &
+   pStringLen
  use debug, only: &
    debug_level,&
    debug_constitutive,&
    debug_levelBasic
  use IO, only: &
-   IO_read, &
-   IO_lc, &
-   IO_getTag, &
-   IO_isBlank, &
-   IO_stringPos, &
-   IO_stringValue, &
-   IO_floatValue, &
-   IO_intValue, &
    IO_warning, &
-   IO_error, &
-   IO_timeStamp, &
-   IO_EOF
+   IO_error
  use material, only: &
+   material_allocateSourceState, &
    phase_source, &
    phase_Nsources, &
    phase_Noutput, &
@@ -84,32 +77,31 @@ subroutine source_damage_isoDuctile_init(fileUnit)
    material_phase, &  
    sourceState
  use config, only: &
+   config_phase, &
    material_Nphase, &
    MATERIAL_partPhase
 
- use numerics,only: &
-   numerics_integrator
-
  implicit none
- integer(pInt), intent(in) :: fileUnit
 
- integer(pInt), allocatable, dimension(:) :: chunkPos
- integer(pInt) :: maxNinstance,mySize=0_pInt,phase,instance,source,sourceOffset,o
- integer(pInt) :: sizeState, sizeDotState, sizeDeltaState
- integer(pInt) :: NofMyPhase   
- character(len=65536) :: &
-   tag  = '', &
-   line = ''
+ integer(pInt) :: Ninstance,phase,instance,source,sourceOffset
+ integer(pInt) :: NofMyPhase,p,i
+ character(len=65536),   dimension(0), parameter :: emptyStringArray = [character(len=65536)::]
+ integer(kind(undefined_ID)) :: &
+   outputID
 
- write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_damage_isoDuctile_label//' init  -+>>>'
- write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
+ character(len=pStringLen) :: &
+   extmsg = ''
+ character(len=65536), dimension(:), allocatable :: &
+   outputs
+
+ write(6,'(/,a)')   ' <<<+-  source_'//SOURCE_DAMAGE_ISODUCTILE_LABEL//' init  -+>>>'
 #include "compilation_info.f90"
 
- maxNinstance = int(count(phase_source == SOURCE_damage_isoDuctile_ID),pInt)
- if (maxNinstance == 0_pInt) return
+ Ninstance = int(count(phase_source == SOURCE_damage_isoDuctile_ID),pInt)
+ if (Ninstance == 0_pInt) return
  
  if (iand(debug_level(debug_constitutive),debug_levelBasic) /= 0_pInt) &
-   write(6,'(a16,1x,i5,/)') '# instances:',maxNinstance
+   write(6,'(a16,1x,i5,/)') '# instances:',Ninstance
  
  allocate(source_damage_isoDuctile_offset(material_Nphase), source=0_pInt)
  allocate(source_damage_isoDuctile_instance(material_Nphase), source=0_pInt)
@@ -121,121 +113,64 @@ subroutine source_damage_isoDuctile_init(fileUnit)
    enddo    
  enddo
    
- allocate(source_damage_isoDuctile_sizePostResults(maxNinstance),                     source=0_pInt)
- allocate(source_damage_isoDuctile_sizePostResult(maxval(phase_Noutput),maxNinstance),source=0_pInt)
- allocate(source_damage_isoDuctile_output(maxval(phase_Noutput),maxNinstance))
+ allocate(source_damage_isoDuctile_sizePostResult(maxval(phase_Noutput),Ninstance),source=0_pInt)
+ allocate(source_damage_isoDuctile_output(maxval(phase_Noutput),Ninstance))
           source_damage_isoDuctile_output = ''
- allocate(source_damage_isoDuctile_outputID(maxval(phase_Noutput),maxNinstance),      source=undefined_ID)
- allocate(source_damage_isoDuctile_Noutput(maxNinstance),                             source=0_pInt) 
- allocate(source_damage_isoDuctile_critPlasticStrain(maxNinstance),                     source=0.0_pReal) 
- allocate(source_damage_isoDuctile_N(maxNinstance),                                     source=0.0_pReal) 
- allocate(source_damage_isoDuctile_aTol(maxNinstance),                                source=0.0_pReal) 
 
- rewind(fileUnit)
- phase = 0_pInt
- do while (trim(line) /= IO_EOF .and. IO_lc(IO_getTag(line,'<','>')) /= MATERIAL_partPhase)         ! wind forward to <phase>
-   line = IO_read(fileUnit)
- enddo
+ allocate(param(Ninstance))
  
- parsingFile: do while (trim(line) /= IO_EOF)                                                       ! read through sections of phase part
-   line = IO_read(fileUnit)
-   if (IO_isBlank(line)) cycle                                                                      ! skip empty lines
-   if (IO_getTag(line,'<','>') /= '') then                                                          ! stop at next part
-     line = IO_read(fileUnit, .true.)                                                               ! reset IO_read
-     exit                                                                                           
-   endif   
-   if (IO_getTag(line,'[',']') /= '') then                                                          ! next phase section
-     phase = phase + 1_pInt                                                                         ! advance phase section counter
-     cycle                                                                                          ! skip to next line
-   endif
-   if (phase > 0_pInt ) then; if (any(phase_source(:,phase) == SOURCE_damage_isoDuctile_ID)) then   ! do not short-circuit here (.and. with next if statemen). It's not safe in Fortran
-     instance = source_damage_isoDuctile_instance(phase)                                            ! which instance of my damage is present phase
-     chunkPos = IO_stringPos(line)
-     tag = IO_lc(IO_stringValue(line,chunkPos,1_pInt))                                             ! extract key
-     select case(tag)
-       case ('(output)')
-         select case(IO_lc(IO_stringValue(line,chunkPos,2_pInt)))
-           case ('isoductile_drivingforce')
-             source_damage_isoDuctile_Noutput(instance) = source_damage_isoDuctile_Noutput(instance) + 1_pInt
-             source_damage_isoDuctile_outputID(source_damage_isoDuctile_Noutput(instance),instance) = damage_drivingforce_ID
-             source_damage_isoDuctile_output(source_damage_isoDuctile_Noutput(instance),instance) = &
-                                                       IO_lc(IO_stringValue(line,chunkPos,2_pInt))
-          end select
+ do p=1, size(config_phase)
+   if (all(phase_source(:,p) /= SOURCE_DAMAGE_ISODUCTILE_ID)) cycle
+   associate(prm => param(source_damage_isoDuctile_instance(p)), &
+             config => config_phase(p))
              
-       case ('isoductile_criticalplasticstrain')
-         source_damage_isoDuctile_critPlasticStrain(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%aTol              = config%getFloat('isoductile_atol',defaultVal = 1.0e-3_pReal)
 
-       case ('isoductile_ratesensitivity')
-         source_damage_isoDuctile_N(instance) = IO_floatValue(line,chunkPos,2_pInt)
+   prm%N                 = config%getFloat('isoductile_ratesensitivity')
+   prm%critPlasticStrain = config%getFloat('isoductile_criticalplasticstrain')
    
-       case ('isoductile_atol')
-         source_damage_isoDuctile_aTol(instance) = IO_floatValue(line,chunkPos,2_pInt)
-
-     end select
-   endif; endif
- enddo parsingFile
+   ! sanity checks
+   if (prm%aTol                 < 0.0_pReal) extmsg = trim(extmsg)//' isoductile_atol'
    
+   if (prm%N                   <= 0.0_pReal) extmsg = trim(extmsg)//' isoductile_ratesensitivity'
+   if (prm%critPlasticStrain   <= 0.0_pReal) extmsg = trim(extmsg)//' isoductile_criticalplasticstrain'
    
 !--------------------------------------------------------------------------------------------------
-!  sanity checks
- sanityChecks: do phase = 1_pInt, material_Nphase 
-   myPhase: if (any(phase_source(:,phase) == SOURCE_damage_isoDuctile_ID)) then
-     instance = source_damage_isoDuctile_instance(phase)
-     if (source_damage_isoDuctile_aTol(instance) < 0.0_pReal) &
-       source_damage_isoDuctile_aTol(instance) = 1.0e-3_pReal                                              ! default absolute tolerance 1e-3
-     if (source_damage_isoDuctile_critPlasticStrain(instance) <= 0.0_pReal) &
-       call IO_error(211_pInt,el=instance,ext_msg='critical plastic strain ('//SOURCE_damage_isoDuctile_LABEL//')')
-   endif myPhase
- enddo sanityChecks
+!  exit if any parameter is out of range
+   if (extmsg /= '') &
+     call IO_error(211_pInt,ext_msg=trim(extmsg)//'('//SOURCE_DAMAGE_ISODUCTILE_LABEL//')')
 
- initializeInstances: do phase = 1_pInt, material_Nphase
-   if (any(phase_source(:,phase) == SOURCE_damage_isoDuctile_ID)) then
+!--------------------------------------------------------------------------------------------------
+!  output pararameters
+   outputs = config%getStrings('(output)',defaultVal=emptyStringArray)
+   allocate(prm%outputID(0))
+   do i=1_pInt, size(outputs)
+     outputID = undefined_ID
+     select case(outputs(i))
+     
+       case ('isoductile_drivingforce')
+         source_damage_isoDuctile_sizePostResult(i,source_damage_isoDuctile_instance(p)) = 1_pInt
+         source_damage_isoDuctile_output(i,source_damage_isoDuctile_instance(p)) = outputs(i)
+         prm%outputID = [prm%outputID, damage_drivingforce_ID]
+
+     end select
+
+   enddo
+
+   end associate
+   
+   phase = p
    NofMyPhase=count(material_phase==phase)
    instance = source_damage_isoDuctile_instance(phase)
    sourceOffset = source_damage_isoDuctile_offset(phase)
-!--------------------------------------------------------------------------------------------------
-!  Determine size of postResults array
-     outputsLoop: do o = 1_pInt,source_damage_isoDuctile_Noutput(instance)
-       select case(source_damage_isoDuctile_outputID(o,instance))
-         case(damage_drivingforce_ID)
-           mySize = 1_pInt
-       end select
 
-       if (mySize > 0_pInt) then  ! any meaningful output found
-          source_damage_isoDuctile_sizePostResult(o,instance) = mySize
-          source_damage_isoDuctile_sizePostResults(instance)  = source_damage_isoDuctile_sizePostResults(instance) + mySize
-       endif
-     enddo outputsLoop
-! Determine size of state array
-     sizeDotState              =   1_pInt
-     sizeDeltaState            =   0_pInt
-     sizeState                 =   1_pInt
+   call material_allocateSourceState(phase,sourceOffset,NofMyPhase,1_pInt,1_pInt,0_pInt)
+   sourceState(phase)%p(sourceOffset)%sizePostResults = sum(source_damage_isoDuctile_sizePostResult(:,instance))
+   sourceState(phase)%p(sourceOffset)%aTolState=param(instance)%aTol
               
-     sourceState(phase)%p(sourceOffset)%sizeState      = sizeState
-     sourceState(phase)%p(sourceOffset)%sizeDotState   = sizeDotState
-     sourceState(phase)%p(sourceOffset)%sizeDeltaState = sizeDeltaState
-     sourceState(phase)%p(sourceOffset)%sizePostResults = source_damage_isoDuctile_sizePostResults(instance)
-     allocate(sourceState(phase)%p(sourceOffset)%aTolState           (sizeState),                &
-              source=source_damage_isoDuctile_aTol(instance))
-     allocate(sourceState(phase)%p(sourceOffset)%state0              (sizeState,NofMyPhase),     source=.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%partionedState0     (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%subState0           (sizeState,NofMyPhase),     source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%state               (sizeState,NofMyPhase),     source=0.0_pReal)
  
-     allocate(sourceState(phase)%p(sourceOffset)%dotState            (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     allocate(sourceState(phase)%p(sourceOffset)%deltaState        (sizeDeltaState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 1_pInt)) then
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState  (sizeDotState,NofMyPhase),  source=0.0_pReal)
-       allocate(sourceState(phase)%p(sourceOffset)%previousDotState2 (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     endif
-     if (any(numerics_integrator == 4_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RK4dotState       (sizeDotState,NofMyPhase),  source=0.0_pReal)
-     if (any(numerics_integrator == 5_pInt)) &
-       allocate(sourceState(phase)%p(sourceOffset)%RKCK45dotState    (6,sizeDotState,NofMyPhase),source=0.0_pReal)
+ enddo
  
-   endif
- 
- enddo initializeInstances
 end subroutine source_damage_isoDuctile_init
 
 !--------------------------------------------------------------------------------------------------
@@ -267,39 +202,34 @@ subroutine source_damage_isoDuctile_dotState(ipc, ip, el)
 
  sourceState(phase)%p(sourceOffset)%dotState(1,constituent) = &
    sum(plasticState(phase)%slipRate(:,constituent))/ &
-   ((damage(homog)%p(damageOffset))**source_damage_isoDuctile_N(instance))/ & 
-   source_damage_isoDuctile_critPlasticStrain(instance) 
+   ((damage(homog)%p(damageOffset))**param(instance)%N)/ & 
+   param(instance)%critPlasticStrain 
 
 end subroutine source_damage_isoDuctile_dotState
  
 !--------------------------------------------------------------------------------------------------
 !> @brief returns local part of nonlocal damage driving force
 !--------------------------------------------------------------------------------------------------
-subroutine source_damage_isoDuctile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, ipc, ip, el)
+subroutine source_damage_isoDuctile_getRateAndItsTangent(localphiDot, dLocalphiDot_dPhi, phi, phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
+   phase, &
+   constituent
  real(pReal),  intent(in) :: &
    phi
  real(pReal),  intent(out) :: &
    localphiDot, &
    dLocalphiDot_dPhi
  integer(pInt) :: &
-   phase, constituent, sourceOffset
+   sourceOffset
 
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  sourceOffset = source_damage_isoDuctile_offset(phase)
  
- localphiDot = 1.0_pReal - &
-               sourceState(phase)%p(sourceOffset)%state(1,constituent)* &
-               phi
+ localphiDot = 1.0_pReal &
+             - sourceState(phase)%p(sourceOffset)%state(1,constituent) * phi
  
  dLocalphiDot_dPhi = -sourceState(phase)%p(sourceOffset)%state(1,constituent)
  
@@ -308,33 +238,28 @@ end subroutine source_damage_isoDuctile_getRateAndItsTangent
 !--------------------------------------------------------------------------------------------------
 !> @brief return array of local damage results
 !--------------------------------------------------------------------------------------------------
-function source_damage_isoDuctile_postResults(ipc,ip,el)
+function source_damage_isoDuctile_postResults(phase, constituent)
  use material, only: &
-   phaseAt, phasememberAt, &
    sourceState
 
  implicit none
  integer(pInt), intent(in) :: &
-   ipc, &                                                                                           !< component-ID of integration point
-   ip, &                                                                                            !< integration point
-   el                                                                                               !< element
- real(pReal), dimension(source_damage_isoDuctile_sizePostResults( &
-                          source_damage_isoDuctile_instance(phaseAt(ipc,ip,el)))) :: &
+   phase, &
+   constituent
+ real(pReal), dimension(sum(source_damage_isoDuctile_sizePostResult(:, &
+                          source_damage_isoDuctile_instance(phase)))) :: &
    source_damage_isoDuctile_postResults
 
  integer(pInt) :: &
-   instance, phase, constituent, sourceOffset, o, c
+   instance, sourceOffset, o, c
    
- phase = phaseAt(ipc,ip,el)
- constituent = phasememberAt(ipc,ip,el)
  instance = source_damage_isoDuctile_instance(phase)
  sourceOffset = source_damage_isoDuctile_offset(phase)
 
  c = 0_pInt
- source_damage_isoDuctile_postResults = 0.0_pReal
 
- do o = 1_pInt,source_damage_isoDuctile_Noutput(instance)
-    select case(source_damage_isoDuctile_outputID(o,instance))
+ do o = 1_pInt,size(param(instance)%outputID)
+    select case(param(instance)%outputID(o))
       case (damage_drivingforce_ID)
         source_damage_isoDuctile_postResults(c+1_pInt) = sourceState(phase)%p(sourceOffset)%state(1,constituent)
         c = c + 1

src/system_routines.f90

@@ -3,11 +3,17 @@
 !> @brief    provides wrappers to C routines
 !--------------------------------------------------------------------------------------------------
 module system_routines
+ use, intrinsic :: ISO_C_Binding, only: &
+   C_INT, &
+   C_CHAR, &
+   C_NULL_CHAR
 
  implicit none
  private
  
  public :: &
+   signalusr1_C, &
+   signalusr2_C, &
    isDirectory, &
    getCWD, &
    getHostName, &
@@ -47,8 +53,19 @@ interface
    character(kind=C_CHAR), dimension(1024), intent(in) :: path                                      ! C string is an array
  end function chdir_C
  
-end interface
+ subroutine signalusr1_C(handler) bind(C)
+   use, intrinsic :: ISO_C_Binding, only: &
+     C_FUNPTR
+   type(C_FUNPTR), intent(in), value :: handler
+ end subroutine signalusr1_C
  
+  subroutine signalusr2_C(handler) bind(C)
+   use, intrinsic :: ISO_C_Binding, only: &
+     C_FUNPTR
+   type(C_FUNPTR), intent(in), value :: handler
+ end subroutine signalusr2_C
+
+end interface
 
 contains
 
@@ -56,14 +73,10 @@ contains
 !> @brief figures out if a given path is a directory (and not an ordinary file)
 !--------------------------------------------------------------------------------------------------
 logical function isDirectory(path)
-  use, intrinsic :: ISO_C_Binding, only: &
-    C_INT, &
-    C_CHAR, &
-    C_NULL_CHAR
 
  implicit none
  character(len=*), intent(in) :: path
-  character(kind=C_CHAR), dimension(1024) :: strFixedLength
+ character(kind=C_CHAR), dimension(1024) :: strFixedLength                                         ! C string as array
  integer :: i 
 
  strFixedLength = repeat(C_NULL_CHAR,len(strFixedLength))
@@ -79,10 +92,6 @@ end function isDirectory
 !> @brief gets the current working directory
 !--------------------------------------------------------------------------------------------------
 character(len=1024) function getCWD()
-  use, intrinsic :: ISO_C_Binding, only: &
-    C_INT, &
-    C_CHAR, &
-    C_NULL_CHAR
 
  implicit none
  character(kind=C_CHAR), dimension(1024) :: charArray                                               ! C string is an array
@@ -110,11 +119,6 @@ end function getCWD
 !> @brief gets the current host name
 !--------------------------------------------------------------------------------------------------
 character(len=1024) function getHostName()
-  use, intrinsic :: ISO_C_Binding, only: &
-    C_INT, &
-    C_CHAR, &
-    C_NULL_CHAR
-
  implicit none
  character(kind=C_CHAR), dimension(1024) :: charArray                                              ! C string is an array
  integer(C_INT) :: stat
@@ -136,15 +140,11 @@ character(len=1024) function getHostName()
 
 end function getHostName
 
+
 !--------------------------------------------------------------------------------------------------
 !> @brief changes the current working directory
 !--------------------------------------------------------------------------------------------------
 logical function setCWD(path)
-  use, intrinsic :: ISO_C_Binding, only: &
-    C_INT, &
-    C_CHAR, &
-    C_NULL_CHAR
-
  implicit none
  character(len=*), intent(in) :: path
  character(kind=C_CHAR), dimension(1024) :: strFixedLength                                          ! C string is an array