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DAMASK_EICMD
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simplified

This commit is contained in:
Martin Diehl 2021-03-31 12:05:51 +02:00
parent e9c65dee73
commit 8c7ee5e796
1 changed files with 16 additions and 13 deletions
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29
python/damask/_result.py
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@ -24,6 +24,12 @@ from . import util
h5py3 = h5py.__version__[0] == '3'
def _read(handle,path):
metadata = {k:(v if h5py3 else v.decode()) for k,v in handle[path].attrs.items()}
dtype = np.dtype(handle[path].dtype,metadata=metadata)
return np.array(handle[path],dtype=dtype)
class Result:
"""
Manipulate and read DADF5 files.
@ -1322,21 +1328,23 @@ class Result:
labels_ = set([labels] if isinstance(labels,str) else labels)
with h5py.File(self.fname,'r') as f:
for inc in util.show_progress(self.visible['increments']):
r[inc] = {'phase':{},'homogenization':{}}
r[inc] = {'phase':{},'homogenization':{},'geometry':{}}
for la in labels_.intersection(f[os.path.join(inc,'geometry')].keys()):
r[inc]['geometry'][la] = _read(f,os.path.join(inc,'geometry',la))
for ph in self.visible['phases']:
r[inc]['phase'][ph] = {}
for me in f[os.path.join(inc,'phase',ph)].keys():
r[inc]['phase'][ph][me] = {}
for la in labels_.intersection(f[os.path.join(inc,'phase',ph,me)].keys()):
r[inc]['phase'][ph][me][la] = \
f[os.path.join(inc,'phase',ph,me,la)][()]
_read(f,os.path.join(inc,'phase',ph,me,la))
for ho in self.visible['homogenizations']:
r[inc]['homogenization'][ho] = {}
for me in f[os.path.join(inc,'homogenization',ho)].keys():
r[inc]['homogenization'][ho][me] = {}
for la in labels_.intersection(f[os.path.join(inc,'homogenization',ho,me)].keys()):
r[inc]['homogenization'][ho][me][la] = \
f[os.path.join(inc,'homogenization',ho,me,la)][()]
_read(f,os.path.join(inc,'homogenization',ho,me,la))
if strip: r = util.dict_strip(r)
if compress: r = util.dict_compress(r)
@ -1372,22 +1380,17 @@ class Result:
c = 0
for inc in util.show_progress(self.visible['increments']):
r[inc] = {'phase':{},'homogenization':{}}
r[inc] = {'phase':{},'homogenization':{},'geometry':{}}
for la in labels_.intersection(f[os.path.join(inc,'geometry')].keys()):
r[inc]['geometry'][la] = _read(f,os.path.join(inc,'geometry',la))
for ph in self.visible['phases']:
for me in f[os.path.join(inc,'phase',ph)].keys():
if me not in r[inc]['phase'].keys(): r[inc]['phase'][me] = {}
for la in labels_.intersection(f[os.path.join(inc,'phase',ph,me)].keys()):
data = ma.array(f[os.path.join(inc,'phase',ph,me,la)])
unit = f[os.path.join(inc,'phase',ph,me,la)].attrs['unit']
description = f[os.path.join(inc,'phase',ph,me,la)].attrs['description']
if not h5py3:
description = description.decode()
unit = unit.decode()
data = ma.array(_read(f,os.path.join(inc,'phase',ph,me,la)))
if la not in r[inc]['phase'][me].keys():
dt = np.dtype(data.dtype,metadata={'description':description, 'unit':unit})
container = np.empty((N_cells,)+data.shape[1:],dtype=dt)
container = np.empty((N_cells,)+data.shape[1:],dtype=data.dtype)
r[inc]['phase'][me][la] = ma.array(container,fill_value=fill_value,mask=True)
r[inc]['phase'][me][la][at_cell_ph[c][ph]] = data[in_data_ph[c][ph]]