reset the attribute manager to default
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@ -63,25 +63,39 @@ def _empty_like(dataset: np.ma.core.MaskedArray,
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mask = True)
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mask = True)
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class AttributeManagerNullterm(h5py.AttributeManager):
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class AttributeManagerNullterm(h5py.AttributeManager):
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"""
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"""
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Attribute management for DREAM.3D hdf5 files.
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Attribute management for DREAM.3D hdf5 files.
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String attribute values are stored as fixed-length string with NULLTERM
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String attribute values are stored as fixed-length string with NULLTERM
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References
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References
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----------
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----------
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https://stackoverflow.com/questions/38267076
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https://stackoverflow.com/questions/38267076
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https://stackoverflow.com/questions/52750232
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https://stackoverflow.com/questions/52750232
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"""
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"""
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def create(self, name, data, shape=None, dtype=None):
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def create(self, name, data, shape=None, dtype=None):
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if isinstance(data,str):
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if isinstance(data,str):
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tid = h5py.h5t.C_S1.copy()
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tid = h5py.h5t.C_S1.copy()
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tid.set_size(len(data + ' '))
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tid.set_size(len(data + ' '))
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super().create(name=name,data=data+' ',dtype = h5py.Datatype(tid))
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super().create(name=name,data=data+' ',dtype = h5py.Datatype(tid))
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else:
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else:
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super().create(name=name,data=data,shape=shape,dtype=dtype)
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super().create(name=name,data=data,shape=shape,dtype=dtype)
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class ResetAttributeManager(h5py.AttributeManager):
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"""
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Reset the attribute management for DREAM.3D hdf5 files.
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References
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----------
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https://stackoverflow.com/questions/38267076
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https://stackoverflow.com/questions/52750232
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"""
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def create(self, name, data, shape=None, dtype=None):
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super().create(name=name,data=data,shape=shape,dtype=dtype)
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class Result:
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class Result:
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@ -2076,6 +2090,9 @@ class Result:
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o[geom_label].attrs['SpatialDimensionality'] = np.array([3],np.uint32)
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o[geom_label].attrs['SpatialDimensionality'] = np.array([3],np.uint32)
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o[geom_label].attrs['UnitDimensionality'] = np.array([3],np.uint32)
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o[geom_label].attrs['UnitDimensionality'] = np.array([3],np.uint32)
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h5py._hl.attrs.AttributeManager = ResetAttributeManager # Reset the attribute manager to original
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def export_DADF5(self,
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def export_DADF5(self,
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fname,
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fname,
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output: Union[str, List[str]] = '*',
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output: Union[str, List[str]] = '*',
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