adjusting to new data layout

processing/pre/geom_fromVoronoiTessellation.py

@@ -224,7 +224,7 @@ for name in filenames:
 
     header = [scriptID + ' ' + ' '.join(sys.argv[1:])]\
            + config_header
-    geom = damask.Geom(indices.reshape(grid),size,origin,
+    geom = damask.Geom(indices.reshape(grid,order='F'),size,origin,
                        homogenization=options.homogenization,comments=header)
     damask.util.croak(geom)
 

processing/pre/seeds_fromGeom.py

@@ -45,7 +45,7 @@ options.blacklist = [int(i) for i in options.blacklist]
 
 for name in filenames:
     damask.util.report(scriptName,name)
-    
+
     geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
     microstructure = geom.get_microstructure().reshape((-1,1),order='F')
 
@@ -53,9 +53,9 @@ for name in filenames:
                           np.full(geom.grid.prod(),True,dtype=bool),
                           np.in1d(microstructure,options.blacklist,invert=True)  if options.blacklist else \
                           np.full(geom.grid.prod(),True,dtype=bool))
-   
-    seeds = damask.grid_filters.cell_coord0(geom.grid,geom.size).reshape(-1,3)
-    
+
+    seeds = damask.grid_filters.cell_coord0(geom.grid,geom.size).reshape(-1,3,order='F')
+
     comments = geom.comments \
              + [scriptID + ' ' + ' '.join(sys.argv[1:]),
                 'grid\ta {}\tb {}\tc {}'.format(*geom.grid),

processing/pre/seeds_fromRandom.py

@@ -128,7 +128,7 @@ for name in filenames:
 
 
     if not options.selective:
-        coords = damask.grid_filters.cell_coord0(grid,size).reshape(-1,3)
+        coords = damask.grid_filters.cell_coord0(grid,size).reshape(-1,3,order='F')
         seeds = coords[np.random.choice(np.prod(grid), options.N, replace=False)] \
               + np.broadcast_to(size/grid,(options.N,3))*(np.random.rand(options.N,3)*.5-.25)       # wobble without leaving grid
     else: