Merge remote-tracking branch 'origin/cleaning' into misc-improvements

processing/legacy/addDisplacement.py

@@ -1,71 +0,0 @@
-#!/usr/bin/env python3
-
-import os
-import sys
-from io import StringIO
-from optparse import OptionParser
-
-import damask
-
-
-scriptName = os.path.splitext(os.path.basename(__file__))[0]
-scriptID   = ' '.join([scriptName,damask.version])
-
-
-# --------------------------------------------------------------------
-#                                MAIN
-# --------------------------------------------------------------------
-
-parser = OptionParser(usage='%prog options [ASCIItable(s)]', description = """
-Add displacments resulting from deformation gradient field.
-Operates on periodic three-dimensional x,y,z-ordered data sets.
-Outputs at cell centers or cell nodes (into separate file).
-
-""", version = scriptID)
-
-parser.add_option('-f',
-                  '--defgrad',
-                  dest    = 'f',
-                  metavar = 'string',
-                  help    = 'label of deformation gradient [%default]')
-parser.add_option('-p',
-                  '--pos', '--position',
-                  dest    = 'pos',
-                  metavar = 'string',
-                  help    = 'label of coordinates [%default]')
-parser.add_option('--nodal',
-                  dest    = 'nodal',
-                  action  = 'store_true',
-                  help    = 'output nodal (instead of cell-centered) displacements')
-
-parser.set_defaults(f   = 'f',
-                    pos = 'pos',
-                   )
-
-(options,filenames) = parser.parse_args()
-
-for name in filenames:
-    damask.util.report(scriptName,name)
-
-    table = damask.Table.load(StringIO(''.join(sys.stdin.read())) if name is None else name)
-    grid,size,origin = damask.grid_filters.cellsSizeOrigin_coordinates0_point(table.get(options.pos))
-
-    F = table.get(options.f).reshape(tuple(grid)+(-1,),order='F').reshape(tuple(grid)+(3,3))
-    if options.nodal:
-        damask.Table(damask.grid_filters.coordinates0_node(grid,size).reshape(-1,3,order='F'),
-                     {'pos':(3,)})\
-              .add('avg({}).{}'.format(options.f,options.pos),
-                   damask.grid_filters.displacement_avg_node(size,F).reshape(-1,3,order='F'),
-                   scriptID+' '+' '.join(sys.argv[1:]))\
-              .add('fluct({}).{}'.format(options.f,options.pos),
-                   damask.grid_filters.displacement_fluct_node(size,F).reshape(-1,3,order='F'),
-                    scriptID+' '+' '.join(sys.argv[1:]))\
-               .save((sys.stdout if name is None else os.path.splitext(name)[0]+'_nodal.txt'))
-    else:
-        table.add('avg({}).{}'.format(options.f,options.pos),
-                  damask.grid_filters.displacement_avg_point(size,F).reshape(-1,3,order='F'),
-                  scriptID+' '+' '.join(sys.argv[1:]))\
-             .add('fluct({}).{}'.format(options.f,options.pos),
-                  damask.grid_filters.displacement_fluct_point(size,F).reshape(-1,3,order='F'),
-                  scriptID+' '+' '.join(sys.argv[1:]))\
-             .save((sys.stdout if name is None else name))