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fixing invalid yaml 

Strange that material.yaml made by ConfigMaterial class is creating
problems
This commit is contained in:
Vitesh Shah 2023-05-04 13:20:12 +02:00
parent b5b6c2d695
commit 7ec3d1da8a
3 changed files with 161 additions and 162 deletions
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303
python/tests/reference/Result/2phase_irregularGrid.material.yaml vendored
View File

@ -4,156 +4,156 @@ homogenization:
mechanical: {type: pass} mechanical: {type: pass}
material: material:
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.8187747463221231, -0.08229869824739107, -0.23862386376219033, 0.5156486116486025] O: [0.8187747463221231, -0.08229869824739107, -0.23862386376219033, 0.5156486116486025]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.00779831139193156, 0.7057005186849878, 0.4364671152861853, -0.5580523465956659] O: [0.00779831139193156, 0.7057005186849878, 0.4364671152861853, -0.5580523465956659]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.763519780435354, -0.6341076355496138, -0.02362571418162295, -0.11994530858285005] O: [0.763519780435354, -0.6341076355496138, -0.02362571418162295, -0.11994530858285005]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.12614487663761753, -0.8035237781612357, 0.25955390004292433, -0.5206426615252359] O: [0.12614487663761753, -0.8035237781612357, 0.25955390004292433, -0.5206426615252359]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.48292196055798753, -0.30383592620213656, -0.8207195717084866, -0.02982439562435001] O: [0.48292196055798753, -0.30383592620213656, -0.8207195717084866, -0.02982439562435001]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.1452072201906719, 0.7407701788901938, 0.1287976412080835, -0.6431061909908207] O: [0.1452072201906719, 0.7407701788901938, 0.1287976412080835, -0.6431061909908207]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.5316733275631504, 0.7576742409600085, -0.2279332109770712, -0.3021583503351908] O: [0.5316733275631504, 0.7576742409600085, -0.2279332109770712, -0.3021583503351908]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.012530734285763205, -0.8421540617546023, 0.36033136071804023, -0.4009748464075655] O: [0.012530734285763205, -0.8421540617546023, 0.36033136071804023, -0.4009748464075655]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.3514389344252332, 0.8568665179478536, -0.17341773236704325, -0.3349578121057187] O: [0.3514389344252332, 0.8568665179478536, -0.17341773236704325, -0.3349578121057187]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.76356540695731, -0.3617980794479095, -0.43846188228764454, -0.3063024596484616] O: [0.76356540695731, -0.3617980794479095, -0.43846188228764454, -0.3063024596484616]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.9095149225033018, -0.19373544305446247, 0.22396846149682248, 0.2916972953303654] O: [0.9095149225033018, -0.19373544305446247, 0.22396846149682248, 0.2916972953303654]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.970610319121379, -0.13311785615618685, 0.11180707998050228, -0.16641641040987878] O: [0.970610319121379, -0.13311785615618685, 0.11180707998050228, -0.16641641040987878]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.6287688081865394, -0.6302336350205486, -0.3761307109109609, 0.2568677470023825] O: [0.6287688081865394, -0.6302336350205486, -0.3761307109109609, 0.2568677470023825]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.12531050713142944, 0.19657688811579793, 0.6027691849279488, 0.7631016403877463] O: [0.12531050713142944, 0.19657688811579793, 0.6027691849279488, 0.7631016403877463]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.18259170951798273, -0.31054301971972864, 0.8072489897893745, -0.46751723925721395] O: [0.18259170951798273, -0.31054301971972864, 0.8072489897893745, -0.46751723925721395]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.4168282152811351, -0.5768096639037343, -0.7024973683589526, -0.006503692916398199] O: [0.4168282152811351, -0.5768096639037343, -0.7024973683589526, -0.006503692916398199]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.05471025301089859, -0.268817424064983, -0.6917019637366119, 0.6680511762563296] O: [0.05471025301089859, -0.268817424064983, -0.6917019637366119, 0.6680511762563296]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.13569225124175605, -0.09630046286744257, 0.7749305390613668, 0.6097511733769111] O: [0.13569225124175605, -0.09630046286744257, 0.7749305390613668, 0.6097511733769111]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.08841126630455641, -0.7157581775246106, -0.5306029868829643, 0.44534722364459606] O: [0.08841126630455641, -0.7157581775246106, -0.5306029868829643, 0.44534722364459606]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.829829557415482, 0.42749665734836506, -0.33483536599612435, 0.12850988784463693] O: [0.829829557415482, 0.42749665734836506, -0.33483536599612435, 0.12850988784463693]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.777231609910349, 0.32977105742045876, 0.085330226652726, -0.5290376420098611] O: [0.777231609910349, 0.32977105742045876, 0.085330226652726, -0.5290376420098611]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.6146318348936916, -0.42410349858615193, -0.5078633108637103, 0.42946337154727193] O: [0.6146318348936916, -0.42410349858615193, -0.5078633108637103, 0.42946337154727193]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.7875431634281553, -0.2145125018495351, 0.11484062958440554, 0.5661905881277826] O: [0.7875431634281553, -0.2145125018495351, 0.11484062958440554, 0.5661905881277826]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.0073874257920942465, -0.6809023239643809, -0.3622565714334207, 0.636464946099449] O: [0.0073874257920942465, -0.6809023239643809, -0.3622565714334207, 0.636464946099449]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.4869613101239914, -0.7794418563496424, -0.15730145456933006, 0.3613797551093897] O: [0.4869613101239914, -0.7794418563496424, -0.15730145456933006, 0.3613797551093897]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.026777372910297224, -0.6567053919161102, -0.7129731040925348, -0.24431609314366995] O: [0.026777372910297224, -0.6567053919161102, -0.7129731040925348, -0.24431609314366995]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Precipitate - phase: Precipitate
O: [0.7446524239501089, 0.09381317531371008, -0.06467616066163769, -0.6576540503067374] O: [0.7446524239501089, 0.09381317531371008, -0.06467616066163769, -0.6576540503067374]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.3999921641350174, -0.8372033940679338, -0.2294372785031889, -0.29403278868991367] O: [0.3999921641350174, -0.8372033940679338, -0.2294372785031889, -0.29403278868991367]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.30872213423241257, -0.6538189159753086, 0.6905797899219358, -0.017635835654472017] O: [0.30872213423241257, -0.6538189159753086, 0.6905797899219358, -0.017635835654472017]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
- constituents: - constituents:
- phase: Matrix - phase: Matrix
O: [0.20977668146688438, 0.8051532219239168, -0.03830522823579576, 0.5534028755148287] O: [0.20977668146688438, 0.8051532219239168, -0.03830522823579576, 0.5534028755148287]
v: 1.0 v: 1.0
homogenization: direct homogenization: direct
phase: phase:
Matrix: Matrix:
@ -177,5 +177,4 @@ phase:
lattice: cI lattice: cI
mechanical: mechanical:
output: [F, P, F_e, F_p, L_p, O] output: [F, P, F_e, F_p, L_p, O]
elastic: {C_11: 233.3e9, C_12: 135.5e9, C_44: 118.0e9, type: Hooke} elastic: {C_11: 233.3e9, C_12: 135.5e9, C_44: 118.0e9, type: Hooke}

2
python/tests/reference/Result/tensionX.yaml vendored
View File

@ -15,4 +15,4 @@ loadstep:
discretization: discretization:
t: 10 t: 10
N: 40 N: 40
f_out: 40 f_out: 40

18
python/tests/test_Result.py
View File

@ -440,12 +440,12 @@ class TestResult:
result.export_DREAM3D(target_dir=tmp_path) result.export_DREAM3D(target_dir=tmp_path)
ref_file = h5py.File(ref_path/'2phase_irregularGrid.dream3d','r') ref_file = h5py.File(ref_path/'2phase_irregularGrid.dream3d','r')
job_file_no_ext = result.fname.stem job_file_no_ext = result.fname.stem
results_file = h5py.File(tmp_path/f'{job_file_no_ext}_increment_0.dream3d','r') results_file = h5py.File(tmp_path/f'{job_file_no_ext}_increment_0.dream3d','r')
error_messages = [] error_messages = []
data_container_label = 'DataContainers/SyntheticVolumeDataContainer' data_container_label = 'DataContainers/SyntheticVolumeDataContainer'
cell_data_label = data_container_label + '/CellData' cell_data_label = data_container_label + '/CellData'
ensemble_label = data_container_label + '/CellEnsembleData' ensemble_label = data_container_label + '/CellEnsembleData'
geom_label = data_container_label + '/_SIMPL_GEOMETRY' geom_label = data_container_label + '/_SIMPL_GEOMETRY'
@ -462,7 +462,7 @@ class TestResult:
if not np.allclose(results_eulers,ref_eulers,atol=1E-06): if not np.allclose(results_eulers,ref_eulers,atol=1E-06):
error_messages.append('Euler angles array does not match') error_messages.append('Euler angles array does not match')
# check CellData group attributes # check CellData group attributes
for attrs in ['AttributeMatrixType','TupleDimensions']: for attrs in ['AttributeMatrixType','TupleDimensions']:
ref_val = ref_file[cell_data_label].attrs[attrs] ref_val = ref_file[cell_data_label].attrs[attrs]
actual_val = results_file[cell_data_label].attrs[attrs] actual_val = results_file[cell_data_label].attrs[attrs]
@ -472,8 +472,8 @@ class TestResult:
# Common Attributes for groups in CellData # Common Attributes for groups in CellData
for dataset in ['/Phases','/EulerAngles']: for dataset in ['/Phases','/EulerAngles']:
for attrs in ['DataArrayVersion','Tuple Axis Dimensions','ComponentDimensions','ObjectType','TupleDimensions']: for attrs in ['DataArrayVersion','Tuple Axis Dimensions','ComponentDimensions','ObjectType','TupleDimensions']:
ref_val = ref_file[cell_data_label + '/' + dataset].attrs[attrs] ref_val = ref_file[cell_data_label + '/' + dataset].attrs[attrs]
actual_val = results_file[cell_data_label + '/' + dataset].attrs[attrs] actual_val = results_file[cell_data_label + '/' + dataset].attrs[attrs]
if not np.array_equal(ref_val,actual_val): if not np.array_equal(ref_val,actual_val):
error_messages.append("Common attributes in datasets of CellData do not match") error_messages.append("Common attributes in datasets of CellData do not match")
@ -481,8 +481,8 @@ class TestResult:
# TODO: check for the array of PhaseTypes too. However, currently phase is assumed Primary by default. # TODO: check for the array of PhaseTypes too. However, currently phase is assumed Primary by default.
# check attributes ensemble matrix # check attributes ensemble matrix
for attrs in ['AttributeMatrixType','TupleDimensions']: for attrs in ['AttributeMatrixType','TupleDimensions']:
ref_val = ref_file[ensemble_label].attrs[attrs] ref_val = ref_file[ensemble_label].attrs[attrs]
actual_val = results_file[ensemble_label].attrs[attrs] actual_val = results_file[ensemble_label].attrs[attrs]
if not np.array_equal(ref_val,actual_val): if not np.array_equal(ref_val,actual_val):
error_messages.append("Attributes of CellEnsembleData do not match") error_messages.append("Attributes of CellEnsembleData do not match")
@ -497,7 +497,7 @@ class TestResult:
# check geometry data # check geometry data
for dataset in ['DIMENSIONS','ORIGIN','SPACING']: for dataset in ['DIMENSIONS','ORIGIN','SPACING']:
results_val = np.array(results_file[geom_label + '/' + dataset]) results_val = np.array(results_file[geom_label + '/' + dataset])
ref_val = np.array(ref_file[geom_label + '/' + dataset]) ref_val = np.array(ref_file[geom_label + '/' + dataset])
if not np.array_equal(ref_val,results_val): if not np.array_equal(ref_val,results_val):
error_messages.append(f'The {dataset} values are incorrect') error_messages.append(f'The {dataset} values are incorrect')
@ -507,7 +507,7 @@ class TestResult:
actual_val = results_file[geom_label].attrs[attrs] actual_val = results_file[geom_label].attrs[attrs]
if not np.array_equal(ref_value,actual_val): if not np.array_equal(ref_value,actual_val):
error_messages.append("Geometry attributes do not match") error_messages.append("Geometry attributes do not match")
assert not error_messages assert not error_messages
def test_XDMF_datatypes(self,tmp_path,single_phase,update,ref_path): def test_XDMF_datatypes(self,tmp_path,single_phase,update,ref_path):