223031012
/
DAMASK_EICMD
mirror of https://github.com/achalhp/DAMASK_EICMD.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

store data directly in HDF5

This commit is contained in:
Sharan 2023-01-10 01:09:57 +01:00
parent d2ad37e7ff
commit 7b6abafbb7
3 changed files with 17 additions and 44 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

19
src/grid/grid_mech_spectral_basic.f90
View File

@ -77,6 +77,7 @@ module grid_mechanical_spectral_basic
C_volAvgLastInc = 0.0_pReal, & !< previous volume average stiffness
C_minMaxAvg = 0.0_pReal, & !< current (min+max)/2 stiffness
C_minMaxAvgLastInc = 0.0_pReal, & !< previous (min+max)/2 stiffness
C_minMaxAvgRestart = 0.0_pReal, & !< (min+max)/2 stiffnes (restart)
S = 0.0_pReal !< current compliance (filled up with zeros)
real(pReal) :: &
@ -256,21 +257,17 @@ subroutine grid_mechanical_spectral_basic_init()
call HDF5_read(C_volAvgLastInc,groupHandle,'C_volAvgLastInc',.false.)
call MPI_Bcast(C_volAvgLastInc,81_MPI_INTEGER_KIND,MPI_DOUBLE,0_MPI_INTEGER_KIND,MPI_COMM_WORLD,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call HDF5_read(C_minMaxAvg,groupHandle,'C_minMaxAvg',.false.)
call MPI_Bcast(C_minMaxAvg,81_MPI_INTEGER_KIND,MPI_DOUBLE,0_MPI_INTEGER_KIND,MPI_COMM_WORLD,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call HDF5_closeGroup(groupHandle)
call HDF5_closeFile(fileHandle)
call MPI_File_open(MPI_COMM_WORLD, trim(getSolverJobName())//'.C_ref', &
MPI_MODE_RDONLY,MPI_INFO_NULL,fileUnit,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call MPI_File_read(fileUnit,C_minMaxAvg,81_MPI_INTEGER_KIND,MPI_DOUBLE,status,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call MPI_File_close(fileUnit,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
end if restartRead2
call utilities_updateGamma(C_minMaxAvg)
call utilities_saveReferenceStiffness
C_minMaxAvgRestart = C_minMaxAvg
end subroutine grid_mechanical_spectral_basic_init
@ -420,6 +417,8 @@ subroutine grid_mechanical_spectral_basic_restartWrite
call DMDAVecGetArrayF90(da,solution_vec,F,err_PETSc)
CHKERRQ(err_PETSc)
if (num%update_gamma) C_minMaxAvgRestart = C_minMaxAvg
print'(1x,a)', 'writing solver data required for restart to file'; flush(IO_STDOUT)
fileHandle = HDF5_openFile(getSolverJobName()//'_restart.hdf5','w')
@ -438,13 +437,11 @@ subroutine grid_mechanical_spectral_basic_restartWrite
call HDF5_write(F_aimDot,groupHandle,'F_aimDot',.false.)
call HDF5_write(C_volAvg,groupHandle,'C_volAvg',.false.)
call HDF5_write(C_volAvgLastInc,groupHandle,'C_volAvgLastInc',.false.)
call HDF5_write(C_minMaxAvg,groupHandle,'C_minMaxAvg',.false.)
call HDF5_write(C_minMaxAvgRestart,groupHandle,'C_minMaxAvg',.false.)
call HDF5_closeGroup(groupHandle)
call HDF5_closeFile(fileHandle)
end if
if (num%update_gamma) call utilities_saveReferenceStiffness
call DMDAVecRestoreArrayF90(da,solution_vec,F,err_PETSc)
CHKERRQ(err_PETSc)

18
src/grid/grid_mech_spectral_polarisation.f90
View File

@ -85,6 +85,7 @@ module grid_mechanical_spectral_polarisation
C_volAvgLastInc = 0.0_pReal, & !< previous volume average stiffness
C_minMaxAvg = 0.0_pReal, & !< current (min+max)/2 stiffness
C_minMaxAvgLastInc = 0.0_pReal, & !< previous (min+max)/2 stiffness
C_minMaxAvgRestart = 0.0_pReal, & !< (min+max)/2 stiffnes (restart)
S = 0.0_pReal, & !< current compliance (filled up with zeros)
C_scale = 0.0_pReal, &
S_scale = 0.0_pReal
@ -283,21 +284,17 @@ subroutine grid_mechanical_spectral_polarisation_init()
call HDF5_read(C_volAvgLastInc,groupHandle,'C_volAvgLastInc',.false.)
call MPI_Bcast(C_volAvgLastInc,81_MPI_INTEGER_KIND,MPI_DOUBLE,0_MPI_INTEGER_KIND,MPI_COMM_WORLD,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call HDF5_read(C_minMaxAvg,groupHandle,'C_minMaxAvg',.false.)
call MPI_Bcast(C_minMaxAvg,81_MPI_INTEGER_KIND,MPI_DOUBLE,0_MPI_INTEGER_KIND,MPI_COMM_WORLD,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call HDF5_closeGroup(groupHandle)
call HDF5_closeFile(fileHandle)
call MPI_File_open(MPI_COMM_WORLD, trim(getSolverJobName())//'.C_ref', &
MPI_MODE_RDONLY,MPI_INFO_NULL,fileUnit,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call MPI_File_read(fileUnit,C_minMaxAvg,81_MPI_INTEGER_KIND,MPI_DOUBLE,status,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
call MPI_File_close(fileUnit,err_MPI)
if (err_MPI /= 0_MPI_INTEGER_KIND) error stop 'MPI error'
end if restartRead2
call utilities_updateGamma(C_minMaxAvg)
call utilities_saveReferenceStiffness
C_minMaxAvgRestart = C_minMaxAvg
C_scale = C_minMaxAvg
S_scale = math_invSym3333(C_minMaxAvg)
@ -477,6 +474,8 @@ subroutine grid_mechanical_spectral_polarisation_restartWrite
F => FandF_tau(0: 8,:,:,:)
F_tau => FandF_tau(9:17,:,:,:)
if (num%update_gamma) C_minMaxAvgRestart = C_minMaxAvg
print'(1x,a)', 'writing solver data required for restart to file'; flush(IO_STDOUT)
fileHandle = HDF5_openFile(getSolverJobName()//'_restart.hdf5','w')
@ -497,12 +496,11 @@ subroutine grid_mechanical_spectral_polarisation_restartWrite
call HDF5_write(F_aimDot,groupHandle,'F_aimDot',.false.)
call HDF5_write(C_volAvg,groupHandle,'C_volAvg',.false.)
call HDF5_write(C_volAvgLastInc,groupHandle,'C_volAvgLastInc',.false.)
call HDF5_write(C_minMaxAvgRestart,groupHandle,'C_minMaxAvg',.false.)
call HDF5_closeGroup(groupHandle)
call HDF5_closeFile(fileHandle)
end if
if (num%update_gamma) call utilities_saveReferenceStiffness
call DMDAVecRestoreArrayF90(da,solution_vec,FandF_tau,err_PETSc)
CHKERRQ(err_PETSc)

24
src/grid/spectral_utilities.f90
View File

@ -126,8 +126,7 @@ module spectral_utilities
utilities_constitutiveResponse, &
utilities_calculateRate, &
utilities_forwardField, &
utilities_updateCoords, &
utilities_saveReferenceStiffness
utilities_updateCoords
contains
@ -1098,27 +1097,6 @@ subroutine utilities_updateCoords(F)
end subroutine utilities_updateCoords
!---------------------------------------------------------------------------------------------------
!> @brief Write out the current reference stiffness for restart.
!---------------------------------------------------------------------------------------------------
subroutine utilities_saveReferenceStiffness()
integer :: &
fileUnit,ierr
if (worldrank == 0) then
print'(/,1x,a)', '... writing reference stiffness data required for restart to file .........'; flush(IO_STDOUT)
open(newunit=fileUnit, file=getSolverJobName()//'.C_ref',&
status='replace',access='stream',action='write',iostat=ierr)
if (ierr /=0) call IO_error(100,ext_msg='could not open file '//getSolverJobName()//'.C_ref')
write(fileUnit) C_ref*wgt
close(fileUnit)
end if
end subroutine utilities_saveReferenceStiffness
!--------------------------------------------------------------------------------------------------
!> @brief Check correctness of forward-backward transform.
!--------------------------------------------------------------------------------------------------