Merge branch 'MoreImprovements' into marc-improvements
This commit is contained in:
Martin Diehl
commit
76d0383c2f
2
PRIVATE
2
PRIVATE
|
|
@ -1 +1 @@
|
|||
Subproject commit 3eeffba1513c0495032d0f33522e3aaa1ed77465
|
||||
Subproject commit 66d562c755cd9aa4bbb8280c509383014acd52db
|
||||
|
|
@ -4,14 +4,6 @@
|
|||
[SX]
|
||||
mech none
|
||||
|
||||
#-------------------#
|
||||
<crystallite>
|
||||
#-------------------#
|
||||
|
||||
[aLittleSomething]
|
||||
(output) f
|
||||
(output) p
|
||||
|
||||
#-------------------#
|
||||
<phase>
|
||||
#-------------------#
|
||||
|
|
@ -50,408 +42,212 @@ interaction_twinslip 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
|
|||
interaction_twintwin 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
|
||||
atol_resistance 1
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
|
||||
#-------------------#
|
||||
<microstructure>
|
||||
#-------------------#
|
||||
|
||||
[Grain001]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 1 fraction 1.0
|
||||
|
||||
[Grain002]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 2 fraction 1.0
|
||||
|
||||
[Grain003]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 3 fraction 1.0
|
||||
|
||||
[Grain004]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 4 fraction 1.0
|
||||
|
||||
[Grain005]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 5 fraction 1.0
|
||||
|
||||
[Grain006]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 6 fraction 1.0
|
||||
|
||||
[Grain007]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 7 fraction 1.0
|
||||
|
||||
[Grain008]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 8 fraction 1.0
|
||||
|
||||
[Grain009]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 9 fraction 1.0
|
||||
|
||||
[Grain010]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 10 fraction 1.0
|
||||
|
||||
[Grain011]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 11 fraction 1.0
|
||||
|
||||
[Grain012]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 12 fraction 1.0
|
||||
|
||||
[Grain013]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 13 fraction 1.0
|
||||
|
||||
[Grain014]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 14 fraction 1.0
|
||||
|
||||
[Grain015]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 15 fraction 1.0
|
||||
|
||||
[Grain016]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 16 fraction 1.0
|
||||
|
||||
[Grain017]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 17 fraction 1.0
|
||||
|
||||
[Grain018]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 18 fraction 1.0
|
||||
|
||||
[Grain019]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 19 fraction 1.0
|
||||
|
||||
[Grain020]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 20 fraction 1.0
|
||||
|
||||
[Grain021]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 21 fraction 1.0
|
||||
|
||||
[Grain022]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 22 fraction 1.0
|
||||
|
||||
[Grain023]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 23 fraction 1.0
|
||||
|
||||
[Grain024]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 24 fraction 1.0
|
||||
|
||||
[Grain025]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 25 fraction 1.0
|
||||
|
||||
[Grain026]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 26 fraction 1.0
|
||||
|
||||
[Grain027]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 27 fraction 1.0
|
||||
|
||||
[Grain028]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 28 fraction 1.0
|
||||
|
||||
[Grain029]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 29 fraction 1.0
|
||||
|
||||
[Grain030]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 30 fraction 1.0
|
||||
|
||||
[Grain031]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 31 fraction 1.0
|
||||
|
||||
[Grain032]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 32 fraction 1.0
|
||||
|
||||
[Grain033]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 33 fraction 1.0
|
||||
|
||||
[Grain034]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 34 fraction 1.0
|
||||
|
||||
[Grain035]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 35 fraction 1.0
|
||||
|
||||
[Grain036]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 36 fraction 1.0
|
||||
|
||||
[Grain037]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 37 fraction 1.0
|
||||
|
||||
[Grain038]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 38 fraction 1.0
|
||||
|
||||
[Grain039]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 39 fraction 1.0
|
||||
|
||||
[Grain040]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 40 fraction 1.0
|
||||
|
||||
[Grain041]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 41 fraction 1.0
|
||||
|
||||
[Grain042]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 42 fraction 1.0
|
||||
|
||||
[Grain043]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 43 fraction 1.0
|
||||
|
||||
[Grain044]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 44 fraction 1.0
|
||||
|
||||
[Grain045]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 45 fraction 1.0
|
||||
|
||||
[Grain046]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 46 fraction 1.0
|
||||
|
||||
[Grain047]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 47 fraction 1.0
|
||||
|
||||
[Grain048]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 48 fraction 1.0
|
||||
|
||||
[Grain049]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 49 fraction 1.0
|
||||
|
||||
[Grain050]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 50 fraction 1.0
|
||||
|
||||
[Grain051]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 51 fraction 1.0
|
||||
|
||||
[Grain052]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 52 fraction 1.0
|
||||
|
||||
[Grain053]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 53 fraction 1.0
|
||||
|
||||
[Grain054]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 54 fraction 1.0
|
||||
|
||||
[Grain055]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 55 fraction 1.0
|
||||
|
||||
[Grain056]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 56 fraction 1.0
|
||||
|
||||
[Grain057]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 57 fraction 1.0
|
||||
|
||||
[Grain058]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 58 fraction 1.0
|
||||
|
||||
[Grain059]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 59 fraction 1.0
|
||||
|
||||
[Grain060]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 60 fraction 1.0
|
||||
|
||||
[Grain061]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 61 fraction 1.0
|
||||
|
||||
[Grain062]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 62 fraction 1.0
|
||||
|
||||
[Grain063]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 63 fraction 1.0
|
||||
|
||||
[Grain064]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 64 fraction 1.0
|
||||
|
||||
[Grain065]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 65 fraction 1.0
|
||||
|
||||
[Grain066]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 66 fraction 1.0
|
||||
|
||||
[Grain067]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 67 fraction 1.0
|
||||
|
||||
[Grain068]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 68 fraction 1.0
|
||||
|
||||
[Grain069]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 69 fraction 1.0
|
||||
|
||||
[Grain070]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 70 fraction 1.0
|
||||
|
||||
[Grain071]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 71 fraction 1.0
|
||||
|
||||
[Grain072]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 72 fraction 1.0
|
||||
|
||||
[Grain073]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 73 fraction 1.0
|
||||
|
||||
[Grain074]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 74 fraction 1.0
|
||||
|
||||
[Grain075]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 75 fraction 1.0
|
||||
|
||||
[Grain076]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 76 fraction 1.0
|
||||
|
||||
[Grain077]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 77 fraction 1.0
|
||||
|
||||
[Grain078]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 78 fraction 1.0
|
||||
|
||||
[Grain079]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 79 fraction 1.0
|
||||
|
||||
[Grain080]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 80 fraction 1.0
|
||||
|
||||
[Grain081]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 81 fraction 1.0
|
||||
|
||||
[Grain082]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 82 fraction 1.0
|
||||
|
||||
[Grain083]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 83 fraction 1.0
|
||||
|
||||
[Grain084]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 84 fraction 1.0
|
||||
|
||||
[Grain085]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 85 fraction 1.0
|
||||
|
||||
[Grain086]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 86 fraction 1.0
|
||||
|
||||
[Grain087]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 87 fraction 1.0
|
||||
|
||||
[Grain088]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 88 fraction 1.0
|
||||
|
||||
[Grain089]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 89 fraction 1.0
|
||||
|
||||
[Grain090]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 90 fraction 1.0
|
||||
|
||||
[Grain091]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 91 fraction 1.0
|
||||
|
||||
[Grain092]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 92 fraction 1.0
|
||||
|
||||
[Grain093]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 93 fraction 1.0
|
||||
|
||||
[Grain094]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 94 fraction 1.0
|
||||
|
||||
[Grain095]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 95 fraction 1.0
|
||||
|
||||
[Grain096]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 96 fraction 1.0
|
||||
|
||||
[Grain097]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 97 fraction 1.0
|
||||
|
||||
[Grain098]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 98 fraction 1.0
|
||||
|
||||
[Grain099]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 99 fraction 1.0
|
||||
|
||||
[Grain100]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 100 fraction 1.0
|
||||
|
||||
#-------------------#
|
||||
|
|
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|||
|
|
@ -419,11 +419,6 @@
|
|||
[cube]
|
||||
(gauss) phi1 0 Phi 0 phi2 0
|
||||
|
||||
#-------------------#
|
||||
<crystallite>
|
||||
#-------------------#
|
||||
|
||||
{../ConfigFiles/Crystallite_All.config}
|
||||
|
||||
#-------------------#
|
||||
<phase>
|
||||
|
|
|
|||
|
|
@ -3,25 +3,12 @@
|
|||
#-------------------#
|
||||
|
||||
[direct]
|
||||
mech none # isostrain 1 grain
|
||||
mech none
|
||||
|
||||
thermal adiabatic # thermal strain (stress) induced mass transport
|
||||
thermal adiabatic
|
||||
t0 330.0
|
||||
(output) temperature
|
||||
|
||||
#-------------------#
|
||||
<crystallite>
|
||||
#-------------------#
|
||||
|
||||
[aLittleSomething]
|
||||
|
||||
(output) texture
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#-------------------#
|
||||
<phase>
|
||||
#-------------------#
|
||||
|
|
@ -34,6 +21,12 @@ plasticity none
|
|||
{config/elastic_isotropic.config}
|
||||
{config/thermal.config}
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#.................
|
||||
[Ti matrix]
|
||||
|
||||
|
|
@ -43,6 +36,12 @@ plasticity none
|
|||
{config/elastic_Ti.config}
|
||||
{config/thermal.config}
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#.................
|
||||
[isotropic inclusion]
|
||||
|
||||
|
|
@ -52,6 +51,12 @@ plasticity none
|
|||
{config/thermal.config}
|
||||
{config/thermalExpansion_isotropic.config}
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#.................
|
||||
[anisotropic inclusion]
|
||||
|
||||
|
|
@ -61,6 +66,12 @@ plasticity none
|
|||
{config/thermal.config}
|
||||
{config/thermalExpansion_fullyAnisotropic.config}
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#.................
|
||||
[Ti inclusion]
|
||||
|
||||
|
|
@ -71,32 +82,32 @@ plasticity none
|
|||
{config/thermal.config}
|
||||
{config/thermalExpansion_Ti.config}
|
||||
|
||||
(output) f
|
||||
(output) p
|
||||
(output) fe
|
||||
(output) fi
|
||||
(output) fp
|
||||
|
||||
#--------------------------#
|
||||
<microstructure>
|
||||
#--------------------------#
|
||||
|
||||
[isotropic matrix]
|
||||
crystallite 1
|
||||
(constituent) phase 1 texture 1 fraction 1.0
|
||||
|
||||
[Ti matrix]
|
||||
crystallite 1
|
||||
(constituent) phase 2 texture 1 fraction 1.0
|
||||
|
||||
[isotropic inclusion]
|
||||
crystallite 1
|
||||
(constituent) phase 3 texture 1 fraction 1.0
|
||||
|
||||
[anisotropic inclusion]
|
||||
crystallite 1
|
||||
(constituent) phase 4 texture 1 fraction 1.0
|
||||
|
||||
[rotated inclusion]
|
||||
crystallite 1
|
||||
(constituent) phase 4 texture 2 fraction 1.0
|
||||
|
||||
[Ti inclusion]
|
||||
crystallite 1
|
||||
(constituent) phase 5 texture 1 fraction 1.0
|
||||
|
||||
#--------------------------#
|
||||
|
|
|
|||
|
|
@ -2,6 +2,7 @@
|
|||
|
||||
import os
|
||||
import sys
|
||||
from io import StringIO
|
||||
from optparse import OptionParser
|
||||
|
||||
import numpy as np
|
||||
|
|
@ -24,61 +25,33 @@ Transform X,Y,Z,F APS BeamLine 34 coordinates to x,y,z APS strain coordinates.
|
|||
|
||||
parser.add_option('-f','--frame',dest='frame', metavar='string',
|
||||
help='label of APS X,Y,Z coords')
|
||||
parser.add_option('--depth', dest='depth', metavar='string',
|
||||
parser.add_option('--depth', dest='depth', metavar='string',
|
||||
help='depth')
|
||||
|
||||
(options,filenames) = parser.parse_args()
|
||||
if filenames == []: filenames = [None]
|
||||
|
||||
if options.frame is None:
|
||||
parser.error('frame not specified')
|
||||
if options.depth is None:
|
||||
parser.error('depth not specified')
|
||||
|
||||
# --- loop over input files ------------------------------------------------------------------------
|
||||
|
||||
if filenames == []: filenames = [None]
|
||||
theta=-0.75*np.pi
|
||||
RotMat2TSL=np.array([[1., 0., 0.],
|
||||
[0., np.cos(theta), np.sin(theta)], # Orientation to account for -135 deg
|
||||
[0., -np.sin(theta), np.cos(theta)]]) # rotation for TSL convention
|
||||
|
||||
for name in filenames:
|
||||
try: table = damask.ASCIItable(name = name,
|
||||
buffered = False)
|
||||
except: continue
|
||||
damask.util.report(scriptName,name)
|
||||
damask.util.report(scriptName,name)
|
||||
|
||||
# ------------------------------------------ read header ------------------------------------------
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
|
||||
table.head_read()
|
||||
coord = - table.get(options.frame)
|
||||
coord[:,2] += table.get(options.depth)[:,0]
|
||||
|
||||
# ------------------------------------------ sanity checks -----------------------------------------
|
||||
errors = []
|
||||
if table.label_dimension(options.frame) != 3:
|
||||
errors.append('input {} does not have dimension 3.'.format(options.frame))
|
||||
if table.label_dimension(options.depth) != 1:
|
||||
errors.append('input {} does not have dimension 1.'.format(options.depth))
|
||||
if errors != []:
|
||||
damask.util.croak(errors)
|
||||
table.close(dismiss = True)
|
||||
continue
|
||||
table.add('coord',
|
||||
np.einsum('ijk,ik->ij',np.broadcast_to(RotMat2TSL,(coord.shape[0],3,3)),coord),
|
||||
scriptID+' '+' '.join(sys.argv[1:]))
|
||||
|
||||
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
|
||||
|
||||
# ------------------------------------------ assemble header ---------------------------------------
|
||||
table.labels_append(['%i_coord'%(i+1) for i in range(3)]) # extend ASCII header with new labels
|
||||
table.head_write()
|
||||
|
||||
# ------------------------------------------ process data ------------------------------------------
|
||||
theta=-0.75*np.pi
|
||||
RotMat2TSL=np.array([[1., 0., 0.],
|
||||
[0., np.cos(theta), np.sin(theta)], # Orientation to account for -135 deg
|
||||
[0., -np.sin(theta), np.cos(theta)]]) # rotation for TSL convention
|
||||
outputAlive = True
|
||||
while outputAlive and table.data_read(): # read next data line of ASCII table
|
||||
coord = list(map(float,table.data[table.label_index(options.frame):table.label_index(options.frame)+3]))
|
||||
depth = float(table.data[table.label_index(options.depth)])
|
||||
|
||||
table.data_append(np.dot(RotMat2TSL,np.array([-coord[0],-coord[1],-coord[2]+depth])))
|
||||
|
||||
outputAlive = table.data_write() # output processed line
|
||||
|
||||
# ------------------------------------------ output finalization -----------------------------------
|
||||
|
||||
table.close() # close ASCII tables
|
||||
table.to_ASCII(sys.stdout if name is None else name)
|
||||
|
|
|
|||
|
|
@ -176,7 +176,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
F = table.get(options.defgrad).reshape(grid[2],grid[1],grid[0],3,3)
|
||||
nodes = damask.grid_filters.node_coord(size,F)
|
||||
|
|
|
|||
|
|
@ -44,7 +44,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
for label in options.labels:
|
||||
field = table.get(label)
|
||||
|
|
|
|||
|
|
@ -50,7 +50,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
F = table.get(options.f).reshape(np.append(grid[::-1],(3,3)))
|
||||
if options.nodal:
|
||||
|
|
|
|||
|
|
@ -44,7 +44,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
for label in options.labels:
|
||||
field = table.get(label)
|
||||
|
|
|
|||
|
|
@ -143,7 +143,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
neighborhood = neighborhoods[options.neighborhood]
|
||||
diffToNeighbor = np.empty(list(grid+2)+[len(neighborhood)],'i')
|
||||
|
|
|
|||
|
|
@ -44,7 +44,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
for label in options.labels:
|
||||
field = table.get(label)
|
||||
|
|
|
|||
|
|
@ -65,7 +65,7 @@ for name in filenames:
|
|||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
|
||||
if (options.grid is None or options.size is None):
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
else:
|
||||
grid = np.array(options.grid,'i')
|
||||
size = np.array(options.size,'d')
|
||||
|
|
|
|||
|
|
@ -54,7 +54,7 @@ for name in filenames:
|
|||
damask.util.report(scriptName,name)
|
||||
|
||||
table = damask.Table.from_ASCII(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.get(options.pos))
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.get(options.pos))
|
||||
|
||||
packing = np.array(options.packing,'i')
|
||||
outSize = grid*packing
|
||||
|
|
|
|||
|
|
@ -86,7 +86,7 @@ for name in filenames:
|
|||
if options.phase is None:
|
||||
table.data = np.column_stack((table.data,np.ones(len(table.data)))) # add single phase if no phase column given
|
||||
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_2_DNA(table.data[:,0:3])
|
||||
grid,size,origin = damask.grid_filters.cell_coord0_gridSizeOrigin(table.data[:,0:3])
|
||||
|
||||
indices = np.lexsort((table.data[:,0],table.data[:,1],table.data[:,2])) # indices of position when sorting x fast, z slow
|
||||
microstructure = np.empty(grid,dtype = int) # initialize empty microstructure
|
||||
|
|
|
|||
|
|
@ -181,7 +181,7 @@ def cell_coord(size,F,origin=np.zeros(3)):
|
|||
"""
|
||||
return cell_coord0(F.shape[:3][::-1],size,origin) + cell_displacement(size,F)
|
||||
|
||||
def cell_coord0_2_DNA(coord0,ordered=True):
|
||||
def cell_coord0_gridSizeOrigin(coord0,ordered=True):
|
||||
"""
|
||||
Return grid 'DNA', i.e. grid, size, and origin from array of cell positions.
|
||||
|
||||
|
|
@ -231,7 +231,7 @@ def coord0_check(coord0):
|
|||
array of undeformed cell coordinates.
|
||||
|
||||
"""
|
||||
cell_coord0_2_DNA(coord0,ordered=True)
|
||||
cell_coord0_gridSizeOrigin(coord0,ordered=True)
|
||||
|
||||
|
||||
|
||||
|
|
@ -331,7 +331,7 @@ def node_2_cell(node_data):
|
|||
|
||||
return c[:-1,:-1,:-1]
|
||||
|
||||
def node_coord0_2_DNA(coord0,ordered=False):
|
||||
def node_coord0_gridSizeOrigin(coord0,ordered=False):
|
||||
"""
|
||||
Return grid 'DNA', i.e. grid, size, and origin from array of nodal positions.
|
||||
|
||||
|
|
|
|||
|
|
@ -22,7 +22,7 @@ class Table():
|
|||
Additional, human-readable information.
|
||||
|
||||
"""
|
||||
self.comments = ['table.py v {}'.format(version)] if not comments else [c for c in comments]
|
||||
self.comments = [] if comments is None else [c for c in comments]
|
||||
self.data = pd.DataFrame(data=data)
|
||||
self.shapes = shapes
|
||||
self.__label_condensed()
|
||||
|
|
@ -77,10 +77,9 @@ class Table():
|
|||
if keyword == 'header':
|
||||
header = int(header)
|
||||
else:
|
||||
raise Exception
|
||||
raise TypeError
|
||||
|
||||
comments = ['table.py:from_ASCII v {}'.format(version)]
|
||||
comments+= [f.readline()[:-1] for i in range(1,header)]
|
||||
comments = [f.readline()[:-1] for i in range(1,header)]
|
||||
labels = f.readline().split()
|
||||
|
||||
shapes = {}
|
||||
|
|
@ -139,7 +138,7 @@ class Table():
|
|||
|
||||
data = np.loadtxt(content)
|
||||
for c in range(data.shape[1]-10):
|
||||
shapes['user_defined{}'.format(c+1)] = (1,)
|
||||
shapes['n/a_{}'.format(c+1)] = (1,)
|
||||
|
||||
return Table(data,shapes,comments)
|
||||
|
||||
|
|
|
|||
|
|
@ -26,12 +26,12 @@ class TestGridFilters:
|
|||
|
||||
@pytest.mark.parametrize('mode',[('cell'),('node')])
|
||||
def test_grid_DNA(self,mode):
|
||||
"""Ensure that xx_coord0_2_DNA is the inverse of xx_coord0."""
|
||||
"""Ensure that xx_coord0_gridSizeOrigin is the inverse of xx_coord0."""
|
||||
grid = np.random.randint(8,32,(3))
|
||||
size = np.random.random(3)
|
||||
origin = np.random.random(3)
|
||||
coord0 = eval('grid_filters.{}_coord0(grid,size,origin)'.format(mode)) # noqa
|
||||
_grid,_size,_origin = eval('grid_filters.{}_coord0_2_DNA(coord0.reshape((-1,3)))'.format(mode))
|
||||
_grid,_size,_origin = eval('grid_filters.{}_coord0_gridSizeOrigin(coord0.reshape((-1,3)))'.format(mode))
|
||||
assert np.allclose(grid,_grid) and np.allclose(size,_size) and np.allclose(origin,_origin)
|
||||
|
||||
def test_displacement_fluct_equivalence(self):
|
||||
|
|
|
|||
Loading…
Reference in New Issue