diff --git a/env/CONFIG b/env/CONFIG index 343e21a60..380197583 100644 --- a/env/CONFIG +++ b/env/CONFIG @@ -1,5 +1,5 @@ # "set"-syntax needed only for tcsh (but works with bash and zsh) -set DAMASK_NUM_THREADS = 4 +set DAMASK_NUM_THREADS = 4 -set MSC_ROOT = /opt/msc -set MARC_VERSION = 2019.1 +set MSC_ROOT = /opt/msc +set MARC_VERSION = 2019.1 diff --git a/installation/mods_MarcMentat/apply_DAMASK_modifications.py b/installation/mods_MarcMentat/apply_DAMASK_modifications.py new file mode 100755 index 000000000..deea560ac --- /dev/null +++ b/installation/mods_MarcMentat/apply_DAMASK_modifications.py @@ -0,0 +1,65 @@ +#!/usr/bin/env python3 + +import os +import glob +import argparse +from pathlib import Path + +import damask + +marc_version = float(damask.environment.options['MARC_VERSION']) +msc_root = Path(damask.environment.options['MSC_ROOT']) +damask_root = damask.environment.root_dir + +parser = argparse.ArgumentParser( + description='Apply DAMASK modification to MSC.Marc/Mentat', + epilog = f'MSC_ROOT={msc_root} and MARC_VERSION={marc_version} (from {damask_root}/env/CONFIG)') +parser.add_argument('--editor', dest='editor', metavar='string', default='vi', + help='Name of the editor for MSC.Mentat (executable)') + + +def copy_and_replace(in_file,dst): + with open(in_file) as f: + content = f.read() + content = content.replace('%INSTALLDIR%',str(damask_root/'bin')) + content = content.replace('%VERSION%',str(marc_version).replace('.0','')) + content = content.replace('%EDITOR%', parser.parse_args().editor) + with open(dst/Path(in_file).name,'w') as f: + f.write(content) + + +print('adapting Marc tools...\n') + +src = damask_root/f'installation/mods_MarcMentat/{marc_version}/Marc_tools' +dst = msc_root/f'marc{marc_version}/tools' +for in_file in glob.glob(str(src/'*damask*')) + [str(src/'include_linux64')]: + copy_and_replace(in_file,dst) + + +print('adapting Mentat scripts and menus...\n') + +src = damask_root/f'installation/mods_MarcMentat/{marc_version}/Mentat_bin' +dst = msc_root/f'mentat{marc_version}/bin' +for in_file in glob.glob(str(src/'*[!.original]')): + copy_and_replace(in_file,dst) + +src = damask_root/f'installation/mods_MarcMentat/{marc_version}/Mentat_menus' +dst = msc_root/f'mentat{marc_version}/menus' +for in_file in glob.glob(str(src/'job_run.ms')): + copy_and_replace(in_file,dst) + + +print('compiling Mentat menu binaries...') + +executable = str(msc_root/f'mentat{marc_version}/bin/mentat') +menu_file = str(msc_root/f'mentat{marc_version}/menus/linux64/main.msb') +os.system(f'xvfb-run {executable} -compile {menu_file}') + + +print('setting file access rights...\n') + +for pattern in [msc_root/f'marc{marc_version}/tools/*damask*', + msc_root/f'mentat{marc_version}/bin/submit?', + msc_root/f'mentat{marc_version}/bin/kill?']: + for f in glob.glob(str(pattern)): + os.chmod(f,0o755) diff --git a/installation/mods_MarcMentat/apply_DAMASK_modifications.sh b/installation/mods_MarcMentat/apply_DAMASK_modifications.sh deleted file mode 100755 index ac0daf036..000000000 --- a/installation/mods_MarcMentat/apply_DAMASK_modifications.sh +++ /dev/null @@ -1,144 +0,0 @@ -#!/usr/bin/env bash - -SCRIPTLOCATION="$( cd "$( dirname "$0" )" && pwd )" -DAMASK_ROOT=$SCRIPTLOCATION/../../ - -if [ "x$MSC_ROOT" != "x" ]; then - DEFAULT_DIR=$MSC_ROOT -fi -if [ "x$MARC_VERSION" != "x" ]; then - DEFAULT_VERSION=$MARC_VERSION -fi -if [ "x$DAMASK_BIN" != "x" ]; then - BIN_DIR=$DAMASK_ROOT/bin -fi - -while [ ! -d "$SCRIPTLOCATION/$VERSION" ] || [ -z "$VERSION" ] -do - echo "Input version of MARC/MENTAT installation: [${DEFAULT_VERSION}]" - read VERSION - if [ -z "$VERSION" ]; then - VERSION=${DEFAULT_VERSION} - fi - [[ -d "$SCRIPTLOCATION/$VERSION" ]] || echo -e "$VERSION not supported..!\n" -done -echo "MSC version: $VERSION" - -while [ ! -d "$INSTALLDIR" ] || [ -z "$INSTALLDIR" ] -do - echo "Input path of MARC/MENTAT installation: [${DEFAULT_DIR}]" - read INSTALLDIR - if [ -z "$INSTALLDIR" ]; then - INSTALLDIR=${DEFAULT_DIR} - fi - [[ -d "$INSTALLDIR" ]] || echo -e "$INSTALLDIR not found..!\n" -done - -INSTALLDIR=${INSTALLDIR%/} # remove trailing slash -echo "MSC installation path: $INSTALLDIR" - -DEFAULT_EDITOR='vi' -EDITOR='' -while [ -z "$EDITOR" ] -do - echo "Input command to invoke your preferred editor: [${DEFAULT_EDITOR}]" - read EDITOR - if [ -z "$EDITOR" ]; then - EDITOR=${DEFAULT_EDITOR} - fi -done -echo "Editor: $EDITOR" - -# tools -echo '' -echo 'adapting Marc tools...' -theDIR=$INSTALLDIR/marc$VERSION/tools -for filename in 'comp_damask_mp' \ - 'comp_damask_lmp' \ - 'comp_damask_hmp' \ - 'run_damask_mp' \ - 'run_damask_lmp' \ - 'run_damask_hmp' \ - 'include_linux64'; do - cp $SCRIPTLOCATION/$VERSION/Marc_tools/$filename $theDIR - echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g" - echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g" - echo $filename -done - -# Mentat scripts -echo '' -echo 'adapting Mentat scripts...' -theDIR=$INSTALLDIR/mentat$VERSION/bin -for filename in 'edit_window' \ - 'submit4' \ - 'submit5' \ - 'submit6' \ - 'kill4' \ - 'kill5' \ - 'kill6'; do - cp $SCRIPTLOCATION/$VERSION/Mentat_bin/$filename $theDIR - echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g" - echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g" - echo $theDIR/$filename | xargs perl -pi -e "s:%EDITOR%:${EDITOR}:g" - echo $filename -done - -# Mentat scripts -echo -e '\nadapting Mentat menus...' -theDIR=$INSTALLDIR/mentat$VERSION/menus -for filename in 'job_run.ms'; do - cp $SCRIPTLOCATION/$VERSION/Mentat_menus/$filename $theDIR - echo $theDIR/$filename | xargs perl -pi -e "s:%INSTALLDIR%:${INSTALLDIR}:g" - echo $theDIR/$filename | xargs perl -pi -e "s:%VERSION%:${VERSION}:g" - echo $filename -done - -# compile menus -echo '' -echo 'compiling Mentat menu binaries...' -$(which xvfb-run 2>/dev/null) $INSTALLDIR/mentat$VERSION/bin/mentat -compile $INSTALLDIR/mentat$VERSION/menus/linux64/main.msb -[[ $? != 0 ]] && echo '...failed. Try installing xvfb-run on your system.' - -# setting access rights -echo '' -echo 'setting file access rights...' -for filename in marc$VERSION/tools/run_damask* \ - marc$VERSION/tools/comp_damask* \ - mentat$VERSION/bin/submit{4..6} \ - mentat$VERSION/bin/kill{4..6} ; do - chmod 755 $INSTALLDIR/${filename} -done - -#creating symlinks for run_damask_scripts - -if [ -d "$BIN_DIR" ]; then - echo '' - echo "Do you want to create symlinks for run_damask scripts in ${BIN_DIR} [YES/no] ?" - read YESNO - if [ -z "$YESNO" ]; then - YESNO=yes - fi - case $YESNO in - y* | Y* ) - echo'' - echo 'creating symlinks ...' - echo'' - theDIR=$INSTALLDIR/marc$VERSION/tools - for filename in 'run_damask_mp' \ - 'run_damask_lmp' \ - 'run_damask_hmp'; do - echo ${filename:4}$VERSION - [ -f $BIN_DIR/${filename:4}$VERSION ] && rm $BIN_DIR/${filename:4}$VERSION - ln -s $theDIR/$filename $BIN_DIR/${filename:4}$VERSION - done - ;; - esac -fi - -# precompiling user subroutine -echo '' -echo 'precompiling $VERSION HYPELA2 user subroutine...' -echo 'not yet implemented..!' - -echo -e '\ndone.' diff --git a/installation/mods_MarcMentat/installation.txt b/installation/mods_MarcMentat/installation.txt index fc81408cc..cff143d9f 100644 --- a/installation/mods_MarcMentat/installation.txt +++ b/installation/mods_MarcMentat/installation.txt @@ -11,7 +11,7 @@ The Intel Fortran compiler needs to be installed. 1) Install Marc, Mentat and Documentation as usual Run the test example including subroutines to confirm that the installation of both Marc/Mentat and the Intel Fortran Compiler is ok! -2) Run the apply_DAMASK_modifications.sh script from this directory. +2) Run the apply_DAMASK_modifications.py script from this directory. APPENDIX: diff --git a/python/damask/_environment.py b/python/damask/_environment.py index 7b8b8487e..d4b7abe51 100644 --- a/python/damask/_environment.py +++ b/python/damask/_environment.py @@ -3,7 +3,6 @@ from pathlib import Path class Environment: - # ToDo: Probably, we don't need a class (just a module with a few functions) def __init__(self): """Do Nothing.""" pass diff --git a/python/damask/solver/_marc.py b/python/damask/solver/_marc.py index 8cf888295..8e96f1b90 100644 --- a/python/damask/solver/_marc.py +++ b/python/damask/solver/_marc.py @@ -49,7 +49,7 @@ class Marc: ): - usersub = damask.environment.root_dir/Path(f'src/DAMASK_marc{self.version}') + usersub = damask.environment.root_dir/'src/DAMASK_marc' usersub = usersub.parent/(usersub.name + ('.f90' if compile else '.marc')) if not usersub.is_file(): raise FileNotFoundError("DAMASK4Marc ({}) '{}' not found".format(('source' if compile else 'binary'),usersub)) diff --git a/src/DAMASK_marc2018.1.f90 b/src/DAMASK_marc2018.1.f90 deleted file mode 120000 index 2c5bec706..000000000 --- a/src/DAMASK_marc2018.1.f90 +++ /dev/null @@ -1 +0,0 @@ -DAMASK_marc.f90 \ No newline at end of file diff --git a/src/DAMASK_marc2018.f90 b/src/DAMASK_marc2018.f90 deleted file mode 120000 index 2c5bec706..000000000 --- a/src/DAMASK_marc2018.f90 +++ /dev/null @@ -1 +0,0 @@ -DAMASK_marc.f90 \ No newline at end of file diff --git a/src/DAMASK_marc2019.1.f90 b/src/DAMASK_marc2019.1.f90 deleted file mode 120000 index 2c5bec706..000000000 --- a/src/DAMASK_marc2019.1.f90 +++ /dev/null @@ -1 +0,0 @@ -DAMASK_marc.f90 \ No newline at end of file diff --git a/src/DAMASK_marc2019.f90 b/src/DAMASK_marc2019.f90 deleted file mode 120000 index 2c5bec706..000000000 --- a/src/DAMASK_marc2019.f90 +++ /dev/null @@ -1 +0,0 @@ -DAMASK_marc.f90 \ No newline at end of file