Merge remote branch 'origin/development' into pheno+
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commit
6f62ca1ee8
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@ -36,7 +36,7 @@ parser.add_option('--no-volume','-v',
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dest = 'volume',
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dest = 'volume',
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action = 'store_false',
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action = 'store_false',
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help = 'omit volume mismatch')
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help = 'omit volume mismatch')
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parser.set_defaults(coords = 'ipinitialcoord',
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parser.set_defaults(coords = 'pos',
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defgrad = 'f',
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defgrad = 'f',
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shape = True,
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shape = True,
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volume = True,
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volume = True,
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@ -76,9 +76,9 @@ for name in filenames:
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# --------------- figure out size and grid ---------------------------------------------------------
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# --------------- figure out size and grid ---------------------------------------------------------
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table.data_readArray(options.coords)
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table.data_readArray()
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coords = [np.unique(table.data[:,i]) for i in xrange(3)]
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coords = [np.unique(table.data[:,colCoord+i]) for i in xrange(3)]
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mincorner = np.array(map(min,coords))
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mincorner = np.array(map(min,coords))
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maxcorner = np.array(map(max,coords))
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maxcorner = np.array(map(max,coords))
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grid = np.array(map(len,coords),'i')
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grid = np.array(map(len,coords),'i')
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@ -1003,7 +1003,8 @@ fileOpen = False
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assembleHeader = True
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assembleHeader = True
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header = []
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header = []
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standard = ['inc'] + \
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standard = ['inc'] + \
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['time'] if options.time else [] + \
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{True: ['time'],
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False:[]}[options.time] + \
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['elem','node','ip','grain','1_pos','2_pos','3_pos']
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['elem','node','ip','grain','1_pos','2_pos','3_pos']
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# --------------------------- loop over positions --------------------------------
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# --------------------------- loop over positions --------------------------------
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