Merge branch 'normalize-to_pole' into 'development'
normalize to_pole output by default See merge request damask/DAMASK!578
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6c7f2344da
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@ -786,7 +786,8 @@ class Orientation(Rotation,Crystal):
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def to_pole(self, *,
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def to_pole(self, *,
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uvw: FloatSequence = None,
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uvw: FloatSequence = None,
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hkl: FloatSequence = None,
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hkl: FloatSequence = None,
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with_symmetry: bool = False) -> np.ndarray:
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with_symmetry: bool = False,
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normalize: bool = True) -> np.ndarray:
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"""
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"""
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Calculate lab frame vector along lattice direction [uvw] or plane normal (hkl).
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Calculate lab frame vector along lattice direction [uvw] or plane normal (hkl).
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@ -795,18 +796,26 @@ class Orientation(Rotation,Crystal):
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uvw|hkl : numpy.ndarray, shape (...,3)
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uvw|hkl : numpy.ndarray, shape (...,3)
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Miller indices of crystallographic direction or plane normal.
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Miller indices of crystallographic direction or plane normal.
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Shape of vector blends with shape of own rotation array.
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Shape of vector blends with shape of own rotation array.
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For example, a rotation array, shape (3,2) and a vector array of shape (2,4) result in (3,2,4) outputs.
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For example, a rotation array of shape (3,2) and a vector
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array of shape (2,4) result in (3,2,4) outputs.
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with_symmetry : bool, optional
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with_symmetry : bool, optional
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Calculate all N symmetrically equivalent vectors.
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Calculate all N symmetrically equivalent vectors.
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Defaults to False.
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normalize : bool, optional
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Normalize output vector.
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Defaults to True.
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Returns
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Returns
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-------
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-------
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vector : numpy.ndarray, shape (...,3) or (...,N,3)
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vector : numpy.ndarray, shape (...,3) or (...,N,3)
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Lab frame vector (or vectors if with_symmetry) along [uvw] direction or (hkl) plane normal.
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Lab frame vector (or vectors if with_symmetry) along
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[uvw] direction or (hkl) plane normal.
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"""
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"""
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v = self.to_frame(uvw=uvw,hkl=hkl)
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v = self.to_frame(uvw=uvw,hkl=hkl)
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blend = util.shapeblender(self.shape,v.shape[:-1])
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blend = util.shapeblender(self.shape,v.shape[:-1])
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if normalize:
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v /= np.linalg.norm(v,axis=-1,keepdims=len(v.shape)>1)
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if with_symmetry:
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if with_symmetry:
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sym_ops = self.symmetry_operations
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sym_ops = self.symmetry_operations
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shape = v.shape[:-1]+sym_ops.shape
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shape = v.shape[:-1]+sym_ops.shape
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@ -1023,26 +1023,26 @@ class Result:
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@staticmethod
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@staticmethod
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def _add_pole(q,uvw,hkl,with_symmetry):
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def _add_pole(q,uvw,hkl,with_symmetry,normalize):
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c = q['meta']['c/a'] if 'c/a' in q['meta'] else 1
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c = q['meta']['c/a'] if 'c/a' in q['meta'] else 1
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brackets = ['[]','()','⟨⟩','{}'][(uvw is None)*1+with_symmetry*2]
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brackets = ['[]','()','⟨⟩','{}'][(uvw is None)*1+with_symmetry*2]
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label = 'p^' + '{}{} {} {}{}'.format(brackets[0],
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label = 'p^' + '{}{} {} {}{}'.format(brackets[0],
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*(uvw if uvw else hkl),
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*(uvw if uvw else hkl),
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brackets[-1],)
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brackets[-1],)
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pole = Orientation(q['data'],lattice=q['meta']['lattice'],a=1,c=c).to_pole(uvw=uvw,hkl=hkl,with_symmetry=with_symmetry)
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ori = Orientation(q['data'],lattice=q['meta']['lattice'],a=1,c=c)
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return {
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return {
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'data': pole,
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'data': ori.to_pole(uvw=uvw,hkl=hkl,with_symmetry=with_symmetry,normalize=normalize),
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'label': label,
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'label': label,
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'meta' : {
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'meta' : {
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'unit': '1',
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'unit': '1',
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'description': 'lab frame vector along lattice ' \
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'description': f'{"normalized " if normalize else ""}lab frame vector along lattice ' \
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+ ('direction' if uvw else 'plane') \
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+ ('direction' if uvw is not None else 'plane') \
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+ ('s' if with_symmetry else ''),
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+ ('s' if with_symmetry else ''),
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'creator': 'add_pole'
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'creator': 'add_pole'
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}
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}
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}
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}
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def add_pole(self,q='O',*,uvw=None,hkl=None,with_symmetry=False):
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def add_pole(self,q='O',*,uvw=None,hkl=None,with_symmetry=False,normalize=True):
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"""
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"""
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Add lab frame vector along lattice direction [uvw] or plane normal (hkl).
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Add lab frame vector along lattice direction [uvw] or plane normal (hkl).
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@ -1055,9 +1055,15 @@ class Result:
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Miller indices of crystallographic direction or plane normal.
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Miller indices of crystallographic direction or plane normal.
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with_symmetry : bool, optional
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with_symmetry : bool, optional
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Calculate all N symmetrically equivalent vectors.
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Calculate all N symmetrically equivalent vectors.
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Defaults to True.
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normalize : bool, optional
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Normalize output vector.
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Defaults to True.
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"""
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"""
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self._add_generic_pointwise(self._add_pole,{'q':q},{'uvw':uvw,'hkl':hkl,'with_symmetry':with_symmetry})
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self._add_generic_pointwise(self._add_pole,
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{'q':q},
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{'uvw':uvw,'hkl':hkl,'with_symmetry':with_symmetry,'normalize':normalize})
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@staticmethod
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@staticmethod
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@ -180,8 +180,8 @@ class TestOrientation:
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o = Orientation.from_directions(uvw=a,hkl=c,**kwargs)
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o = Orientation.from_directions(uvw=a,hkl=c,**kwargs)
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x = o.to_pole(uvw=a)
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x = o.to_pole(uvw=a)
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z = o.to_pole(hkl=c)
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z = o.to_pole(hkl=c)
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assert np.isclose(np.dot(x/np.linalg.norm(x),np.array([1,0,0])),1) \
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assert np.isclose(np.dot(x,np.array([1,0,0])),1) \
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and np.isclose(np.dot(z/np.linalg.norm(z),np.array([0,0,1])),1)
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and np.isclose(np.dot(z,np.array([0,0,1])),1)
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@pytest.mark.parametrize('function',[Orientation.from_random,
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@pytest.mark.parametrize('function',[Orientation.from_random,
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Orientation.from_quaternion,
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Orientation.from_quaternion,
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