new script setup_env.py to modify DAMASK_env files, will replace setup_shellrc.py
This commit is contained in:
Martin Diehl
parent
f73fdbfdd4
commit
65de581f72
|
|
@ -1,14 +1,12 @@
|
|||
# sets up an environment for DAMASK on csh
|
||||
# sets up an environment for DAMASK on tcsh
|
||||
# usage: source DAMASK_env.csh
|
||||
setenv DAMASK_ROOT $HOME/DAMASK
|
||||
setenv DAMASK_BIN $DAMASK_ROOT/bin
|
||||
setenv PYTHONPATH ${PYTHONPATH}:${DAMASK_ROOT}/lib
|
||||
set MAGIG=($_)
|
||||
set FILENAME=`readlink -f $called[2]`
|
||||
set LOCATION = `dirname $FILENAME`
|
||||
setenv DAMASK_ROOT ${LOCATION}
|
||||
setenv DAMASK_NUM_THREADS 2
|
||||
ulimit -s unlimited
|
||||
ulimit -c 0
|
||||
ulimit -v unlimited
|
||||
ulimit -m unlimited
|
||||
|
||||
# disable output in case of scp
|
||||
if($?prompt) then
|
||||
echo
|
||||
echo Düsseldorf Advanced Materials Simulation Kit - DAMASK
|
||||
echo Max-Planck-Institut für Eisenforschung, Düsseldorf
|
||||
|
|
@ -17,4 +15,12 @@ echo
|
|||
echo Preparing environment ...
|
||||
echo "DAMASK_ROOT=$DAMASK_ROOT"
|
||||
echo "DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
|
||||
|
||||
endif
|
||||
ulimit -s unlimited
|
||||
ulimit -c 0
|
||||
ulimit -v unlimited
|
||||
ulimit -m unlimited
|
||||
setenv DAMASK_BIN ${DAMASK_ROOT}:bin
|
||||
setenv PATH ${PATH}:${DAMASK_BIN}
|
||||
setenv PYTHONPATH ${PYTHONPATH}:${DAMASK_ROOT}/lib
|
||||
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}
|
||||
|
|
|
|||
|
|
@ -1,16 +1,10 @@
|
|||
# sets up an environment for DAMASK on bash
|
||||
# usage: source DAMASK_env.sh
|
||||
export DAMASK_ROOT=$HOME/DAMASK
|
||||
export DAMASK_BIN=$DAMASK_ROOT/bin
|
||||
export PYTHONPATH=${PYTHONPATH}:${DAMASK_ROOT}/lib
|
||||
LOCATION=$(readlink -f "`dirname $BASH_SOURCE`")
|
||||
export DAMASK_ROOT=${LOCATION}
|
||||
export DAMASK_NUM_THREADS=2
|
||||
ulimit -s unlimited
|
||||
ulimit -c 0
|
||||
ulimit -v unlimited
|
||||
ulimit -m unlimited
|
||||
|
||||
# disable output in case of scp
|
||||
[ -z "$PS1" ] && return
|
||||
if [ ! -z "$PS1" ]; then
|
||||
echo
|
||||
echo Düsseldorf Advanced Materials Simulation Kit - DAMASK
|
||||
echo Max-Planck-Institut für Eisenforschung, Düsseldorf
|
||||
|
|
@ -19,5 +13,12 @@ echo
|
|||
echo Preparing environment ...
|
||||
echo "DAMASK_ROOT=$DAMASK_ROOT"
|
||||
echo "DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
|
||||
|
||||
|
||||
fi
|
||||
ulimit -s unlimited
|
||||
ulimit -c 0
|
||||
ulimit -v unlimited
|
||||
ulimit -m unlimited
|
||||
export DAMASK_BIN=${DAMASK_ROOT}:bin
|
||||
export PATH=${PATH}:${DAMASK_BIN}
|
||||
export PYTHONPATH=${PYTHONPATH}:${DAMASK_ROOT}/lib
|
||||
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,166 @@
|
|||
#!/usr/bin/env python
|
||||
|
||||
import os,sys,string,re,platform
|
||||
from optparse import OptionParser
|
||||
|
||||
validShell = {\
|
||||
'bash': 'DAMASK_env.sh' ,
|
||||
'csh': 'DAMASK_env.csh',
|
||||
'windows': 'DAMASK_env.bat',
|
||||
}
|
||||
|
||||
env_order = ['DAMASK_ROOT','DAMASK_BIN','PATH','PYTHONPATH','LD_LIBRARY_PATH']
|
||||
environment = { 'DAMASK_ROOT':
|
||||
[{'delete':'',
|
||||
'substitute':'[DamaskRoot]',
|
||||
'append': False,
|
||||
},
|
||||
],
|
||||
'DAMASK_BIN':
|
||||
[{'delete':'',
|
||||
'substitute':'[os.path.join(DamaskRoot,"bin")]',
|
||||
'append': False,
|
||||
},
|
||||
],
|
||||
'PATH':
|
||||
[{'delete':'"${DAMASK_BIN}"',
|
||||
'substitute':'["${DAMASK_BIN}"]',
|
||||
'append': True,
|
||||
},
|
||||
],
|
||||
'PYTHONPATH':
|
||||
[{'delete':'"${DAMASK_ROOT}/lib"',
|
||||
'substitute':'["${DAMASK_ROOT}/lib"]',
|
||||
'append': True,
|
||||
},
|
||||
],
|
||||
'LD_LIBRARY_PATH':
|
||||
[{'activate': 'pathInfo["acml"]',
|
||||
'delete': '"acml"', # what keywords trigger item deletion from existing path
|
||||
'substitute':'[os.path.join(pathInfo["acml"],"ifort64_mp/lib"),\
|
||||
os.path.join(pathInfo["acml"],"ifort64/lib"),\
|
||||
os.path.join(pathInfo["acml"],"gfortran64_mp/lib"),\
|
||||
os.path.join(pathInfo["acml"],"gfortran64/lib")]', # what to substitute for deleted path items
|
||||
'append': True, # whether new entries append to existing ${env}
|
||||
},
|
||||
{'activate': 'pathInfo["lapack"]',
|
||||
'delete': '[os.path.join(pathInfo["lapack"],"lib"),\
|
||||
os.path.join(pathInfo["lapack"],"lib64")]', # deleted current (same) entry
|
||||
'substitute':'[os.path.join(pathInfo["lapack"],"lib"),\
|
||||
os.path.join(pathInfo["lapack"],"lib64")]', # what to substitute for deleted path
|
||||
'append': True, # whether new entries append to existing ${env}
|
||||
},
|
||||
{'activate': 'pathInfo["fftw"]',
|
||||
'delete': '[os.path.join(pathInfo["fftw"],"lib")]', # deleted current (same) entry
|
||||
'substitute':'[os.path.join(pathInfo["fftw"],"lib")]', # what to substitute for deleted path items
|
||||
'append': True, # whether new entries append to existing ${env}
|
||||
},
|
||||
],
|
||||
}
|
||||
|
||||
parser = OptionParser(usage="%prog [options]", description = """
|
||||
Sets up your shell resource to be compatible with DAMASK.
|
||||
""" + string.replace('$Id: setup_shellrc.py 2126 2013-02-01 13:22:40Z MPIE\m.diehl $','\n','\\n')
|
||||
)
|
||||
|
||||
parser.add_option("-s","--shell", type="string",
|
||||
dest = "shell", \
|
||||
help = "type of shell, e.g. "+', '.join(validShell.keys())+" [%default]")
|
||||
|
||||
parser.set_defaults(shell = 'windows' if platform.system() == 'Windos' else 'bash')
|
||||
(options, args) = parser.parse_args()
|
||||
|
||||
pathInfo = {}
|
||||
|
||||
DamaskRoot = os.path.normpath(os.path.join(os.path.dirname(os.path.realpath(sys.argv[0])),'../'))
|
||||
try: # check for user-defined pathinfo
|
||||
file = open(os.path.join(DamaskRoot,'lib/pathinfo'))
|
||||
content = map(lambda string: string.strip(),file.readlines())
|
||||
file.close()
|
||||
for line in content:
|
||||
if not (line.startswith('#') or line == ''):
|
||||
items = line.split() + ['','']
|
||||
pathInfo[items[0].lower()] = {False: os.path.normpath(os.path.join(DamaskRoot,'lib/',items[1])),
|
||||
True: items[1]}[items[1] == '']
|
||||
except:
|
||||
pass
|
||||
|
||||
theShell = options.shell.lower()
|
||||
if theShell not in validShell:
|
||||
print('invalid shell %s, assuming bash', theShell)
|
||||
theShell='bash'
|
||||
|
||||
theSourceFile = validShell[theShell]
|
||||
thePath = os.path.join(DamaskRoot,theSourceFile)
|
||||
if os.path.exists(thePath):
|
||||
print('parsing existing %s'%thePath)
|
||||
|
||||
currentSourceFile = open(thePath)
|
||||
content = map(string.strip,currentSourceFile.readlines())
|
||||
currentSourceFile.close()
|
||||
|
||||
match = {}
|
||||
for var in env_order: match[var] = False
|
||||
|
||||
output = []
|
||||
|
||||
for line in content:
|
||||
for var in env_order:
|
||||
m = re.search(\
|
||||
{\
|
||||
'bash': r'^(.*? %s=)([^;]*)(.*)$'%var,
|
||||
'csh': r'^(\s*setenv\s+%s\s+)([^;]*)(.*)$'%var,
|
||||
'windows': r'^(\s*SET\s+%s\s+)([^;]*)(.*)$'%var #case insesitiv search + second % sign
|
||||
}[theShell],line)
|
||||
if m:
|
||||
n = re.search(r'(%s)'%var, line)
|
||||
o = re.search(r'(#)', line)
|
||||
if o:
|
||||
if o.start() < n.start():
|
||||
print 'skipped potential comment line, please check!'
|
||||
continue
|
||||
match[var] = True
|
||||
items = m.group(2).split(':')
|
||||
for piece in environment[var]:
|
||||
try:
|
||||
if 'activate' not in piece or eval(piece['activate']) != '':
|
||||
if piece['append']:
|
||||
if 'delete' in piece:
|
||||
killer = eval(piece['delete'])
|
||||
if type(killer) == str:
|
||||
items = [path for path in items if killer not in path]
|
||||
if type(killer) == list:
|
||||
items = [path for path in items if path not in killer]
|
||||
items += eval(piece['substitute'])
|
||||
else:
|
||||
items = eval(piece['substitute'])
|
||||
except:
|
||||
pass
|
||||
line = m.group(1)+':'.join(items)+m.group(3)
|
||||
|
||||
output.append(line)
|
||||
|
||||
for var in env_order:
|
||||
if not match[var]:
|
||||
items = ['${%s}'%var]
|
||||
for piece in environment[var]:
|
||||
try:
|
||||
if 'activate' not in piece or eval(piece['activate']) != '':
|
||||
if piece['append']:
|
||||
items += eval(piece['substitute'])
|
||||
else:
|
||||
items = eval(piece['substitute'])
|
||||
except:
|
||||
pass
|
||||
output.append({\
|
||||
'bash': 'export %s=%s'%(var,':'.join(items)),
|
||||
'csh': 'setenv %s %s'%(var,':'.join(items)),
|
||||
'windows': 'SET %s %s'%(var,':'.join(items)),
|
||||
}[theShell])
|
||||
|
||||
print('writing to %s'%thePath)
|
||||
newSourceFile = open(thePath,'w')
|
||||
newSourceFile.write('\n'.join(output)+'\n')
|
||||
newSourceFile.close()
|
||||
|
||||
|
||||
Loading…
Reference in New Issue