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[skip sc] wip: implementing mapping for HDF5

This commit is contained in:
Martin Diehl 2019-04-04 16:22:33 +02:00
parent 953acf9c71
commit 63e6d60949
3 changed files with 96 additions and 1 deletions
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2
src/CPFEM2.f90
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@ -72,9 +72,9 @@ subroutine CPFEM_initAll()
call FE_init
call mesh_init
call lattice_init
call material_init
call HDF5_utilities_init
call results_init
call material_init
call constitutive_init
call crystallite_init
call homogenization_init

4
src/material.f90
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@ -274,6 +274,7 @@ contains
!> material.config
!--------------------------------------------------------------------------------------------------
subroutine material_init
use results
use IO, only: &
IO_error
use debug, only: &
@ -409,6 +410,9 @@ subroutine material_init
enddo
enddo
enddo
call results_openJobFile
call results_closeJobFile
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

91
src/results.f90
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@ -55,6 +55,8 @@ subroutine results_init
call HDF5_addAttribute(resultsFile,'DAMASK',DAMASKVERSION)
call get_command(commandLine)
call HDF5_addAttribute(resultsFile,'call',trim(commandLine))
call HDF5_closeGroup(results_addGroup('mapping'))
call HDF5_closeGroup(results_addGroup('mapping/cellResults'))
call HDF5_closeFile(resultsFile)
end subroutine results_init
@ -303,6 +305,95 @@ subroutine results_writeTensorDataset_int(group,dataset,label,description,SIunit
end subroutine results_writeTensorDataset_int
!--------------------------------------------------------------------------------------------------
!> @brief adds the unique mapping from spatial position and constituent ID to results
!--------------------------------------------------------------------------------------------------
subroutine HDF5_mapping_phase(phaseAt,memberAt,label)
use numerics, only: &
worldrank, &
worldsize
integer, dimension(:,:), intent(in) :: phaseAt
integer, dimension(:,:,:), intent(in) :: memberAt
character(len=64), dimension(:), intent(in) :: label
integer, dimension(:,:), allocatable :: memberAt_global
integer, dimension(size(label),0:worldsize-1) :: members
integer, dimension(0:worldsize-1) :: writeSize
integer(HID_T) :: loc_id, dtype_id, dset_id, space_id, name_id, plist_id, dt5_id
integer(HID_T), dimension(size(memberAt,1)) :: position_id
integer(SIZE_T) :: typesize, type_size_string, type_size_int, type_size_compound
integer :: ierr, i
character(len=1) :: constituent_number
memberAt_global = reshape(memberAt,[size(memberAt,1),size(memberAt)/size(memberAt,1)])
!---------------------------------------------------------------------------------------------------
! property list for transfer properties (needed for MPI)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
!---------------------------------------------------------------------------------------------------
! compound type: name of phase section + position(s) within results array
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt5_id, ierr)
call h5tset_size_f(dt5_id, int(len(label(1)),SIZE_T), ierr)
call h5tget_size_f(dt5_id, type_size_string, ierr)
call h5tget_size_f(H5T_STD_I32LE, type_size_int, ierr)
type_size_compound = type_size_string + type_size_int*size(memberAt,1) ! total size of derived type
call h5tcreate_f(H5T_COMPOUND_F, type_size_compound, dtype_id, ierr)
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt5_id, ierr)
do i=1, size(memberAt,1)
write(constituent_number, '(i0)') i
call h5tinsert_f(dtype_id, "Index "//trim(constituent_number),type_size_string+(i-1)*type_size_int,&
H5T_STD_I32LE, ierr)
enddo
!--------------------------------------------------------------------------------------------------
! Create memory types for each component of the compound type
call h5tcreate_f(H5T_COMPOUND_F, int(type_size_string,SIZE_T), name_id, ierr)
call h5tinsert_f(name_id, "Name",0_SIZE_T, dt5_id, ierr)
do i=1, size(memberAt,1)
write(constituent_number, '(i0)') i
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id(i), ierr)
call h5tinsert_f(position_id(i), "Index "//trim(constituent_number), 0_SIZE_T, H5T_STD_I32LE, ierr)
enddo
!--------------------------------------------------------------------------------------------------
! Prepare MPI communication (transparent for non-MPI runs)
members = 0
do i=1, size(label)
members(i,worldrank) = count(memberAt == i) ! number of points/instance of this process
enddo
writeSize = 0
writeSize(worldrank) = sum(members(:,worldrank)) ! total number of points by this process
#ifdef PETSc
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
if (ierr < 0) call IO_error(1,ext_msg='IO_mappingConstituent: h5pset_dxpl_mpio_f')
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='IO_mappingConstituent: MPI_allreduce')
call MPI_allreduce(MPI_IN_PLACE,members,size(members),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894_pInt,ext_msg='IO_mappingConstituent: MPI_allreduce')
#endif
members(:,worldrank) = sum(members(:,0:worldrank-1),2) ! starting id for each instance of this process
loc_id = results_openGroup('/mapping/cellResults')
call HDF5_closeGroup(loc_id)
end subroutine
!!--------------------------------------------------------------------------------------------------
!!> @brief adds the unique mapping from spatial position and constituent ID to results
!!--------------------------------------------------------------------------------------------------