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DAMASK_EICMD
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updated to croaking, scriptID, IO-piping.

This commit is contained in:
Philip Eisenlohr 2014-06-06 09:43:28 +00:00
parent 01a0a0d0bb
commit 63c1a0a212
1 changed files with 28 additions and 25 deletions
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53
processing/post/addNorm.py
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@ -4,6 +4,9 @@
import os,re,sys,math,string,damask import os,re,sys,math,string,damask
from optparse import OptionParser, Option from optparse import OptionParser, Option
scriptID = '$Id$'
scriptName = scriptID.split()[1]
# ----------------------------- # -----------------------------
class extendableOption(Option): class extendableOption(Option):
# ----------------------------- # -----------------------------
@ -46,7 +49,7 @@ def normMax(object):
parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """ parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
Add column(s) containing norm of requested column(s) being either vectors or tensors. Add column(s) containing norm of requested column(s) being either vectors or tensors.
""" + string.replace('$Id$','\n','\\n') """ + string.replace(scriptID,'\n','\\n')
) )
normChoices = ['abs','frobenius','max'] normChoices = ['abs','frobenius','max']
@ -92,39 +95,37 @@ if options.special != None: datainfo['special']['label'] += options.special
files = [] files = []
if filenames == []: if filenames == []:
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout}) files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
else: else:
for name in filenames: for name in filenames:
if os.path.exists(name): if os.path.exists(name):
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')}) files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
# ------------------------------------------ loop over input files ---------------------------------------
#--- loop over input files ------------------------------------------------------------------------
for file in files: for file in files:
if file['name'] != 'STDIN': print file['name'] if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
table.head_read() # read ASCII header info table.head_read() # read ASCII header info
table.info_append(string.replace('$Id$','\n','\\n') + \ table.info_append(string.replace(scriptID,'\n','\\n') + '\t' + ' '.join(sys.argv[1:]))
'\t' + ' '.join(sys.argv[1:]))
# --------------- figure out columns to process # --------------- figure out columns to process
active = {} active = defaultdict(list)
column = {} column = defaultdict(dict)
head = []
for datatype,info in datainfo.items(): for datatype,info in datainfo.items():
for label in info['label']: for label in info['label']:
key = {True :'1_%s', foundIt = False
False:'%s' }[info['len']>1]%label for key in ['1_'+label,label]:
if key not in table.labels: if key in table.labels:
sys.stderr.write('column %s not found...\n'%key) foundIt = True
else: active[datatype].append(label)
if datatype not in active: active[datatype] = [] column[datatype][label] = table.labels.index(key) # remember columns of requested data
if datatype not in column: column[datatype] = {} table.labels_append('norm%s(%s)'%(options.norm.capitalize(),label)) # extend ASCII header with new labels
active[datatype].append(label) if not foundIt:
column[datatype][label] = table.labels.index(key) # remember columns of requested data file['croak'].write('column %s not found...\n'%label)
table.labels_append('norm%s(%s)'%(options.norm.capitalize(),label)) # extend ASCII header with new labels break
# ------------------------------------------ assemble header --------------------------------------- # ------------------------------------------ assemble header ---------------------------------------
@ -132,19 +133,21 @@ for file in files:
# ------------------------------------------ process data --------------------------------------- # ------------------------------------------ process data ---------------------------------------
while table.data_read(): # read next data line of ASCII table outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
for datatype,labels in active.items(): # loop over vector,tensor for datatype,labels in active.items(): # loop over vector,tensor
for label in labels: # loop over all requested norms for label in labels: # loop over all requested norms
eval("table.data_append(norm%s(map(float,table.data[column[datatype][label]:column[datatype][label]+datainfo[datatype]['len']])))"%options.norm.capitalize()) eval("table.data_append(norm%s(map(float,table.data[column[datatype][label]:column[datatype][label]+datainfo[datatype]['len']])))"%options.norm.capitalize())
table.data_write() # output processed line outputAlive = table.data_write() # output processed line
# ------------------------------------------ output result --------------------------------------- # ------------------------------------------ output result ---------------------------------------
table.output_flush() # just in case of buffered ASCII table outputAlive and table.output_flush() # just in case of buffered ASCII table
file['input'].close() # close input ASCII table file['input'].close() # close input ASCII table
if file['name'] != 'STDIN': if file['name'] != 'STDIN':
file['output'].close # close output ASCII table file['output'].close() # close output ASCII table
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new