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DAMASK_EICMD
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modernized, gracefully add NaN for out-of-bounds mapping

This commit is contained in:
Philip Eisenlohr 2016-08-11 14:23:29 -04:00
parent 6bdce9b332
commit 600731b15c
1 changed files with 11 additions and 7 deletions
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14
processing/post/addMapped.py
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@ -2,6 +2,7 @@
# -*- coding: UTF-8 no BOM -*- # -*- coding: UTF-8 no BOM -*-
import os,sys import os,sys
import numpy as np
from optparse import OptionParser from optparse import OptionParser
import damask import damask
@ -28,7 +29,7 @@ parser.add_option('-o','--offset',
parser.add_option('-l','--label', parser.add_option('-l','--label',
dest = 'label', dest = 'label',
action = 'extend', metavar = '<string LIST>', action = 'extend', metavar = '<string LIST>',
help='heading of column(s) to be mapped') help='column label(s) to be mapped')
parser.add_option('-a','--asciitable', parser.add_option('-a','--asciitable',
dest = 'asciitable', dest = 'asciitable',
type = 'string', metavar = 'string', type = 'string', metavar = 'string',
@ -49,12 +50,13 @@ if options.map is None:
if options.asciitable is not None and os.path.isfile(options.asciitable): if options.asciitable is not None and os.path.isfile(options.asciitable):
mappedTable = damask.ASCIItable(name = options.asciitable, mappedTable = damask.ASCIItable(name = options.asciitable,
buffered = False, readonly = True) buffered = False,
readonly = True)
mappedTable.head_read() # read ASCII header info of mapped table mappedTable.head_read() # read ASCII header info of mapped table
missing_labels = mappedTable.data_readArray(options.label) missing_labels = mappedTable.data_readArray(options.label)
if len(missing_labels) > 0: if len(missing_labels) > 0:
mappedTable.croak('column{} {} not found...'.format('s' if len(missing_labels) > 1 else '',', '.join(missing_labels))) damask.util.croak('column{} {} not found...'.format('s' if len(missing_labels) > 1 else '',', '.join(missing_labels)))
else: else:
parser.error('no mapped ASCIItable given.') parser.error('no mapped ASCIItable given.')
@ -64,8 +66,7 @@ else:
if filenames == []: filenames = [None] if filenames == []: filenames = [None]
for name in filenames: for name in filenames:
try: try: table = damask.ASCIItable(name = name,
table = damask.ASCIItable(name = name,
buffered = False) buffered = False)
except: continue except: continue
damask.util.report(scriptName,name) damask.util.report(scriptName,name)
@ -96,7 +97,10 @@ for name in filenames:
outputAlive = True outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table while outputAlive and table.data_read(): # read next data line of ASCII table
try:
table.data_append(mappedTable.data[int(round(float(table.data[mappedColumn])))+options.offset-1]) # add all mapped data types table.data_append(mappedTable.data[int(round(float(table.data[mappedColumn])))+options.offset-1]) # add all mapped data types
except IndexError:
table.data_append(np.nan*np.ones_like(mappedTable.data[0]))
outputAlive = table.data_write() # output processed line outputAlive = table.data_write() # output processed line
# ------------------------------------------ output finalization ----------------------------------- # ------------------------------------------ output finalization -----------------------------------