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DAMASK_EICMD
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Merge branch 'polishing-for-release' into 'development' 

Polishing for release

See merge request damask/DAMASK!322
This commit is contained in:
Sharan Roongta 2021-01-18 17:26:13 +01:00
parent c32b904172 7a7c0c2dfb
commit 5b9a2d7bf7
17 changed files with 143 additions and 233 deletions
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2
PRIVATE

@ -1 +1 @@
Subproject commit b1a31a79cc90d458494068a96cfd3e9497aa330c
Subproject commit 3ab1053b8c83248dc8654a22a3caea815c0813db

6
env/CONFIG vendored
View File

@ -1,5 +1,5 @@
# "set"-syntax needed only for tcsh (but works with bash and zsh)
set DAMASK_NUM_THREADS = 4
set OMP_NUM_THREADS = 4
set MSC_ROOT = /opt/msc
set MSC_VERSION = 2020
set MSC_ROOT = /opt/msc
set MSC_VERSION = 2020

54
env/DAMASK.csh vendored
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@ -1,54 +0,0 @@
# sets up an environment for DAMASK on tcsh
# usage: source DAMASK_env.csh
set CALLED=($_)
set ENV_ROOT=`dirname $CALLED[2]`
set DAMASK_ROOT=`python3 -c "import os,sys; print(os.path.realpath(os.path.expanduser(sys.argv[1])))" $ENV_ROOT"/../"`
source $ENV_ROOT/CONFIG
set path = ($DAMASK_ROOT/bin $path)
set SOLVER=`which DAMASK_grid`
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
set DAMASK_NUM_THREADS=1
endif
# currently, there is no information that unlimited stack size causes problems
# still, http://software.intel.com/en-us/forums/topic/501500 suggest to fix it
# more info https://jblevins.org/log/segfault
# https://stackoverflow.com/questions/79923/what-and-where-are-the-stack-and-heap
# http://superuser.com/questions/220059/what-parameters-has-ulimit
limit stacksize unlimited # maximum stack size (kB)
# disable output in case of scp
if ( $?prompt ) then
echo ''
echo Düsseldorf Advanced Materials Simulation Kit --- DAMASK
echo Max-Planck-Institut für Eisenforschung GmbH, Düsseldorf
echo https://damask.mpie.de
echo
echo Using environment with ...
echo "DAMASK $DAMASK_ROOT"
echo "Grid Solver $SOLVER"
if ( $?PETSC_DIR) then
echo "PETSc location $PETSC_DIR"
endif
if ( $?MSC_ROOT) then
echo "MSC.Marc/Mentat $MSC_ROOT"
endif
echo
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
echo `limit datasize`
echo `limit stacksize`
echo
endif
setenv DAMASK_NUM_THREADS $DAMASK_NUM_THREADS
if ( ! $?PYTHONPATH ) then
setenv PYTHONPATH $DAMASK_ROOT/python
else
setenv PYTHONPATH $DAMASK_ROOT/python:$PYTHONPATH
endif
setenv MSC_ROOT
setenv MSC_VERSION

10
env/DAMASK.sh vendored
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@ -38,7 +38,7 @@ PATH=${DAMASK_ROOT}/bin:$PATH
SOLVER=$(type -p DAMASK_grid || true 2>/dev/null)
[ "x$SOLVER" == "x" ] && SOLVER=$(blink 'Not found!')
[ "x$DAMASK_NUM_THREADS" == "x" ] && DAMASK_NUM_THREADS=1
[ "x$OMP_NUM_THREADS" == "x" ] && OMP_NUM_THREADS=1
# currently, there is no information that unlimited stack size causes problems
# still, http://software.intel.com/en-us/forums/topic/501500 suggest to fix it
@ -66,7 +66,7 @@ if [ ! -z "$PS1" ]; then
echo -n "MSC.Marc/Mentat "
[ -d $MSC_ROOT ] && echo $MSC_ROOT || blink $MSC_ROOT
echo
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
echo "Multithreading OMP_NUM_THREADS=$OMP_NUM_THREADS"
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
@ -86,11 +86,13 @@ if [ ! -z "$PS1" ]; then
echo
fi
export DAMASK_NUM_THREADS
export OMP_NUM_THREADS
export MSC_ROOT
export MSC_VERSION
export DAMASK_ROOT
export PYTHONPATH=$DAMASK_ROOT/python:$PYTHONPATH
for var in BASE STAT SOLVER BRANCH; do
unset "${var}"
done
unset "ENV_ROOT"
unset "DAMASK_ROOT"

10
env/DAMASK.zsh vendored
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@ -30,7 +30,7 @@ PATH=${DAMASK_ROOT}/bin:$PATH
SOLVER=$(which DAMASK_grid || true 2>/dev/null)
[[ "x$SOLVER" == "x" ]] && SOLVER=$(blink 'Not found!')
[[ "x$DAMASK_NUM_THREADS" == "x" ]] && DAMASK_NUM_THREADS=1
[[ "x$OMP_NUM_THREADS" == "x" ]] && OMP_NUM_THREADS=1
# currently, there is no information that unlimited stack size causes problems
# still, http://software.intel.com/en-us/forums/topic/501500 suggest to fix it
@ -60,7 +60,7 @@ if [ ! -z "$PS1" ]; then
echo -n "MSC.Marc/Mentat "
[ -d $MSC_ROOT ] && echo $MSC_ROOT || blink $MSC_ROOT
echo
echo "Multithreading DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
echo "Multithreading OMP_NUM_THREADS=$OMP_NUM_THREADS"
echo -n "heap size "
[[ "$(ulimit -d)" == "unlimited" ]] \
&& echo "unlimited" \
@ -80,11 +80,13 @@ if [ ! -z "$PS1" ]; then
echo
fi
export DAMASK_NUM_THREADS
export OMP_NUM_THREADS
export MSC_ROOT
export MSC_VERSION
export DAMASK_ROOT
export PYTHONPATH=$DAMASK_ROOT/python:$PYTHONPATH
for var in SOLVER BRANCH; do
unset "${var}"
done
unset "ENV_ROOT"
unset "DAMASK_ROOT"

16
installation/mods_MarcMentat/apply_DAMASK_modifications.py
View File

@ -5,13 +5,9 @@ import glob
import argparse
from pathlib import Path
import damask
msc_version = float(damask.environment.options['MSC_VERSION'])
if int(msc_version) == msc_version:
msc_version = int(msc_version)
msc_root = Path(damask.environment.options['MSC_ROOT'])
damask_root = damask.environment.root_dir
msc_version = os.environ['MSC_VERSION']
msc_root = Path(os.environ['MSC_ROOT'])
damask_root = Path(os.environ['DAMASK_ROOT'])
parser = argparse.ArgumentParser(
description='Apply DAMASK modification to MSC.Marc/Mentat',
@ -24,7 +20,7 @@ def copy_and_replace(in_file,dst):
with open(in_file) as f:
content = f.read()
content = content.replace('%INSTALLDIR%',str(msc_root))
content = content.replace('%VERSION%',str(msc_version))
content = content.replace('%VERSION%', msc_version)
content = content.replace('%EDITOR%', parser.parse_args().editor)
with open(dst/Path(in_file).name,'w') as f:
f.write(content)
@ -53,8 +49,8 @@ for in_file in glob.glob(str(src/'job_run.ms')):
print('compiling Mentat menu binaries...')
executable = str(msc_root/f'mentat{msc_version}/bin/mentat')
menu_file = str(msc_root/f'mentat{msc_version}/menus/linux64/main.msb')
executable = msc_root/f'mentat{msc_version}/bin/mentat'
menu_file = msc_root/f'mentat{msc_version}/menus/linux64/main.msb'
os.system(f'xvfb-run {executable} -compile {menu_file}')

8
installation/symlink_Processing.py
View File

@ -3,11 +3,9 @@
# Makes postprocessing routines accessible from everywhere.
import sys
from pathlib import Path
import os
import damask
env = damask.Environment()
bin_dir = env.root_dir/Path('bin')
bin_dir = Path(os.environ['DAMASK_ROOT'])/'bin'
if not bin_dir.exists():
bin_dir.mkdir()
@ -15,7 +13,7 @@ if not bin_dir.exists():
sys.stdout.write('\nsymbolic linking...\n')
for sub_dir in ['pre','post']:
the_dir = env.root_dir/Path('processing')/Path(sub_dir)
the_dir = Path(os.environ['DAMASK_ROOT'])/'processing'/sub_dir
for the_file in the_dir.glob('*.py'):
src = the_dir/the_file

8
processing/post/DADF5_postResults.py
View File

@ -41,15 +41,15 @@ for filename in options.filenames:
table = damask.Table(np.ones(np.product(results.cells),dtype=int)*int(inc[3:]),{'inc':(1,)})\
.add('pos',coords.reshape(-1,3))
results.pick('homogenizations',False)
results.pick('phases',True)
results.view('homogenizations',False)
results.view('phases',True)
for label in options.con:
x = results.get_dataset_location(label)
if len(x) != 0:
table = table.add(label,results.read_dataset(x,0,plain=True).reshape(results.cells.prod(),-1))
results.pick('phases',False)
results.pick('homogenizations',True)
results.view('phases',False)
results.view('homogenizations',True)
for label in options.mat:
x = results.get_dataset_location(label)
if len(x) != 0:

3
python/damask/__init__.py
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@ -16,8 +16,6 @@ with open(_Path(__file__).parent/_Path('VERSION')) as _f:
__version__ = version
# make classes directly accessible as damask.Class
from ._environment import Environment as _ # noqa
environment = _()
from . import util # noqa
from . import seeds # noqa
from . import tensor # noqa
@ -38,7 +36,6 @@ from ._result import Result # noqa
# deprecated
Environment = _
from ._asciitable import ASCIItable # noqa
from ._test import Test # noqa
from .util import extendableOption # noqa

41
python/damask/_environment.py
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@ -1,41 +0,0 @@
import os
from pathlib import Path
class Environment:
@property
def screen_size(self):
try:
import wx
_ = wx.App(False) # noqa
width, height = wx.GetDisplaySize()
except ImportError:
try:
import tkinter
tk = tkinter.Tk()
width = tk.winfo_screenwidth()
height = tk.winfo_screenheight()
tk.destroy()
except Exception as e:
width = 1024
height = 768
return (width,height)
@property
def options(self):
options = {}
for item in ['DAMASK_NUM_THREADS',
'MSC_ROOT',
'MSC_VERSION',
]:
options[item] = os.environ[item] if item in os.environ else None
return options
@property
def root_dir(self):
"""Return DAMASK root path."""
return Path(__file__).parents[2]

15
python/damask/_grid.py
View File

@ -1,7 +1,7 @@
import copy
import multiprocessing as mp
from functools import partial
from os import path
import os
import warnings
import numpy as np
@ -10,7 +10,6 @@ import h5py
from scipy import ndimage, spatial
from vtk.util.numpy_support import vtk_to_numpy as vtk_to_np
from . import environment
from . import VTK
from . import util
from . import grid_filters
@ -278,14 +277,14 @@ class Grid:
"""
root_dir ='DataContainers'
f = h5py.File(fname, 'r')
g = path.join(root_dir,base_group,'_SIMPL_GEOMETRY')
cells = f[path.join(g,'DIMENSIONS')][()]
size = f[path.join(g,'SPACING')][()] * cells
origin = f[path.join(g,'ORIGIN')][()]
g = os.path.join(root_dir,base_group,'_SIMPL_GEOMETRY')
cells = f[os.path.join(g,'DIMENSIONS')][()]
size = f[os.path.join(g,'SPACING')][()] * cells
origin = f[os.path.join(g,'ORIGIN')][()]
ma = np.arange(cells.prod(),dtype=int) \
if point_data is None else \
np.reshape(f[path.join(root_dir,base_group,point_data,material)],cells.prod())
np.reshape(f[os.path.join(root_dir,base_group,point_data,material)],cells.prod())
return Grid(ma.reshape(cells,order='F'),size,origin,util.execution_stamp('Grid','load_DREAM3D'))
@ -355,7 +354,7 @@ class Grid:
seeds_p = seeds
coords = grid_filters.coordinates0_point(cells,size).reshape(-1,3)
pool = mp.Pool(processes = int(environment.options['DAMASK_NUM_THREADS']))
pool = mp.Pool(int(os.environ.get('OMP_NUM_THREADS',1)))
result = pool.map_async(partial(Grid._find_closest_seed,seeds_p,weights_p), [coord for coord in coords])
pool.close()
pool.join()

101
python/damask/_result.py
View File

@ -80,12 +80,12 @@ class Result:
self.out_type_ho += f['/'.join([self.increments[0],'homogenization',m])].keys()
self.out_type_ho = list(set(self.out_type_ho)) # make unique
self.selection = {'increments': self.increments,
'phases': self.phases,
'homogenizations': self.homogenizations,
'out_type_ph': self.out_type_ph,
'out_type_ho': self.out_type_ho
}
self.visible = {'increments': self.increments,
'phases': self.phases,
'homogenizations': self.homogenizations,
'out_type_ph': self.out_type_ph,
'out_type_ho': self.out_type_ho
}
self.fname = Path(fname).absolute()
@ -94,23 +94,23 @@ class Result:
def __repr__(self):
"""Show summary of file content."""
all_selected_increments = self.selection['increments']
visible_increments = self.visible['increments']
self.pick('increments',all_selected_increments[0:1])
self.view('increments',visible_increments[0:1])
first = self.list_data()
self.pick('increments',all_selected_increments[-1:])
last = '' if len(all_selected_increments) < 2 else self.list_data()
self.view('increments',visible_increments[-1:])
last = '' if len(visible_increments) < 2 else self.list_data()
self.pick('increments',all_selected_increments)
self.view('increments',visible_increments)
in_between = '' if len(all_selected_increments) < 3 else \
''.join([f'\n{inc}\n ...\n' for inc in all_selected_increments[1:-2]])
in_between = '' if len(visible_increments) < 3 else \
''.join([f'\n{inc}\n ...\n' for inc in visible_increments[1:-2]])
return util.srepr(first + in_between + last)
def _manage_selection(self,action,what,datasets):
def _manage_view(self,action,what,datasets):
"""
Manages the visibility of the groups.
@ -119,7 +119,7 @@ class Result:
action : str
Select from 'set', 'add', and 'del'.
what : str
Attribute to change (must be from self.selection).
Attribute to change (must be in self.visible).
datasets : list of str or bool
Name of datasets as list, supports ? and * wildcards.
True is equivalent to [*], False is equivalent to []
@ -156,18 +156,18 @@ class Result:
choice.append(self.increments[idx+1])
valid = [e for e_ in [glob.fnmatch.filter(getattr(self,what),s) for s in choice] for e in e_]
existing = set(self.selection[what])
existing = set(self.visible[what])
if action == 'set':
self.selection[what] = valid
self.visible[what] = valid
elif action == 'add':
add = existing.union(valid)
add_sorted = sorted(add, key=natural_sort)
self.selection[what] = add_sorted
self.visible[what] = add_sorted
elif action == 'del':
diff = existing.difference(valid)
diff_sorted = sorted(diff, key=natural_sort)
self.selection[what] = diff_sorted
self.visible[what] = diff_sorted
def _get_attribute(self,path,attr):
@ -245,72 +245,72 @@ class Result:
def iterate(self,what):
"""
Iterate over selection items by setting each one selected.
Iterate over visible items and view them independently.
Parameters
----------
what : str
Attribute to change (must be from self.selection).
Attribute to change (must be from self.visible).
"""
datasets = self.selection[what]
last_selection = datasets.copy()
datasets = self.visible[what]
last_view = datasets.copy()
for dataset in datasets:
if last_selection != self.selection[what]:
self._manage_selection('set',what,datasets)
if last_view != self.visible[what]:
self._manage_view('set',what,datasets)
raise Exception
self._manage_selection('set',what,dataset)
last_selection = self.selection[what]
self._manage_view('set',what,dataset)
last_view = self.visible[what]
yield dataset
self._manage_selection('set',what,datasets)
self._manage_view('set',what,datasets)
def pick(self,what,datasets):
def view(self,what,datasets):
"""
Set selection.
Set view.
Parameters
----------
what : str
attribute to change (must be from self.selection)
attribute to change (must be from self.visible)
datasets : list of str or bool
name of datasets as list, supports ? and * wildcards.
True is equivalent to [*], False is equivalent to []
"""
self._manage_selection('set',what,datasets)
self._manage_view('set',what,datasets)
def pick_more(self,what,datasets):
def view_more(self,what,datasets):
"""
Add to selection.
Add to view.
Parameters
----------
what : str
attribute to change (must be from self.selection)
attribute to change (must be from self.visible)
datasets : list of str or bool
name of datasets as list, supports ? and * wildcards.
True is equivalent to [*], False is equivalent to []
"""
self._manage_selection('add',what,datasets)
self._manage_view('add',what,datasets)
def pick_less(self,what,datasets):
def view_less(self,what,datasets):
"""
Delete from selection.
Delete from view.
Parameters
----------
what : str
attribute to change (must be from self.selection)
attribute to change (must be from self.visible)
datasets : list of str or bool
name of datasets as list, supports ? and * wildcards.
True is equivalent to [*], False is equivalent to []
"""
self._manage_selection('del',what,datasets)
self._manage_view('del',what,datasets)
def rename(self,name_old,name_new):
@ -1134,8 +1134,7 @@ class Result:
"""
chunk_size = 1024**2//8
num_threads = damask.environment.options['DAMASK_NUM_THREADS']
pool = mp.Pool(int(num_threads) if num_threads is not None else None)
pool = mp.Pool(int(os.environ.get('OMP_NUM_THREADS',1)))
lock = mp.Manager().Lock()
groups = self.groups_with_datasets(datasets.values())
@ -1190,8 +1189,8 @@ class Result:
"""
Write XDMF file to directly visualize data in DADF5 file.
This works only for scalar, 3-vector and 3x3-tensor data.
Selection is not taken into account.
The view is not taken into account, i.e. the content of the
whole file will be included.
"""
if self.N_constituents != 1 or len(self.phases) != 1 or not self.structured:
raise TypeError('XDMF output requires homogeneous grid')
@ -1320,10 +1319,10 @@ class Result:
N_digits = int(np.floor(np.log10(max(1,int(self.increments[-1][3:])))))+1
for inc in util.show_progress(self.iterate('increments'),len(self.selection['increments'])):
for inc in util.show_progress(self.iterate('increments'),len(self.visible['increments'])):
picked_backup_ho = self.selection['homogenizations'].copy()
self.pick('homogenizations',False)
viewed_backup_ho = self.visible['homogenizations'].copy()
self.view('homogenizations',False)
for label in (labels if isinstance(labels,list) else [labels]):
for o in self.iterate('out_type_ph'):
for c in range(self.N_constituents):
@ -1343,10 +1342,10 @@ class Result:
ph_name = re.compile(r'(?<=(phase\/))(.*?)(?=(mechanics))') # identify phase name
dset_name = prefix+re.sub(ph_name,r'',paths[0].split('/',1)[1]) # remove phase name
v.add(array,dset_name+f' / {self._get_attribute(paths[0],"Unit")}')
self.pick('homogenizations',picked_backup_ho)
self.view('homogenizations',viewed_backup_ho)
picked_backup_ph = self.selection['phases'].copy()
self.pick('phases',False)
viewed_backup_ph = self.visible['phases'].copy()
self.view('phases',False)
for label in (labels if isinstance(labels,list) else [labels]):
for _ in self.iterate('out_type_ho'):
paths = self.get_dataset_location(label)
@ -1354,7 +1353,7 @@ class Result:
continue
array = self.read_dataset(paths)
v.add(array,paths[0].split('/',1)[1]+f' / {self._get_attribute(paths[0],"Unit")}')
self.pick('phases',picked_backup_ph)
self.view('phases',viewed_backup_ph)
u = self.read_dataset(self.get_dataset_location('u_n' if mode.lower() == 'cell' else 'u_p'))
v.add(u,'u')

3
python/damask/_test.py
View File

@ -5,6 +5,7 @@ import logging
import logging.config
from collections.abc import Iterable
from optparse import OptionParser
from pathlib import Path
import numpy as np
@ -180,7 +181,7 @@ class Test:
def fileInRoot(self,dir,file):
"""Path to a file in the root directory of DAMASK."""
return str(damask.environment.root_dir/dir/file)
return str(Path(os.environ['DAMASK_ROOT'])/dir/file)
def fileInReference(self,file):

20
python/damask/_vtk.py
View File

@ -10,7 +10,6 @@ from vtk.util.numpy_support import numpy_to_vtkIdTypeArray as np_to_vtkIdTypeArr
from vtk.util.numpy_support import vtk_to_numpy as vtk_to_np
from . import util
from . import environment
from . import Table
@ -348,6 +347,23 @@ class VTK:
See http://compilatrix.com/article/vtk-1 for further ideas.
"""
def screen_size():
try:
import wx
_ = wx.App(False) # noqa
width, height = wx.GetDisplaySize()
except ImportError:
try:
import tkinter
tk = tkinter.Tk()
width = tk.winfo_screenwidth()
height = tk.winfo_screenheight()
tk.destroy()
except Exception as e:
width = 1024
height = 768
return (width,height)
mapper = vtk.vtkDataSetMapper()
mapper.SetInputData(self.vtk_data)
actor = vtk.vtkActor()
@ -361,7 +377,7 @@ class VTK:
ren.AddActor(actor)
ren.SetBackground(0.2,0.2,0.2)
window.SetSize(environment.screen_size[0],environment.screen_size[1])
window.SetSize(screen_size[0],screen_size[1])
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(window)

15
python/damask/solver/_marc.py
View File

@ -2,14 +2,13 @@ import subprocess
import shlex
import re
import io
import os
from pathlib import Path
from .. import environment
class Marc:
"""Wrapper to run DAMASK with MSCMarc."""
def __init__(self,version=environment.options['MSC_VERSION']):
def __init__(self,version=os.environ['MSC_VERSION']):
"""
Create a Marc solver object.
@ -25,9 +24,7 @@ class Marc:
@property
def library_path(self):
path_MSC = environment.options['MSC_ROOT']
path_lib = Path(f'{path_MSC}/mentat{self.version}/shlib/linux64')
path_lib = Path(f'{os.environ["MSC_ROOT"]}/mentat{self.version}/shlib/linux64')
if not path_lib.is_dir():
raise FileNotFoundError(f'library path "{path_lib}" not found')
@ -37,9 +34,7 @@ class Marc:
@property
def tools_path(self):
path_MSC = environment.options['MSC_ROOT']
path_tools = Path(f'{path_MSC}/marc{self.version}/tools')
path_tools = Path(f'{os.environ["MSC_ROOT"]}/marc{self.version}/tools')
if not path_tools.is_dir():
raise FileNotFoundError(f'tools path "{path_tools}" not found')
@ -54,7 +49,7 @@ class Marc:
optimization = '',
):
usersub = environment.root_dir/'src/DAMASK_marc'
usersub = Path(os.environ['DAMASK_ROOT'])/'src/DAMASK_marc'
usersub = usersub.parent/(usersub.name + ('.f90' if compile else '.marc'))
if not usersub.is_file():
raise FileNotFoundError(f'subroutine ({"source" if compile else "binary"}) "{usersub}" not found')

44
python/tests/test_Result.py
View File

@ -21,7 +21,7 @@ def default(tmp_path,ref_path):
fname = '12grains6x7x8_tensionY.hdf5'
shutil.copy(ref_path/fname,tmp_path)
f = Result(tmp_path/fname)
f.pick('times',20.0)
f.view('times',20.0)
return f
@pytest.fixture
@ -43,56 +43,56 @@ class TestResult:
print(default)
def test_pick_all(self,default):
default.pick('increments',True)
def test_view_all(self,default):
default.view('increments',True)
a = default.get_dataset_location('F')
default.pick('increments','*')
default.view('increments','*')
b = default.get_dataset_location('F')
default.pick('increments',default.incs_in_range(0,np.iinfo(int).max))
default.view('increments',default.incs_in_range(0,np.iinfo(int).max))
c = default.get_dataset_location('F')
default.pick('times',True)
default.view('times',True)
d = default.get_dataset_location('F')
default.pick('times','*')
default.view('times','*')
e = default.get_dataset_location('F')
default.pick('times',default.times_in_range(0.0,np.inf))
default.view('times',default.times_in_range(0.0,np.inf))
f = default.get_dataset_location('F')
assert a == b == c == d == e ==f
@pytest.mark.parametrize('what',['increments','times','phases']) # ToDo: discuss homogenizations
def test_pick_none(self,default,what):
default.pick(what,False)
def test_view_none(self,default,what):
default.view(what,False)
a = default.get_dataset_location('F')
default.pick(what,[])
default.view(what,[])
b = default.get_dataset_location('F')
assert a == b == []
@pytest.mark.parametrize('what',['increments','times','phases']) # ToDo: discuss homogenizations
def test_pick_more(self,default,what):
default.pick(what,False)
default.pick_more(what,'*')
def test_view_more(self,default,what):
default.view(what,False)
default.view_more(what,'*')
a = default.get_dataset_location('F')
default.pick(what,True)
default.view(what,True)
b = default.get_dataset_location('F')
assert a == b
@pytest.mark.parametrize('what',['increments','times','phases']) # ToDo: discuss homogenizations
def test_pick_less(self,default,what):
default.pick(what,True)
default.pick_less(what,'*')
def test_view_less(self,default,what):
default.view(what,True)
default.view_less(what,'*')
a = default.get_dataset_location('F')
default.pick(what,False)
default.view(what,False)
b = default.get_dataset_location('F')
assert a == b == []
def test_pick_invalid(self,default):
def test_view_invalid(self,default):
with pytest.raises(AttributeError):
default.pick('invalid',True)
default.view('invalid',True)
def test_add_absolute(self,default):
default.add_absolute('F_e')
@ -307,7 +307,7 @@ class TestResult:
@pytest.mark.parametrize('overwrite',['off','on'])
def test_add_overwrite(self,default,overwrite):
default.pick('times',default.times_in_range(0,np.inf)[-1])
default.view('times',default.times_in_range(0,np.inf)[-1])
default.add_stress_Cauchy()
loc = default.get_dataset_location('sigma')

20
src/parallelization.f90
View File

@ -32,7 +32,7 @@ contains
subroutine parallelization_init
integer :: err, typeSize
!$ integer :: got_env, DAMASK_NUM_THREADS, threadLevel
!$ integer :: got_env, OMP_NUM_THREADS, threadLevel
!$ character(len=6) NumThreadsString
#ifdef PETSc
PetscErrorCode :: petsc_err
@ -87,19 +87,19 @@ call MPI_Comm_rank(PETSC_COMM_WORLD,worldrank,err)
open(OUTPUT_UNIT,file='/dev/null',status='replace') ! close() alone will leave some temp files in cwd
endif
!$ call get_environment_variable(name='DAMASK_NUM_THREADS',value=NumThreadsString,STATUS=got_env)
!$ call get_environment_variable(name='OMP_NUM_THREADS',value=NumThreadsString,STATUS=got_env)
!$ if(got_env /= 0) then
!$ print*, 'Could not determine value of $DAMASK_NUM_THREADS'
!$ DAMASK_NUM_THREADS = 1_pI32
!$ print*, 'Could not determine value of $OMP_NUM_THREADS'
!$ OMP_NUM_THREADS = 1_pI32
!$ else
!$ read(NumThreadsString,'(i6)') DAMASK_NUM_THREADS
!$ if (DAMASK_NUM_THREADS < 1_pI32) then
!$ print*, 'Invalid DAMASK_NUM_THREADS: '//trim(NumThreadsString)
!$ DAMASK_NUM_THREADS = 1_pI32
!$ read(NumThreadsString,'(i6)') OMP_NUM_THREADS
!$ if (OMP_NUM_THREADS < 1_pI32) then
!$ print*, 'Invalid OMP_NUM_THREADS: '//trim(NumThreadsString)
!$ OMP_NUM_THREADS = 1_pI32
!$ endif
!$ endif
!$ print'(a,i2)', ' DAMASK_NUM_THREADS: ',DAMASK_NUM_THREADS
!$ call omp_set_num_threads(DAMASK_NUM_THREADS)
!$ print'(a,i2)', ' OMP_NUM_THREADS: ',OMP_NUM_THREADS
!$ call omp_set_num_threads(OMP_NUM_THREADS)
end subroutine parallelization_init