small polishing

python/damask/util.py

@@ -93,7 +93,7 @@ def strikeout(what):
 
 
 def execute(cmd,
-            streamIn = None,
+            stream_in = None,
             wd = './',
             env = None):
     """
@@ -103,7 +103,7 @@ def execute(cmd,
     ----------
     cmd : str
         Command to be executed.
-    streanIn :, optional
+    stream_in : file object, optional
         Input (via pipe) for executed process.
     wd : str, optional
         Working directory of process. Defaults to ./ .
@@ -119,14 +119,14 @@ def execute(cmd,
                                stderr = subprocess.PIPE,
                                stdin  = subprocess.PIPE,
                                env = myEnv)
-    out,error = [i for i in (process.communicate() if streamIn is None
+    stdout, stderr = [i for i in (process.communicate() if stream_in is None
-                                                   else process.communicate(streamIn.read().encode('utf-8')))]
+                             else process.communicate(stream_in.read().encode('utf-8')))]
     os.chdir(initialPath)
-    out   = out.decode('utf-8').replace('\x08','')
+    stdout = stdout.decode('utf-8').replace('\x08','')
-    error = error.decode('utf-8').replace('\x08','')
+    stderr = stderr.decode('utf-8').replace('\x08','')
     if process.returncode != 0:
         raise RuntimeError('{} failed with returncode {}'.format(cmd,process.returncode))
-    return out,error
+    return stdout, stderr
 
 
 def show_progress(iterable,N_iter=None,prefix='',bar_length=50):

python/tests/test_Rotation.py

@@ -950,14 +950,14 @@ class TestRotation:
 
     def test_rotate_inverse(self):
         R = Rotation.from_random()
-        assert np.allclose(np.eye(3),(R.inversed()@R).as_matrix())
+        assert np.allclose(np.eye(3),(~R@R).as_matrix())
 
     @pytest.mark.parametrize('data',[np.random.rand(3),
                                      np.random.rand(3,3),
                                      np.random.rand(3,3,3,3)])
     def test_rotate_inverse_array(self,data):
         R = Rotation.from_random()
-        assert np.allclose(data,R.inversed()@(R@data))
+        assert np.allclose(data,~R@(R@data))
 
     @pytest.mark.parametrize('data',[np.random.rand(4),
                                      np.random.rand(3,2),

python/tests/test_util.py

@@ -0,0 +1,11 @@
+from damask import util
+
+class TestUtil:
+
+    def test_execute_direct(self):
+        out,err = util.execute('echo test')
+        assert out=='test\n' and err==''
+    
+    def test_execute_env(self):
+        out,err = util.execute('sh -c "echo $test_for_execute"',env={'test_for_execute':'test'})
+        assert out=='test\n' and err==''

src/discretization.f90

@@ -49,7 +49,7 @@ subroutine discretization_init(homogenizationAt,microstructureAt,&
     IPcoords0, &
     NodeCoords0
   integer, optional,           intent(in) :: &
-    sharedNodesBegin                                                                                ! index of first node shared among different processes (MPI)
+    sharedNodesBegin                                                                                !< index of first node shared among different processes (MPI)
 
   write(6,'(/,a)') ' <<<+-  discretization init  -+>>>'; flush(6)