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initializing and closing the HDF5 library

This commit is contained in:
Martin Diehl 2018-10-09 14:13:51 +02:00
parent e7e0cf7118
commit 48403c37b7
3 changed files with 25 additions and 19 deletions
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3
src/CPFEM2.f90
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@ -37,6 +37,8 @@ subroutine CPFEM_initAll(el,ip)
mesh_init mesh_init
use material, only: & use material, only: &
material_init material_init
use HDF5_utilities, only: &
HDF5_utilities_init
use lattice, only: & use lattice, only: &
lattice_init lattice_init
use constitutive, only: & use constitutive, only: &
@ -72,6 +74,7 @@ subroutine CPFEM_initAll(el,ip)
call mesh_init(ip, el) ! pass on coordinates to alter calcMode of first ip call mesh_init(ip, el) ! pass on coordinates to alter calcMode of first ip
call lattice_init call lattice_init
call material_init call material_init
call HDF5_utilities_init
call constitutive_init call constitutive_init
call crystallite_init call crystallite_init
call homogenization_init call homogenization_init

31
src/HDF5_utilities.f90
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@ -58,8 +58,19 @@ subroutine HDF5_Utilities_init
write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>' write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>'
#include "compilation_info.f90" #include "compilation_info.f90"
currentInc = -1_pInt !currentInc = -1_pInt ToDo
call HDF5_createJobFile !call HDF5_createJobFile ToDo
!--------------------------------------------------------------------------------------------------
!initialize HDF5 library and check if integer and float type size match
call h5open_f(hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5open_f')
call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
if (int(pInt,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pInt does not match H5T_NATIVE_INTEGER')
call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
if (int(pReal,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pReal does not match H5T_NATIVE_DOUBLE')
end subroutine HDF5_Utilities_init end subroutine HDF5_Utilities_init
@ -74,23 +85,11 @@ subroutine HDF5_createJobFile
implicit none implicit none
integer :: hdferr integer :: hdferr
integer(SIZE_T) :: typeSize
character(len=1024) :: path character(len=1024) :: path
#ifdef PETSc #ifdef PETSc
#include <petsc/finclude/petscsys.h> #include <petsc/finclude/petscsys.h>
#endif #endif
!--------------------------------------------------------------------------------------------------
!initialize HDF5 library and check if integer and float type size match
call h5open_f(hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5open_f')
call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
if (int(pInt,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pInt does not match H5T_NATIVE_INTEGER')
call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
if (int(pReal,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pReal does not match H5T_NATIVE_DOUBLE')
#ifdef PETSc #ifdef PETSc
call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr) call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
@ -157,7 +156,7 @@ subroutine HDF5_closeJobFile()
call HDF5_removeLink('current') call HDF5_removeLink('current')
call h5fclose_f(resultsFile,hdferr) call h5fclose_f(resultsFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeJobFile: h5fclose_f',el=hdferr) if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeJobFile: h5fclose_f',el=hdferr)
call h5close_f(hdferr) ! call h5close_f(hdferr)
end subroutine HDF5_closeJobFile end subroutine HDF5_closeJobFile
@ -171,8 +170,6 @@ integer(HID_T) function HDF5_openFile(filePath)
integer :: hdferr integer :: hdferr
character(len=*), intent(in) :: filePath character(len=*), intent(in) :: filePath
call h5open_f(hdferr)!############################################################ DANGEROUS
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5open_f',el=hdferr)
call h5fopen_f(filePath,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr) call h5fopen_f(filePath,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr)
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f',el=hdferr) if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f',el=hdferr)

8
src/quit.f90
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@ -14,18 +14,24 @@ subroutine quit(stop_id)
use prec, only: & use prec, only: &
pInt pInt
use PetscSys use PetscSys
use hdf5
implicit none implicit none
integer(pInt), intent(in) :: stop_id integer(pInt), intent(in) :: stop_id
integer, dimension(8) :: dateAndTime ! type default integer integer, dimension(8) :: dateAndTime ! type default integer
integer :: hdferr
integer(pInt) :: error = 0_pInt integer(pInt) :: error = 0_pInt
PetscErrorCode :: ierr = 0 PetscErrorCode :: ierr = 0
call h5close_f(hdferr)
if (hdferr /= 0) write(6,'(a,i5)') ' Error in h5close_f',hdferr
call PETScFinalize(ierr) call PETScFinalize(ierr)
CHKERRQ(ierr) CHKERRQ(ierr)
#ifdef _OPENMP #ifdef _OPENMP
call MPI_finalize(error) call MPI_finalize(error)
if (error /= 0) write(6,'(a)') ' Error in MPI_finalize' if (error /= 0) write(6,'(a,i5)') ' Error in MPI_finalize',error
#endif #endif
call date_and_time(values = dateAndTime) call date_and_time(values = dateAndTime)