removed old HDF5 stuff encapsulated by ifdef preprocessor statements
This commit is contained in:
Martin Diehl
parent
c57c76085f
commit
481e12e6c4
543
code/IO.f90
543
code/IO.f90
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@ -6,10 +6,6 @@
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!> @brief input/output functions, partly depending on chosen solver
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!--------------------------------------------------------------------------------------------------
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module IO
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#ifdef HDF
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use hdf5, only: &
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HID_T
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#endif
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use prec, only: &
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pInt, &
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pReal
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@ -18,22 +14,8 @@ module IO
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private
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character(len=5), parameter, public :: &
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IO_EOF = '#EOF#' !< end of file string
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#ifdef HDF
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integer(HID_T), public, protected :: tempCoordinates, tempResults
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integer(HID_T), private :: resultsFile, tempFile
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integer(pInt), private :: currentInc
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#endif
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public :: &
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#ifdef HDF
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HDF5_mappingConstitutive, &
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HDF5_mappingHomogenization, &
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HDF5_mappingCells, &
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HDF5_addGroup ,&
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HDF5_forwardResults, &
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HDF5_addScalarDataset, &
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IO_formatIntToString ,&
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#endif
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IO_init, &
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IO_read, &
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IO_checkAndRewind, &
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@ -117,9 +99,6 @@ subroutine IO_init
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#include "compilation_info.f90"
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endif mainProcess
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#ifdef HDF
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call HDF5_createJobFile
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#endif
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end subroutine IO_init
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@ -1944,526 +1923,4 @@ recursive function abaqus_assembleInputFile(unit1,unit2) result(createSuccess)
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end function abaqus_assembleInputFile
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#endif
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#ifdef HDF
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!--------------------------------------------------------------------------------------------------
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!> @brief creates and initializes HDF5 output files
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_createJobFile
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use hdf5
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use DAMASK_interface, only: &
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getSolverWorkingDirectoryName, &
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getSolverJobName
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implicit none
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integer :: hdferr
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integer(SIZE_T) :: typeSize
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character(len=1024) :: path
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integer(HID_T) :: prp_id
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integer(SIZE_T), parameter :: increment = 104857600 ! increase temp file in memory in 100MB steps
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!--------------------------------------------------------------------------------------------------
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! initialize HDF5 library and check if integer and float type size match
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call h5open_f(hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_createJobFile: h5open_f')
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call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_createJobFile: h5tget_size_f (int)')
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if (int(pInt,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pInt does not match H5T_NATIVE_INTEGER')
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call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_createJobFile: h5tget_size_f (double)')
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if (int(pReal,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pReal does not match H5T_NATIVE_DOUBLE')
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!--------------------------------------------------------------------------------------------------
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! open file
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path = trim(getSolverWorkingDirectoryName())//trim(getSolverJobName())//'.'//'DAMASKout'
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call h5fcreate_f(path,H5F_ACC_TRUNC_F,resultsFile,hdferr)
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if (hdferr < 0) call IO_error(100_pInt,ext_msg=path)
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call HDF5_addStringAttribute(resultsFile,'createdBy','$Id$')
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!--------------------------------------------------------------------------------------------------
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! open temp file
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path = trim(getSolverWorkingDirectoryName())//trim(getSolverJobName())//'.'//'DAMASKoutTemp'
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call h5pcreate_f(H5P_FILE_ACCESS_F, prp_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_createJobFile: h5pcreate_f')
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call h5pset_fapl_core_f(prp_id, increment, .false., hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_createJobFile: h5pset_fapl_core_f')
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call h5fcreate_f(path,H5F_ACC_TRUNC_F,tempFile,hdferr)
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if (hdferr < 0) call IO_error(100_pInt,ext_msg=path)
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!--------------------------------------------------------------------------------------------------
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! create mapping groups in out file
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call HDF5_closeGroup(HDF5_addGroup("mapping"))
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call HDF5_closeGroup(HDF5_addGroup("results"))
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call HDF5_closeGroup(HDF5_addGroup("coordinates"))
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!--------------------------------------------------------------------------------------------------
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! create results group in temp file
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tempResults = HDF5_addGroup("results",tempFile)
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tempCoordinates = HDF5_addGroup("coordinates",tempFile)
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end subroutine HDF5_createJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief creates and initializes HDF5 output file
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_closeJobFile()
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use hdf5
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implicit none
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integer :: hdferr
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call h5fclose_f(resultsFile,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeJobFile: h5fclose_f')
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end subroutine HDF5_closeJobFile
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file, or if loc is present at the given location
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function HDF5_addGroup(path,loc)
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use hdf5
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implicit none
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character(len=*), intent(in) :: path
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integer(HID_T), intent(in),optional :: loc
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integer :: hdferr
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if (present(loc)) then
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call h5gcreate_f(loc, trim(path), HDF5_addGroup, hdferr)
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else
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call h5gcreate_f(resultsFile, trim(path), HDF5_addGroup, hdferr)
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endif
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(path)//' )')
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end function HDF5_addGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file
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!--------------------------------------------------------------------------------------------------
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integer(HID_T) function HDF5_openGroup(path)
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use hdf5
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implicit none
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character(len=*), intent(in) :: path
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integer :: hdferr
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call h5gopen_f(resultsFile, trim(path), HDF5_openGroup, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup: h5gopen_f ('//trim(path)//' )')
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end function HDF5_openGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief closes a group
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_closeGroup(ID)
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use hdf5
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implicit none
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integer(HID_T), intent(in) :: ID
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integer :: hdferr
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call h5gclose_f(ID, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_closeGroup: h5gclose_f')
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end subroutine HDF5_closeGroup
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!--------------------------------------------------------------------------------------------------
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!> @brief adds a new group to the results file
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_addStringAttribute(entity,attrLabel,attrValue)
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use hdf5
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implicit none
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integer(HID_T), intent(in) :: entity
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character(len=*), intent(in) :: attrLabel, attrValue
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integer :: hdferr
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integer(HID_T) :: attr_id, space_id, type_id
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5screate_f')
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call h5tcopy_f(H5T_NATIVE_CHARACTER, type_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5tcopy_f')
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call h5tset_size_f(type_id, int(len(trim(attrValue)),HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5tset_size_f')
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call h5acreate_f(entity, trim(attrLabel),type_id,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5acreate_f')
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call h5awrite_f(attr_id, type_id, trim(attrValue), int([1],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5awrite_f')
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5aclose_f')
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_addStringAttribute: h5sclose_f')
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end subroutine HDF5_addStringAttribute
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!--------------------------------------------------------------------------------------------------
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!> @brief adds the unique mapping from spatial position and constituent ID to results
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_mappingConstitutive(mapping)
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use hdf5
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implicit none
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integer(pInt), intent(in), dimension(:,:,:) :: mapping
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integer :: hdferr, NmatPoints,Nconstituents
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integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id,instance_id,position_id
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Nconstituents=size(mapping,1)
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NmatPoints=size(mapping,2)
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mapping_ID = HDF5_openGroup("mapping")
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!--------------------------------------------------------------------------------------------------
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! create dataspace
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call h5screate_simple_f(2, int([Nconstituents,NmatPoints],HSIZE_T), space_id, hdferr, &
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int([Nconstituents,NmatPoints],HSIZE_T))
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive')
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!--------------------------------------------------------------------------------------------------
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! compound type
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call h5tcreate_f(H5T_COMPOUND_F, 6_SIZE_T, dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tcreate_f dtype_id')
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call h5tinsert_f(dtype_id, "Constitutive Instance", 0_SIZE_T, H5T_STD_U16LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tinsert_f 0')
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call h5tinsert_f(dtype_id, "Position in Instance Results", 2_SIZE_T, H5T_STD_U32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tinsert_f 2')
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!--------------------------------------------------------------------------------------------------
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! create Dataset
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call h5dcreate_f(mapping_id, "Constitutive", dtype_id, space_id, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive')
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!--------------------------------------------------------------------------------------------------
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! Create memory types (one compound datatype for each member)
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), instance_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tcreate_f instance_id')
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call h5tinsert_f(instance_id, "Constitutive Instance", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tinsert_f instance_id')
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tcreate_f position_id')
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call h5tinsert_f(position_id, "Position in Instance Results", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tinsert_f position_id')
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!--------------------------------------------------------------------------------------------------
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! write data by fields in the datatype. Fields order is not important.
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call h5dwrite_f(dset_id, position_id, mapping(1:Nconstituents,1:NmatPoints,1), &
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int([Nconstituents, NmatPoints],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5dwrite_f position_id')
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call h5dwrite_f(dset_id, instance_id, mapping(1:Nconstituents,1:NmatPoints,2), &
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int([Nconstituents, NmatPoints],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5dwrite_f instance_id')
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!--------------------------------------------------------------------------------------------------
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!close types, dataspaces
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call h5tclose_f(dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tclose_f dtype_id')
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call h5tclose_f(position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tclose_f position_id')
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call h5tclose_f(instance_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5tclose_f instance_id')
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call h5dclose_f(dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5dclose_f')
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call h5sclose_f(space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5sclose_f')
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call HDF5_closeGroup(mapping_ID)
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end subroutine HDF5_mappingConstitutive
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!--------------------------------------------------------------------------------------------------
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!> @brief adds the unique mapping from spatial position and constituent ID to results
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_mappingCrystallite(mapping)
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use hdf5
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implicit none
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integer(pInt), intent(in), dimension(:,:,:) :: mapping
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integer :: hdferr, NmatPoints,Nconstituents
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integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id,instance_id,position_id
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Nconstituents=size(mapping,1)
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NmatPoints=size(mapping,2)
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mapping_ID = HDF5_openGroup("mapping")
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!--------------------------------------------------------------------------------------------------
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! create dataspace
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call h5screate_simple_f(2, int([Nconstituents,NmatPoints],HSIZE_T), space_id, hdferr, &
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int([Nconstituents,NmatPoints],HSIZE_T))
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite')
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!--------------------------------------------------------------------------------------------------
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! compound type
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call h5tcreate_f(H5T_COMPOUND_F, 6_SIZE_T, dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tcreate_f dtype_id')
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call h5tinsert_f(dtype_id, "Crystallite Instance", 0_SIZE_T, H5T_STD_U16LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f 0')
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call h5tinsert_f(dtype_id, "Position in Instance Results", 2_SIZE_T, H5T_STD_U32LE, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f 2')
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!--------------------------------------------------------------------------------------------------
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! create Dataset
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call h5dcreate_f(mapping_id, "Crystallite", dtype_id, space_id, dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite')
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!--------------------------------------------------------------------------------------------------
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! Create memory types (one compound datatype for each member)
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), instance_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tcreate_f instance_id')
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call h5tinsert_f(instance_id, "Crystallite Instance", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f instance_id')
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call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tcreate_f position_id')
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call h5tinsert_f(position_id, "Position in Instance Results", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tinsert_f position_id')
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!--------------------------------------------------------------------------------------------------
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! write data by fields in the datatype. Fields order is not important.
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call h5dwrite_f(dset_id, position_id, mapping(1:Nconstituents,1:NmatPoints,1), &
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int([Nconstituents, NmatPoints],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dwrite_f position_id')
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call h5dwrite_f(dset_id, instance_id, mapping(1:Nconstituents,1:NmatPoints,2), &
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int([Nconstituents, NmatPoints],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dwrite_f instance_id')
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!--------------------------------------------------------------------------------------------------
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!close types, dataspaces
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call h5tclose_f(dtype_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f dtype_id')
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call h5tclose_f(position_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f position_id')
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call h5tclose_f(instance_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5tclose_f instance_id')
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call h5dclose_f(dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5dclose_f')
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call h5sclose_f(space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCrystallite: h5sclose_f')
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call HDF5_closeGroup(mapping_ID)
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end subroutine HDF5_mappingCrystallite
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!--------------------------------------------------------------------------------------------------
|
||||
!> @brief adds the unique mapping from spatial position to results
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine HDF5_mappingHomogenization(mapping)
|
||||
use hdf5
|
||||
|
||||
implicit none
|
||||
integer(pInt), intent(in), dimension(:,:) :: mapping
|
||||
|
||||
integer :: hdferr, NmatPoints
|
||||
integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id,instance_id,position_id,elem_id,ip_id
|
||||
|
||||
NmatPoints=size(mapping,1)
|
||||
mapping_ID = HDF5_openGroup("mapping")
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace
|
||||
call h5screate_simple_f(1, int([NmatPoints],HSIZE_T), space_id, hdferr, &
|
||||
int([NmatPoints],HSIZE_T))
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! compound type
|
||||
call h5tcreate_f(H5T_COMPOUND_F, 11_SIZE_T, dtype_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tcreate_f dtype_id')
|
||||
|
||||
call h5tinsert_f(dtype_id, "Homogenization Instance", 0_SIZE_T, H5T_STD_U16LE, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f 0')
|
||||
call h5tinsert_f(dtype_id, "Position in Instance Results", 2_SIZE_T, H5T_STD_U32LE, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f 2')
|
||||
call h5tinsert_f(dtype_id, "Element Number", 6_SIZE_T, H5T_STD_U32LE, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f 6')
|
||||
call h5tinsert_f(dtype_id, "Material Point Number", 10_SIZE_T, H5T_STD_U8LE, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f 10')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create Dataset
|
||||
call h5dcreate_f(mapping_id, "Homogenization", dtype_id, space_id, dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! Create memory types (one compound datatype for each member)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), instance_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tcreate_f instance_id')
|
||||
call h5tinsert_f(instance_id, "Homogenization Instance", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f instance_id')
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tcreate_f position_id')
|
||||
call h5tinsert_f(position_id, "Position in Instance Results", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f position_id')
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), elem_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tcreate_f elem_id')
|
||||
call h5tinsert_f(elem_id, "Element Number", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f elem_id')
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), ip_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tcreate_f ip_id')
|
||||
call h5tinsert_f(ip_id, "Material Point Number", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tinsert_f ip_id')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write data by fields in the datatype. Fields order is not important.
|
||||
call h5dwrite_f(dset_id, position_id, mapping(1:NmatPoints,1), &
|
||||
int([NmatPoints],HSIZE_T), hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5dwrite_f position_id')
|
||||
|
||||
call h5dwrite_f(dset_id, instance_id, mapping(1:NmatPoints,2), &
|
||||
int([NmatPoints],HSIZE_T), hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5dwrite_f position_id')
|
||||
|
||||
call h5dwrite_f(dset_id, elem_id, mapping(1:NmatPoints,3), &
|
||||
int([NmatPoints],HSIZE_T), hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5dwrite_f elem_id')
|
||||
|
||||
call h5dwrite_f(dset_id, ip_id, mapping(1:NmatPoints,4), &
|
||||
int([NmatPoints],HSIZE_T), hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5dwrite_f ip_id')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!close types, dataspaces
|
||||
call h5tclose_f(dtype_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tclose_f dtype_id')
|
||||
call h5tclose_f(position_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tclose_f position_id')
|
||||
call h5tclose_f(instance_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tclose_f instance_id')
|
||||
call h5tclose_f(ip_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tclose_f ip_id')
|
||||
call h5tclose_f(elem_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5tclose_f elem_id')
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5dclose_f')
|
||||
call h5sclose_f(space_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingHomogenization: h5sclose_f')
|
||||
call HDF5_closeGroup(mapping_ID)
|
||||
|
||||
end subroutine HDF5_mappingHomogenization
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief adds the unique cell to node mapping
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine HDF5_mappingCells(mapping)
|
||||
use hdf5
|
||||
|
||||
implicit none
|
||||
integer(pInt), intent(in), dimension(:) :: mapping
|
||||
|
||||
integer :: hdferr, Nnodes
|
||||
integer(HID_T) :: mapping_id, dset_id, space_id
|
||||
|
||||
Nnodes=size(mapping)
|
||||
mapping_ID = HDF5_openGroup("mapping")
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace
|
||||
call h5screate_simple_f(1, int([Nnodes],HSIZE_T), space_id, hdferr, &
|
||||
int([Nnodes],HSIZE_T))
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells: h5screate_simple_f')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create Dataset
|
||||
call h5dcreate_f(mapping_id, "Cell",H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write data by fields in the datatype. Fields order is not important.
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, mapping, int([Nnodes],HSIZE_T), hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingCells: h5dwrite_f instance_id')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!close types, dataspaces
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5dclose_f')
|
||||
call h5sclose_f(space_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='IO_mappingConstitutive: h5sclose_f')
|
||||
call HDF5_closeGroup(mapping_ID)
|
||||
|
||||
end subroutine HDF5_mappingCells
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief creates a new scalar dataset in the given group location
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine HDF5_addScalarDataset(group,nnodes,label,SIunit)
|
||||
use hdf5
|
||||
|
||||
implicit none
|
||||
integer(HID_T), intent(in) :: group
|
||||
integer(pInt), intent(in) :: nnodes
|
||||
character(len=*), intent(in) :: SIunit,label
|
||||
|
||||
integer :: hdferr
|
||||
integer(HID_T) :: dset_id, space_id
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace
|
||||
call h5screate_simple_f(1, int([Nnodes],HSIZE_T), space_id, hdferr, &
|
||||
int([Nnodes],HSIZE_T))
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addScalarDataset: h5screate_simple_f')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create Dataset
|
||||
call h5dcreate_f(group, trim(label),H5T_NATIVE_DOUBLE, space_id, dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addScalarDataset: h5dcreate_f')
|
||||
call HDF5_addStringAttribute(dset_id,'unit',trim(SIunit))
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!close types, dataspaces
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addScalarDataset: h5dclose_f')
|
||||
call h5sclose_f(space_id, hdferr)
|
||||
|
||||
end subroutine HDF5_addScalarDataset
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief returns nicely formatted string of integer value
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
function IO_formatIntToString(myInt)
|
||||
|
||||
implicit none
|
||||
integer(pInt), intent(in) :: myInt
|
||||
character(len=1_pInt + int(log10(real(myInt)),pInt)) :: IO_formatIntToString
|
||||
write(IO_formatIntToString,'('//IO_intOut(myInt)//')') myInt
|
||||
|
||||
end function
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief copies the current temp results to the actual results file
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine HDF5_forwardResults
|
||||
use hdf5
|
||||
|
||||
implicit none
|
||||
integer :: hdferr
|
||||
integer(HID_T) :: new_loc_id
|
||||
|
||||
new_loc_id = HDF5_openGroup("results")
|
||||
currentInc = currentInc + 1_pInt
|
||||
call h5ocopy_f(tempFile, 'results', new_loc_id,dst_name=IO_formatIntToString(currentInc), hdferr=hdferr)
|
||||
if (hdferr < 0_pInt) call IO_error(1_pInt,ext_msg='HDF5_forwardResults: h5ocopy_f')
|
||||
call HDF5_closeGroup(new_loc_id)
|
||||
|
||||
end subroutine HDF5_forwardResults
|
||||
|
||||
|
||||
#endif
|
||||
end module IO
|
||||
|
|
|
|||
|
|
@ -71,12 +71,6 @@ contains
|
|||
!> @brief module initialization
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine homogenization_init
|
||||
#ifdef HDF
|
||||
use hdf5, only: &
|
||||
HID_T
|
||||
use IO, only : &
|
||||
HDF5_mappingHomogenization
|
||||
#endif
|
||||
use, intrinsic :: iso_fortran_env ! to get compiler_version and compiler_options (at least for gfortran 4.6 at the moment)
|
||||
use math, only: &
|
||||
math_I3
|
||||
|
|
@ -131,12 +125,6 @@ subroutine homogenization_init
|
|||
character(len=64), dimension(:,:), pointer :: thisOutput
|
||||
character(len=32) :: outputName !< name of output, intermediate fix until HDF5 output is ready
|
||||
logical :: knownHomogenization, knownThermal, knownDamage, knownVacancyflux, knownPorosity, knownHydrogenflux
|
||||
#ifdef HDF
|
||||
integer(pInt), dimension(:,:), allocatable :: mapping
|
||||
integer(pInt), dimension(:), allocatable :: InstancePosition
|
||||
allocate(mapping(mesh_ncpelems,4),source=0_pInt)
|
||||
allocate(InstancePosition(material_Nhomogenization),source=0_pInt)
|
||||
#endif
|
||||
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
@ -396,17 +384,6 @@ subroutine homogenization_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! allocate and initialize global state and postresutls variables
|
||||
#ifdef HDF
|
||||
elementLooping: do e = 1,mesh_NcpElems
|
||||
myInstance = homogenization_typeInstance(mesh_element(3,e))
|
||||
IpLooping: do i = 1,FE_Nips(FE_geomtype(mesh_element(2,e)))
|
||||
InstancePosition(myInstance) = InstancePosition(myInstance)+1_pInt
|
||||
mapping(e,1:4) = [instancePosition(myinstance),myinstance,e,i]
|
||||
enddo IpLooping
|
||||
enddo elementLooping
|
||||
call HDF5_mappingHomogenization(mapping)
|
||||
#endif
|
||||
|
||||
homogenization_maxSizePostResults = 0_pInt
|
||||
thermal_maxSizePostResults = 0_pInt
|
||||
damage_maxSizePostResults = 0_pInt
|
||||
|
|
|
|||
|
|
@ -4525,17 +4525,9 @@ subroutine mesh_write_cellGeom
|
|||
VTK_geo, &
|
||||
VTK_con, &
|
||||
VTK_end
|
||||
#ifdef HDF
|
||||
use IO, only: &
|
||||
HDF5_mappingCells
|
||||
#endif
|
||||
implicit none
|
||||
integer(I4P), dimension(1:mesh_Ncells) :: celltype
|
||||
integer(I4P), dimension(mesh_Ncells*(1_pInt+FE_maxNcellnodesPerCell)) :: cellconnection
|
||||
#ifdef HDF
|
||||
integer(pInt), dimension(mesh_Ncells*FE_maxNcellnodesPerCell) :: cellconnectionHDF5
|
||||
integer(pInt) :: j2=0_pInt
|
||||
#endif
|
||||
integer(I4P):: error
|
||||
integer(I4P):: g, c, e, CellID, i, j
|
||||
|
||||
|
|
@ -4550,16 +4542,8 @@ subroutine mesh_write_cellGeom
|
|||
cellconnection(j+1_pInt:j+FE_NcellnodesPerCell(c)+1_pInt) &
|
||||
= [FE_NcellnodesPerCell(c),mesh_cell(1:FE_NcellnodesPerCell(c),i,e)-1_pInt] ! number of cellnodes per cell & list of global cellnode IDs belnging to this cell (cellnode counting starts at 0)
|
||||
j = j + FE_NcellnodesPerCell(c) + 1_pInt
|
||||
#ifdef HDF
|
||||
cellconnectionHDF5(j2+1_pInt:j2+FE_NcellnodesPerCell(c)) &
|
||||
= mesh_cell(1:FE_NcellnodesPerCell(c),i,e)-1_pInt
|
||||
j2=j2 + FE_ncellnodesPerCell(c)
|
||||
#endif
|
||||
enddo
|
||||
enddo
|
||||
#ifdef HDF
|
||||
call HDF5_mappingCells(cellconnectionHDF5(1:j2))
|
||||
#endif
|
||||
|
||||
error=VTK_ini(output_format = 'ASCII', &
|
||||
title=trim(getSolverJobName())//' cell mesh', &
|
||||
|
|
|
|||
Loading…
Reference in New Issue