diff --git a/processing/pre/geom_check.py b/processing/pre/geom_check.py deleted file mode 100755 index 518e8c3b0..000000000 --- a/processing/pre/geom_check.py +++ /dev/null @@ -1,108 +0,0 @@ -#!/usr/bin/env python -# -*- coding: UTF-8 no BOM -*- - -import os,sys,vtk -import numpy as np -from optparse import OptionParser -import damask - -scriptName = os.path.splitext(os.path.basename(__file__))[0] -scriptID = ' '.join([scriptName,damask.version]) - -#-------------------------------------------------------------------------------------------------- -# MAIN -#-------------------------------------------------------------------------------------------------- - -parser = OptionParser(option_class=damask.extendableOption, usage='%prog [file[s]]', description = """ -Produce VTK rectilinear mesh of structure data from geom description - -""", version = scriptID) - -parser.add_option('-m','--nodata', - dest = 'data', - action = 'store_false', - help = 'generate mesh without microstructure index data') - -parser.set_defaults(data = True, - ) - -(options, filenames) = parser.parse_args() - -# --- loop over input files ------------------------------------------------------------------------- - -if filenames == []: filenames = [None] - -for name in filenames: - try: - table = damask.ASCIItable(name = name, - buffered = False, labeled = False, readonly = True) - except: continue - damask.util.report(scriptName,name) - -# --- interpret header ---------------------------------------------------------------------------- - - table.head_read() - info,extra_header = table.head_getGeom() - - damask.util.croak(['grid a b c: %s'%(' x '.join(map(str,info['grid']))), - 'size x y z: %s'%(' x '.join(map(str,info['size']))), - 'origin x y z: %s'%(' : '.join(map(str,info['origin']))), - 'homogenization: %i'%info['homogenization'], - 'microstructures: %i'%info['microstructures'], - ]) - - errors = [] - if np.any(info['grid'] < 1): errors.append('invalid grid a b c.') - if np.any(info['size'] <= 0.0): errors.append('invalid size x y z.') - -#--- read microstructure information -------------------------------------------------------------- - - if options.data: - microstructure,ok = table.microstructure_read(info['grid'],strict = True) # read microstructure - - if ok: - structure = vtk.vtkIntArray() - structure.SetName('Microstructures') - for idx in microstructure: structure.InsertNextValue(idx) - - else: errors.append('mismatch between data and grid dimension.') - - if errors != []: - damask.util.croak(errors) - table.close(dismiss = True) - continue - -# --- generate VTK rectilinear grid --------------------------------------------------------------- - - grid = vtk.vtkRectilinearGrid() - grid.SetDimensions([x+1 for x in info['grid']]) - for i in xrange(3): - temp = vtk.vtkDoubleArray() - temp.SetNumberOfTuples(info['grid'][i]+1) - for j in xrange(info['grid'][i]+1): - temp.InsertTuple1(j,j*info['size'][i]/info['grid'][i]+info['origin'][i]) - if i == 0: grid.SetXCoordinates(temp) - elif i == 1: grid.SetYCoordinates(temp) - elif i == 2: grid.SetZCoordinates(temp) - - - if options.data: grid.GetCellData().AddArray(structure) - -# --- write data ----------------------------------------------------------------------------------- - if name: - writer = vtk.vtkXMLRectilinearGridWriter() - (directory,filename) = os.path.split(name) - writer.SetDataModeToBinary() - writer.SetCompressorTypeToZLib() - writer.SetFileName(os.path.join(directory,os.path.splitext(filename)[0]+'.'+writer.GetDefaultFileExtension())) - else: - writer = vtk.vtkDataSetWriter() - writer.WriteToOutputStringOn() - writer.SetHeader('# powered by '+scriptID) - - if vtk.VTK_MAJOR_VERSION <= 5: writer.SetInput(grid) - else: writer.SetInputData(grid) - writer.Write() - if name is None: sys.stdout.write(writer.GetOutputString()[0:writer.GetOutputStringLength()]) - - table.close() diff --git a/processing/pre/geom_check.sh b/processing/pre/geom_check.sh new file mode 100755 index 000000000..05e524049 --- /dev/null +++ b/processing/pre/geom_check.sh @@ -0,0 +1,15 @@ +#!/bin/bash + +for geom in "$@" +do + vtk_rectilinearGrid \ + --geom $geom + + geom_toTable \ + < $geom \ + | \ + vtk_addRectilinearGridData \ + --scalar microstructure \ + --inplace \ + --vtk ${geom%.*}.vtr +done