diff --git a/processing/post/addCalculation.py b/processing/post/addCalculation.py new file mode 100755 index 000000000..7f26b64bf --- /dev/null +++ b/processing/post/addCalculation.py @@ -0,0 +1,112 @@ +#!/usr/bin/python + +import os,re,sys,math,string,damask_tools +from optparse import OptionParser, Option + +# ----------------------------- +class extendableOption(Option): +# ----------------------------- +# used for definition of new option parser action 'extend', which enables to take multiple option arguments +# taken from online tutorial http://docs.python.org/library/optparse.html + + ACTIONS = Option.ACTIONS + ("extend",) + STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",) + TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",) + ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",) + + def take_action(self, action, dest, opt, value, values, parser): + if action == "extend": + lvalue = value.split(",") + values.ensure_value(dest, []).extend(lvalue) + else: + Option.take_action(self, action, dest, opt, value, values, parser) + + + +def L2(object): + + return math.sqrt(sum([x*x for x in object])) + + +# -------------------------------------------------------------------- +# MAIN +# -------------------------------------------------------------------- + +parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """ +Add column(s) containing norm of requested column(s) being either vectors or tensors. + +""" + string.replace('$Id: addNorm.py 1118 2011-11-23 14:54:53Z MPIE\p.eisenlohr $','\n','\\n') +) + + +parser.add_option('-l','--label', dest='labels', action='extend', type='string', \ + help='(list of) new column labels') +parser.add_option('-f','--formula', dest='formulas', action='extend', type='string', \ + help='(list of) formulas corresponding to labels') + +parser.set_defaults(labels= []) +parser.set_defaults(formulas= []) + +(options,filenames) = parser.parse_args() + +if len(options.labels) != len(options.formulas): + parser.error('number of labels (%i) and formulas (%i) do not match'%(len(options.labels),len(options.formulas))) + +# ------------------------------------------ setup file handles --------------------------------------- + +files = [] +if filenames == []: + files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout}) +else: + for name in filenames: + if os.path.exists(name): + files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')}) + +# ------------------------------------------ loop over input files --------------------------------------- + +for file in files: + if file['name'] != 'STDIN': print file['name'] + + table = damask_tools.ASCII_TABLE(file['input'],file['output'],False) # make unbuffered ASCII_table + table.head_read() # read ASCII header info + table.info_append(string.replace('$Id: addNorm.py 1118 2011-11-23 14:54:53Z MPIE\p.eisenlohr $','\n','\\n') + \ + '\t' + ' '.join(sys.argv[1:])) + + column = {} + evaluator = {} + for label,formula in zip(options.labels,options.formulas): + table.labels_append(label) + interpolator = [] + operands = re.findall(r'\$(.+?)\$',formula) + for operand in operands: + if not operand in column: + try: + column[operand] = table.labels.index(operand) + except: + parser.error('column %s not found...\n'%operand) + interpolator += ['float(table.data[%i])'%column[operand]] + for operand in operands: + formula = formula.replace('$'+operand+'$','%e') + evaluator[label] = "'" + formula + "'%(" + ','.join(interpolator) + ")" + +# ------------------------------------------ assemble header --------------------------------------- + + table.head_write() + +# ------------------------------------------ process data --------------------------------------- + + while table.data_read(): # read next data line of ASCII table + + for label in options.labels: + table.data_append(eval(eval(evaluator[label]))) + + table.data_write() # output processed line + +# ------------------------------------------ output result --------------------------------------- + + table.output_flush() # just in case of buffered ASCII table + + file['input'].close() # close input ASCII table + if file['name'] != 'STDIN': + file['output'].close # close output ASCII table + os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new diff --git a/processing/setup/setup_processing.py b/processing/setup/setup_processing.py index bf1e1177b..293fe2133 100755 --- a/processing/setup/setup_processing.py +++ b/processing/setup/setup_processing.py @@ -22,6 +22,7 @@ bin_link = { \ 'post' : [ '3Dvisualize.py', 'addCauchy.py', + 'addCalculation.py', 'addDeterminant.py', 'addDivergence.py', 'addMises.py',