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DAMASK_EICMD
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automatically figure dimension of labels to tag.

This commit is contained in:
Philip Eisenlohr 2015-06-13 11:55:20 +00:00
parent 66ce1d0b33
commit 37792f67df
1 changed files with 33 additions and 60 deletions
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93
processing/post/tagLabel.py
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@ -17,74 +17,48 @@ Tag scalar, vectorial, and/or tensorial data header labels by specified suffix.
""", version = scriptID) """, version = scriptID)
parser.add_option('-l','--tag', dest='tag', \ parser.add_option('-t','--tag', dest='tag', metavar='string',
help='tag to use as suffix for labels') help='tag to use as suffix for labels')
parser.add_option('-v','--vector', dest='vector', action='extend', \ parser.add_option('-l','--label', dest='label', action='extend', metavar='<string LIST>',
help='heading of columns containing 3x1 vector field values') help='columns to tag')
parser.add_option('-t','--tensor', dest='tensor', action='extend', \
help='heading of columns containing 3x3 tensor field values')
parser.add_option('-s','--special', dest='special', action='extend', \
help='heading of columns containing field values of special dimension')
parser.add_option('-d','--dimension', dest='N', type='int', \
help='dimension of special field values [%default]')
parser.set_defaults(tag = '') parser.set_defaults(tag = '')
parser.set_defaults(vector = []) parser.set_defaults(label = [])
parser.set_defaults(tensor = [])
parser.set_defaults(special = [])
parser.set_defaults(N = 1)
(options,filenames) = parser.parse_args() (options,filenames) = parser.parse_args()
datainfo = { # list of requested labels per datatype # --- loop over input files -------------------------------------------------------------------------
'vector': {'len':3,
'label':[]},
'tensor': {'len':9,
'label':[]},
'special': {'len':options.N,
'label':[]},
}
if options.vector != None: datainfo['vector']['label'] += options.vector
if options.tensor != None: datainfo['tensor']['label'] += options.tensor
if options.special != None: datainfo['special']['label'] += options.special
# ------------------------------------------ setup file handles ------------------------------------
files = []
if filenames == []: if filenames == []:
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}) filenames = ['STDIN']
else:
for name in filenames:
if os.path.exists(name):
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
# ------------------------------------------ loop over input files --------------------------------------- for name in filenames:
if name == 'STDIN':
file = {'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}
file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
else:
if not os.path.exists(name): continue
file = {'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}
file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
for file in files: table = damask.ASCIItable(file['input'],file['output'],buffered=False) # make unbuffered ASCII_table
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') table.head_read() # read ASCII header info
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
table.head_read() # read ASCII header info
table.info_append(string.replace('$Id$','\n','\\n') + \
'\t' + ' '.join(sys.argv[1:]))
# ------------------------------------------ process labels --------------------------------------- # ------------------------------------------ process labels ---------------------------------------
if options.vector == [] and options.tensor == [] and options.special == []: # default to tagging all labels if options.label == []: # default to tagging all labels
for i,label in enumerate(table.labels): for i,label in enumerate(table.labels):
table.labels[i] += options.tag table.labels[i] += options.tag
else: # tag individual candidates else: # tag individual candidates
for datatype,info in datainfo.items(): indices = table.label_index (options.label)
for label in info['label']: dimensions = table.label_dimension(options.label)
key = '1_%s'%label if info['len']>1 else label print indices,dimensions
if key not in table.labels: for i,index in enumerate(indices):
file['croak'].write('column %s not found...\n'%key) if index == -1:
else: file['croak'].write('label %s not present...\n'%options.label[i])
offset = table.labels.index(key) else:
for i in xrange(info['len']): for j in xrange(dimensions[i]):
table.labels[offset+i] += options.tag table.labels[index+j] += options.tag
# ------------------------------------------ assemble header --------------------------------------- # ------------------------------------------ assemble header ---------------------------------------
@ -93,14 +67,13 @@ for file in files:
# ------------------------------------------ process data --------------------------------------- # ------------------------------------------ process data ---------------------------------------
outputAlive = True outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table while outputAlive and table.data_read(): # read next data line of ASCII table
outputAlive = table.data_write() # output processed line outputAlive = table.data_write() # output processed line
# ------------------------------------------ output result --------------------------------------- # ------------------------------------------ output result ---------------------------------------
outputAlive and table.output_flush() # just in case of buffered ASCII table outputAlive and table.output_flush() # just in case of buffered ASCII table
table.input_close() # close input ASCII table table.close() # close ASCII tables
if file['name'] != 'STDIN': if file['name'] != 'STDIN':
file['output'].close # close output ASCII table os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new