223031012
/
DAMASK_EICMD
mirror of https://github.com/achalhp/DAMASK_EICMD.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now.

This commit is contained in:
Philip Eisenlohr 2014-11-05 22:02:40 +00:00
parent f7da804927
commit 35f8b9786e
1 changed files with 17 additions and 14 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

31
processing/pre/geom_addPrimitive.py
View File

@ -8,6 +8,8 @@ from optparse import OptionParser, OptionGroup, Option, SUPPRESS_HELP
scriptID = '$Id: geom_addPrimitive.py 3412 2014-08-22 16:58:53Z MPIE\m.diehl $' scriptID = '$Id: geom_addPrimitive.py 3412 2014-08-22 16:58:53Z MPIE\m.diehl $'
scriptName = scriptID.split()[1] scriptName = scriptID.split()[1]
oversampling = 2.
#-------------------------------------------------------------------------------------------------- #--------------------------------------------------------------------------------------------------
class extendedOption(Option): class extendedOption(Option):
#-------------------------------------------------------------------------------------------------- #--------------------------------------------------------------------------------------------------
@ -86,6 +88,9 @@ elif options.quaternion != []:
else: else:
rotation = damask.Quaternion().conjugated() rotation = damask.Quaternion().conjugated()
options.center = numpy.array(options.center)
invRotation = rotation.conjugated() # rotation of gridpos into primitive coordinate system
#--- setup file handles -------------------------------------------------------------------------- #--- setup file handles --------------------------------------------------------------------------
files = [] files = []
if filenames == []: if filenames == []:
@ -180,20 +185,18 @@ for file in files:
if options.dimension != None: if options.dimension != None:
mask = (numpy.array(options.dimension) < 0).astype(float) # zero where positive dimension, otherwise one mask = (numpy.array(options.dimension) < 0).astype(float) # zero where positive dimension, otherwise one
dim = abs(numpy.array(options.dimension)) # dimensions of primitive body dim = abs(numpy.array(options.dimension)) # dimensions of primitive body
extent = range(int(math.ceil(-math.sqrt(numpy.dot(dim,dim))/2.)), pos = numpy.zeros(3,dtype='float')
int(math.ceil( math.sqrt(numpy.dot(dim,dim))/2.))) # maximum extent (diagonal) of body # hiresPrimitive = numpy.zeros((2*dim[0],2*dim[1],2*dim[2],3)) # primitive discretized at twice the grid resolution
gridpos = numpy.zeros(3,dtype='float') for i,pos[0] in enumerate(numpy.arange(-dim[0]/oversampling,(dim[0]+1)/oversampling,1./oversampling)):
for j,pos[1] in enumerate(numpy.arange(-dim[1]/oversampling,(dim[1]+1)/oversampling,1./oversampling)):
for gridpos[0] in extent + (1+dim[0])%2/2.0: for k,pos[2] in enumerate(numpy.arange(-dim[2]/oversampling,(dim[2]+1)/oversampling,1./oversampling)):
for gridpos[1] in extent + (1+dim[1])%2/2.0: gridpos = numpy.floor(rotation*pos) # rotate and lock into spacial grid
for gridpos[2] in extent + (1+dim[2])%2/2.0: primPos = invRotation*gridpos # rotate back to primitive coordinate system
pos = rotation*gridpos if numpy.dot(mask*primPos/dim,mask*primPos/dim) <= 0.25 and \
if numpy.dot(mask*pos/dim,mask*pos/dim) <= 0.25 and \ numpy.all(abs((1.-mask)*primPos/dim) <= 0.5): # inside ellipsoid and inside box
numpy.all(abs((1.-mask)*pos/dim) <= 0.5): # inside ellipsoid and inside box microstructure[(gridpos[0]+options.center[0])%info['grid'][0],
microstructure[options.center[0]+gridpos[0], (gridpos[1]+options.center[1])%info['grid'][1],
options.center[1]+gridpos[1], (gridpos[2]+options.center[2])%info['grid'][2]] = options.fill # assign microstructure index
options.center[2]+gridpos[2],
] = options.fill
newInfo['microstructures'] = microstructure.max() newInfo['microstructures'] = microstructure.max()