now a library function
This commit is contained in:
Martin Diehl
parent
0c6ce390b5
commit
309c53dc97
2
PRIVATE
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PRIVATE
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Subproject commit 3fc9d58a35614fd8ffa1179e634431eb457d0150
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Subproject commit a52584687a93b9f007cf019861fce68eb31451ab
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#!/usr/bin/env python3
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import os
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from optparse import OptionParser
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import damask
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scriptName = os.path.splitext(os.path.basename(__file__))[0]
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scriptID = ' '.join([scriptName,damask.version])
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#--------------------------------------------------------------------------------------------------
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# MAIN
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#--------------------------------------------------------------------------------------------------
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parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [geomfile(s)]', description = """
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Inserts a primitive geometric object at a given position.
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These objects can be boxes, cylinders, or ellipsoids.
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""", version = scriptID)
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parser.add_option('-c', '--center',
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dest='center',
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type='float', nargs = 3, metavar=' '.join(['float']*3),
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help='a,b,c origin of primitive %default')
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parser.add_option('-d', '--dimension',
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dest='dimension',
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type='float', nargs = 3, metavar=' '.join(['float']*3),
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help='a,b,c extension of hexahedral box')
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parser.add_option('-e', '--exponent',
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dest='exponent',
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type='float', nargs = 3, metavar=' '.join(['float']*3),
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help='i,j,k exponents for axes: '+
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'0 gives octahedron (|x|^(2^0) + |y|^(2^0) + |z|^(2^0) < 1), '+
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'1 gives a sphere (|x|^(2^1) + |y|^(2^1) + |z|^(2^1) < 1), '+
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'large values produce boxes, negative turn concave.')
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parser.add_option('-f', '--fill',
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dest='fill',
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type='float', metavar = 'int',
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help='microstructure index to fill primitive, defaults to max microstructure index + 1')
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parser.add_option('-q', '--quaternion',
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dest='quaternion',
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type='float', nargs = 4, metavar=' '.join(['float']*4),
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help = 'rotation of primitive as quaternion')
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parser.add_option('-a', '--angleaxis',
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dest='angleaxis',
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type=float, nargs = 4, metavar=' '.join(['float']*4),
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help = 'axis and angle to rotate primitive')
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parser.add_option( '--degrees',
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dest='degrees',
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action='store_true',
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help = 'angle is given in degrees')
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parser.add_option( '--nonperiodic',
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dest='periodic',
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action='store_false',
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help = 'wrap around edges')
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parser.add_option( '--realspace',
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dest='realspace',
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action='store_true',
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help = '-c and -d span [origin,origin+size] instead of [0,grid] coordinates')
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parser.add_option( '--invert',
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dest='inside',
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action='store_false',
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help = 'invert the volume filled by the primitive (inside/outside)')
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parser.set_defaults(center = (.0,.0,.0),
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degrees = False,
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exponent = (20,20,20), # box shape by default
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periodic = True,
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realspace = False,
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inside = True,
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)
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print('This script is broken and does nothing')
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#!/usr/bin/env python3
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import os
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import sys
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from io import StringIO
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from optparse import OptionParser
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import numpy as np
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import damask
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scriptName = os.path.splitext(os.path.basename(__file__))[0]
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scriptID = ' '.join([scriptName,damask.version])
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#--------------------------------------------------------------------------------------------------
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# MAIN
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#--------------------------------------------------------------------------------------------------
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parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [geomfile(s)]', description = """
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Offset microstructure index for points which see a microstructure different from themselves
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(or listed as triggers) within a given (cubic) vicinity, i.e. within the region close to a grain/phase boundary.
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""", version = scriptID)
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parser.add_option('-v', '--vicinity',
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dest = 'vicinity',
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type = 'int', metavar = 'int',
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help = 'voxel distance checked for presence of other microstructure [%default]')
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parser.add_option('-o', '--offset',
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dest='offset',
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type = 'int', metavar = 'int',
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help='offset (positive or negative) to tag microstructure indices, defaults to max microstructure index')
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parser.add_option('-t', '--trigger',
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dest = 'trigger',
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action = 'extend', metavar = '<int LIST>',
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help = 'list of microstructure indices triggering a change')
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parser.add_option('-n', '--nonperiodic',
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dest = 'mode',
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action = 'store_const', const = 'nearest',
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help = 'assume geometry to be non-periodic')
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parser.set_defaults(vicinity = 1,
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trigger = [],
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mode = 'wrap',
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)
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(options, filenames) = parser.parse_args()
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options.trigger = np.array(options.trigger, dtype=int)
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if filenames == []: filenames = [None]
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for name in filenames:
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damask.util.report(scriptName,name)
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geom = damask.Geom.from_file(StringIO(''.join(sys.stdin.read())) if name is None else name)
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damask.util.croak(geom.vicinity_offset(options.vicinity,options.offset,options.trigger,
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True if options.mode is 'wrap' else False))
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geom.add_comments(scriptID + ' ' + ' '.join(sys.argv[1:]))
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geom.to_file(sys.stdout if name is None else name,pack=False)
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