introduced delimiter option (default = tab) for ascii table output, use space for geometry files

lib/damask/asciitable.py

@@ -229,21 +229,21 @@ class ASCIItable():
     return self.data.shape
     
 # ------------------------------------------------------------------
-  def data_write(self):
+  def data_write(self, delimiter='\t'):
     if len(self.data) == 0: return
     
     if isinstance(self.data[0],list):
-      return self.output_write(['\t'.join(map(str,items)) for items in self.data])
+      return self.output_write([delimiter.join(map(str,items)) for items in self.data])
     else:
-      return self.output_write('\t'.join(map(str,self.data)))
+      return self.output_write(delimiter.join(map(str,self.data)))
 
 # ------------------------------------------------------------------
-  def data_writeArray(self,format='%g'):
+  def data_writeArray(self,format='%g',delimiter = '\t'):
     import numpy
     '''
        write whole numpy array data
     '''
-    return numpy.savetxt(self.__IO__['out'], self.data, fmt=format, delimiter='\t')
+    return numpy.savetxt(self.__IO__['out'], self.data, fmt=format, delimiter=delimiter)
 
 # ------------------------------------------------------------------
   def data_append(self,

processing/pre/geom_canvas.py

@@ -212,7 +212,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
   formatwidth = int(math.floor(math.log10(microstructure_cropped.max())+1))
   theTable.data = microstructure_cropped.reshape((newInfo['grid'][0],newInfo['grid'][1]*newInfo['grid'][2]),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_fromVoronoiTessellation.py

@@ -247,7 +247,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
     formatwidth = 1+int(math.log10(newInfo['microstructures']))
     theTable.data = indices.reshape(info['grid'][1]*info['grid'][2],info['grid'][0])
-    theTable.data_writeArray('%%%ii'%(formatwidth))
+    theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
 

processing/pre/geom_grainGrowth.py

@@ -222,7 +222,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
   formatwidth = int(math.floor(math.log10(microstructure.max())+1))
   theTable.data = microstructure[0:info['grid'][0],0:info['grid'][1],0:info['grid'][2]].reshape(numpy.prod(info['grid']),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_pack.py

@@ -132,7 +132,7 @@ for file in files:
   theTable.head_write()
   theTable.output_flush()
   
-# --- write packed microstructure information ------------------------------------------------------------
+# --- write packed microstructure information -----------------------------------------------------
   type = ''
   former = -1
   start = -1
@@ -161,8 +161,7 @@ for file in files:
                          'to': ['%i to %i'%(former-reps+1,former)],
                          'of': ['%i of %i'%(reps,former)],
                         }[type]
-        theTable.data_write()
-#        file['output'].write(output)
+        theTable.data_write(delimiter=' ')
         type = '.'
         start = current
         reps = 1
@@ -173,9 +172,8 @@ for file in files:
                    'to': ['%i to %i'%(former-reps+1,former)],
                    'of': ['%i of %i'%(reps,former)],
                   }[type]
-  theTable.data_write()
+  theTable.data_write(delimiter=' ')
   theTable.output_flush()
-#  file['output'].write(output+'\n')
 
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_rescale.py

@@ -204,7 +204,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
   formatwidth = int(math.floor(math.log10(microstructure.max())+1))
   theTable.data = microstructure.reshape((newInfo['grid'][0],newInfo['grid'][1]*newInfo['grid'][2]),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_translate.py

@@ -187,7 +187,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
   formatwidth = int(math.floor(math.log10(substituted.max())+1))
   theTable.data = substituted.reshape((info['grid'][0],info['grid'][1]*info['grid'][2]),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_unpack.py

@@ -159,7 +159,7 @@ for file in files:
     theTable.data = microstructure
   else:
     theTable.data = microstructure.reshape((info['grid'][0],info['grid'][1]*info['grid'][2]),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter = ' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':

processing/pre/geom_vicinityOffset.py

@@ -177,7 +177,7 @@ for file in files:
 # --- write microstructure information ------------------------------------------------------------
   formatwidth = int(math.floor(math.log10(microstructure.max())+1))
   theTable.data = microstructure.reshape((info['grid'][0],info['grid'][1]*info['grid'][2]),order='F').transpose()
-  theTable.data_writeArray('%%%ii'%(formatwidth))
+  theTable.data_writeArray('%%%ii'%(formatwidth),delimiter=' ')
     
 #--- output finalization --------------------------------------------------------------------------
   if file['name'] != 'STDIN':