small fixes

processing/post/DADF5toDREAM3D.py

@@ -70,7 +70,7 @@ for filename in options.filenames:
             pass
 
         o = h5py.File(dirname + '/' + os.path.splitext(filename)[0] \
-          + 'inc_{}.dream3D'.format(inc[3:].zfill(N_digits)),'w')
+          + '_inc_{}.dream3D'.format(inc[3:].zfill(N_digits)),'w')
         o.attrs['DADF5toDREAM3D'] = '1.0'
         o.attrs['FileVersion']    = '7.0'
 

processing/post/vtk_addData.py

@@ -5,6 +5,8 @@ import sys
 from io import StringIO
 from optparse import OptionParser
 
+import numpy as np
+
 import damask
 
 scriptName = os.path.splitext(os.path.basename(__file__))[0]

processing/pre/geom_fromVoronoiTessellation.py

@@ -3,6 +3,7 @@
 import os
 import sys
 import multiprocessing
+from io import StringIO
 from optparse import OptionParser,OptionGroup
 
 import numpy as np
@@ -15,7 +16,7 @@ scriptName = os.path.splitext(os.path.basename(__file__))[0]
 scriptID   = ' '.join([scriptName,damask.version])
 
 
-def Laguerre_tessellation(grid, seeds, weights, grains, periodic = True, cpus = 2):
+def Laguerre_tessellation(grid, seeds, grains, size, periodic, weights, cpus):
 
   def findClosestSeed(fargs):
     point, seeds, myWeights = fargs
@@ -52,10 +53,10 @@ def Laguerre_tessellation(grid, seeds, weights, grains, periodic = True, cpus =
               [ -1, 1, 1 ],
               [  0, 1, 1 ],
               [  1, 1, 1 ],
-             ]).astype(float)*info['size'] if periodic else \
+             ],dtype=np.float)*size if periodic else \
     np.array([
               [  0, 0, 0 ],
-             ]).astype(float)
+             ],dtype=np.float)
 
   repeatweights = np.tile(weights,len(copies)).flatten(order='F')                                   # Laguerre weights (1,2,3,1,2,3,...,1,2,3)
   for vec in copies:                                                                                # periodic copies of seed points ...
@@ -237,9 +238,10 @@ for name in filenames:
 
     damask.util.croak('tessellating...')
     if options.laguerre:
-        indices = Laguerre_tessellation(coords,seeds,table.get(options.weight),grains,options.periodic,options.cpus)
+        indices = Laguerre_tessellation(coords,seeds,grains,size,options.periodic,
+                                        table.get(options.weight),options.cpus)
     else:
-        indices = Voronoi_tessellation(coords,seeds,grains,size,options.periodic)
+        indices = Voronoi_tessellation (coords,seeds,grains,size,options.periodic)
 
     config_header = []
     if options.config:

python/damask/environment.py

@@ -1,20 +1,17 @@
 import os
-try:
+import tkinter
-    import tkinter
-except:
-    tkinter = None
 
 class Environment:
 
     def __init__(self):
         """Read and provide values of DAMASK configuration."""
         self.options = self._get_options()
-        if tkinter:
+        try:
             tk = tkinter.Tk()
             self.screen_width  = tk.winfo_screenwidth()
             self.screen_height = tk.winfo_screenheight()
             tk.destroy()
-        else:
+        except tkinter.TclError:
             self.screen_width  = 1024
             self.screen_height =  768
 

python/damask/ktv.py

@@ -49,7 +49,6 @@ class VTK:
             Spatial origin.
 
         """
-
         geom = vtk.vtkRectilinearGrid()
         geom.SetDimensions(*(grid+1))
         geom.SetXCoordinates(np_to_vtk(np.linspace(origin[0],origin[0]+size[0],grid[0]+1),deep=True))