Table.save(with_labels=False) to properly store ANG
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@ -569,7 +569,8 @@ class Table:
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def save(self,
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fname: FileHandle):
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fname: FileHandle,
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with_labels: bool = True):
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"""
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Save as plain text file.
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@ -577,20 +578,23 @@ class Table:
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----------
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fname : file, str, or pathlib.Path
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Filename or file for writing.
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with_labels : bool, optional
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Write column labels. Defaults to True.
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"""
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labels = []
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for l in list(dict.fromkeys(self.data.columns)):
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if self.shapes[l] == (1,):
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labels.append(f'{l}')
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elif len(self.shapes[l]) == 1:
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labels += [f'{i+1}_{l}' \
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for i in range(self.shapes[l][0])]
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else:
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labels += [f'{util.srepr(self.shapes[l],"x")}:{i+1}_{l}' \
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for i in range(np.prod(self.shapes[l]))]
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if with_labels:
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for l in list(dict.fromkeys(self.data.columns)):
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if self.shapes[l] == (1,):
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labels.append(f'{l}')
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elif len(self.shapes[l]) == 1:
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labels += [f'{i+1}_{l}' \
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for i in range(self.shapes[l][0])]
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else:
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labels += [f'{util.srepr(self.shapes[l],"x")}:{i+1}_{l}' \
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for i in range(np.prod(self.shapes[l]))]
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f = open(Path(fname).expanduser(),'w',newline='\n') if isinstance(fname, (str, Path)) else fname
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f.write('\n'.join([f'# {c}' for c in self.comments] + [' '.join(labels)])+'\n')
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f.write('\n'.join([f'# {c}' for c in self.comments] + [' '.join(labels)])+('\n' if labels else ''))
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self.data.to_csv(f,sep=' ',na_rep='nan',index=False,header=False)
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@ -77,14 +77,14 @@ class TestTable:
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new = Table.load(tmp_path/'default.txt')
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elif mode == 'str':
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new = Table.load(str(tmp_path/'default.txt'))
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assert all(default.data==new.data) and default.shapes == new.shapes
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assert all(default.data == new.data) and default.shapes == new.shapes
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def test_write_read_file(self,default,tmp_path):
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with open(tmp_path/'default.txt','w') as f:
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default.save(f)
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with open(tmp_path/'default.txt') as f:
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new = Table.load(f)
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assert all(default.data==new.data) and default.shapes == new.shapes
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assert all(default.data == new.data) and default.shapes == new.shapes
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def test_write_invalid_format(self,default,tmp_path):
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with pytest.raises(TypeError):
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@ -105,6 +105,12 @@ class TestTable:
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assert new.data.shape == (4,10) and \
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new.labels == ['eu', 'pos', 'IQ', 'CI', 'ID', 'intensity', 'fit']
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def test_save_ang(self,ref_path,tmp_path):
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orig = Table.load_ang(ref_path/'simple.ang')
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orig.save(tmp_path/'simple.ang',with_labels=False)
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saved = Table.load_ang(tmp_path/'simple.ang')
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assert saved == orig
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@pytest.mark.parametrize('fname',['datatype-mix.txt','whitespace-mix.txt'])
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def test_read_strange(self,ref_path,fname):
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with open(ref_path/fname) as f:
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