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Merge branch 'development' into almost-no-postResults

This commit is contained in:
Martin Diehl 2019-12-05 11:13:50 +01:00
parent 93da6d3f63 cc67f0e142
commit 204cbe9bd0
26 changed files with 1577 additions and 13 deletions
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2
.gitattributes vendored
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@ -3,8 +3,8 @@
# always use LF, even if the files are edited on windows, they need to be compiled/used on unix # always use LF, even if the files are edited on windows, they need to be compiled/used on unix
* text eol=lf * text eol=lf
installation/mods_Abaqus/abaqus_v6_windows.env eol=crlf
# Denote all files that are truly binary and should not be modified. # Denote all files that are truly binary and should not be modified.
*.png binary *.png binary
*.jpg binary *.jpg binary
*.cae binary *.cae binary
*.hdf5 binary

2
VERSION
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@ -1 +1 @@
v2.0.3-1111-g374980da v2.0.3-1133-gfede8225

21
processing/post/DADF5toDREAM3D.py
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@ -49,7 +49,7 @@ Phase_types = {'Primary': 0} #further additions to these can be done by looking
# -------------------------------------------------------------------- # --------------------------------------------------------------------
parser = argparse.ArgumentParser(description='Creating a file for DREAM3D from DAMASK data') parser = argparse.ArgumentParser(description='Creating a file for DREAM3D from DAMASK data')
parser.add_argument('filenames',nargs='+',help='HDF5 based output file') parser.add_argument('filenames',nargs='+',help='HDF5 based output file')
parser.add_argument('--inc',nargs='+',help='Increment for which DREAM3D to be used, eg. 00025',type=int) parser.add_argument('--inc',nargs='+',help='Increment for which DREAM3D to be used, eg. 25',type=int)
parser.add_argument('-d','--dir', dest='dir',default='postProc',metavar='string', parser.add_argument('-d','--dir', dest='dir',default='postProc',metavar='string',
help='name of subdirectory to hold output') help='name of subdirectory to hold output')
@ -59,15 +59,13 @@ options = parser.parse_args()
# loop over input files # loop over input files
for filename in options.filenames: for filename in options.filenames:
f = damask.DADF5(filename) #DAMASK output file f = damask.DADF5(filename) #DAMASK output file
count = 0 for increment in options.inc:
for increment in f.increments: f.set_by_increment(increment,increment)
if int(increment[3:]) not in options.inc: if len(f.visible['increments']) == 0:
count = count + 1
continue continue
#-------output file creation------------------------------------- #-------output file creation-------------------------------------
dirname = os.path.abspath(os.path.join(os.path.dirname(filename),options.dir)) dirname = os.path.abspath(os.path.join(os.path.dirname(filename),options.dir))
print(dirname)
try: try:
os.mkdir(dirname) os.mkdir(dirname)
except FileExistsError: except FileExistsError:
@ -90,11 +88,10 @@ for filename in options.filenames:
# Phase information of DREAM.3D is constituent ID in DAMASK # Phase information of DREAM.3D is constituent ID in DAMASK
o[cell_data_label + '/Phases'] = f.get_constituent_ID().reshape(tuple(f.grid)+(1,)) o[cell_data_label + '/Phases'] = f.get_constituent_ID().reshape(tuple(f.grid)+(1,))
# Data quaternions # Data quaternions
DAMASK_quaternion = f.read_dataset(f.get_dataset_location('orientation'),0) DAMASK_quaternion = f.read_dataset(f.get_dataset_location('orientation'))
DREAM_3D_quaternion = np.empty((np.prod(f.grid),4),dtype=np.float32)
# Convert: DAMASK uses P = -1, DREAM.3D uses P = +1. Also change position of imagninary part # Convert: DAMASK uses P = -1, DREAM.3D uses P = +1. Also change position of imagninary part
DREAM_3D_quaternion = np.hstack((-DAMASK_quaternion['x'],-DAMASK_quaternion['y'],-DAMASK_quaternion['z'], DREAM_3D_quaternion = np.hstack((-DAMASK_quaternion['x'],-DAMASK_quaternion['y'],-DAMASK_quaternion['z'],
DAMASK_quaternion['w'])) DAMASK_quaternion['w'])).astype(np.float32)
o[cell_data_label + '/Quats'] = DREAM_3D_quaternion.reshape(tuple(f.grid)+(4,)) o[cell_data_label + '/Quats'] = DREAM_3D_quaternion.reshape(tuple(f.grid)+(4,))
# Attributes to CellData group # Attributes to CellData group
@ -109,12 +106,14 @@ for filename in options.filenames:
# phase attributes # phase attributes
o[cell_data_label + '/Phases'].attrs['ComponentDimensions'] = np.array([1],np.uint64) o[cell_data_label + '/Phases'].attrs['ComponentDimensions'] = np.array([1],np.uint64)
o[cell_data_label + '/Phases'].attrs['ObjectType'] = 'DataArray<int32_t>' o[cell_data_label + '/Phases'].attrs['ObjectType'] = 'DataArray<int32_t>'
o[cell_data_label + '/Phases'].attrs['TupleDimensions'] = f.grid.astype(np.uint64)
# Quats attributes # Quats attributes
o[cell_data_label + '/Quats'].attrs['ComponentDimensions'] = np.array([4],np.uint64) o[cell_data_label + '/Quats'].attrs['ComponentDimensions'] = np.array([4],np.uint64)
o[cell_data_label + '/Quats'].attrs['ObjectType'] = 'DataArray<float>' o[cell_data_label + '/Quats'].attrs['ObjectType'] = 'DataArray<float>'
o[cell_data_label + '/Quats'].attrs['TupleDimensions'] = f.grid.astype(np.uint64)
# Create EnsembleAttributeMatrix
# Create EnsembleAttributeMatrix
ensemble_label = data_container_label + '/EnsembleAttributeMatrix' ensemble_label = data_container_label + '/EnsembleAttributeMatrix'
# Data CrystalStructures # Data CrystalStructures

21
python/tests/conftest.py Normal file
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@ -0,0 +1,21 @@
import os
import pytest
import damask
def pytest_addoption(parser):
parser.addoption("--update",
action="store_true",
default=False)
@pytest.fixture
def update(request):
"""Store current results as new reference results."""
return request.config.getoption("--update")
@pytest.fixture
def reference_dir_base():
"""Directory containing reference results."""
env = damask.Environment()
return os.path.join(env.rootDir(),'python','tests','reference')

125
python/tests/reference/DADF5/12grains6x7x8.geom Normal file
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@ -0,0 +1,125 @@
68 header
geom_fromVoronoiTessellation 2.0.3-1073-g6f3cb071
<texture>
[Grain1]
(gauss) phi1 358.98 Phi 65.62 phi2 24.48
[Grain2]
(gauss) phi1 121.05 Phi 176.11 phi2 295.73
[Grain3]
(gauss) phi1 43.79 Phi 113.76 phi2 345.90
[Grain4]
(gauss) phi1 265.15 Phi 62.52 phi2 299.71
[Grain5]
(gauss) phi1 221.23 Phi 26.54 phi2 207.05
[Grain6]
(gauss) phi1 249.81 Phi 61.47 phi2 152.14
[Grain7]
(gauss) phi1 332.45 Phi 99.16 phi2 345.34
[Grain8]
(gauss) phi1 312.27 Phi 118.27 phi2 181.59
[Grain9]
(gauss) phi1 303.10 Phi 48.21 phi2 358.03
[Grain10]
(gauss) phi1 338.26 Phi 48.11 phi2 176.78
[Grain11]
(gauss) phi1 115.17 Phi 56.54 phi2 223.84
[Grain12]
(gauss) phi1 281.04 Phi 97.48 phi2 27.94
<microstructure>
[Grain1]
crystallite 1
(constituent) phase 1 texture 1 fraction 1.0
[Grain2]
crystallite 1
(constituent) phase 1 texture 2 fraction 1.0
[Grain3]
crystallite 1
(constituent) phase 1 texture 3 fraction 1.0
[Grain4]
crystallite 1
(constituent) phase 1 texture 4 fraction 1.0
[Grain5]
crystallite 1
(constituent) phase 1 texture 5 fraction 1.0
[Grain6]
crystallite 1
(constituent) phase 1 texture 6 fraction 1.0
[Grain7]
crystallite 1
(constituent) phase 1 texture 7 fraction 1.0
[Grain8]
crystallite 1
(constituent) phase 1 texture 8 fraction 1.0
[Grain9]
crystallite 1
(constituent) phase 1 texture 9 fraction 1.0
[Grain10]
crystallite 1
(constituent) phase 1 texture 10 fraction 1.0
[Grain11]
crystallite 1
(constituent) phase 1 texture 11 fraction 1.0
[Grain12]
crystallite 1
(constituent) phase 1 texture 12 fraction 1.0
<!skip>
grid a 6 b 7 c 8
size x 0.75 y 0.875 z 1.0
origin x 0.0 y 0.0 z 0.0
homogenization 1
9 3 3 10 9 9
9 1 1 1 9 9
9 11 1 1 7 9
7 11 11 7 7 7
7 11 11 7 7 7
12 3 3 10 7 12
12 3 3 10 10 12
12 3 3 1 9 9
9 1 1 1 9 9
9 1 1 1 7 7
7 1 1 7 7 7
12 12 3 7 7 7
12 3 3 3 12 12
12 3 3 3 12 12
12 3 3 1 1 12
9 1 1 1 1 9
6 1 1 1 8 8
7 6 8 8 8 8
12 12 8 8 8 12
12 3 3 3 12 12
12 3 3 3 12 12
5 6 6 6 1 12
6 6 6 6 8 8
6 6 6 8 8 8
8 6 8 8 8 8
12 5 8 8 8 8
12 5 5 8 8 12
5 5 5 3 12 12
5 5 6 6 6 5
6 6 6 6 6 6
6 6 6 6 8 8
4 4 6 8 8 8
4 4 2 2 2 8
5 5 5 2 2 2
5 5 5 5 2 5
5 5 5 10 10 5
6 6 6 6 10 4
4 4 11 11 2 4
4 4 11 2 2 4
4 4 2 2 2 2
5 5 5 2 2 2
5 5 5 10 10 5
5 5 10 10 10 9
4 11 11 11 10 9
4 4 11 11 11 4
4 4 11 11 2 4
4 4 2 2 2 2
5 5 2 2 2 2
5 5 10 10 10 10
9 10 10 10 10 9
9 11 11 10 9 9
4 11 11 11 9 9
4 11 11 11 7 7
4 4 11 2 7 7
12 10 10 10 10 7
9 10 10 10 10 9

BIN
python/tests/reference/DADF5/12grains6x7x8_tensionY.hdf5 Normal file
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129
python/tests/reference/DADF5/material.config Normal file
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@ -0,0 +1,129 @@
<homogenization>
[none]
mech none
ngrains 1
<texture>
[Grain1]
(gauss) phi1 358.98 Phi 65.62 phi2 24.48
[Grain2]
(gauss) phi1 121.05 Phi 176.11 phi2 295.73
[Grain3]
(gauss) phi1 43.79 Phi 113.76 phi2 345.90
[Grain4]
(gauss) phi1 265.15 Phi 62.52 phi2 299.71
[Grain5]
(gauss) phi1 221.23 Phi 26.54 phi2 207.05
[Grain6]
(gauss) phi1 249.81 Phi 61.47 phi2 152.14
[Grain7]
(gauss) phi1 332.45 Phi 99.16 phi2 345.34
[Grain8]
(gauss) phi1 312.27 Phi 118.27 phi2 181.59
[Grain9]
(gauss) phi1 303.10 Phi 48.21 phi2 358.03
[Grain10]
(gauss) phi1 338.26 Phi 48.11 phi2 176.78
[Grain11]
(gauss) phi1 115.17 Phi 56.54 phi2 223.84
[Grain12]
(gauss) phi1 281.04 Phi 97.48 phi2 27.94
<microstructure>
[Grain1]
crystallite 1
(constituent) phase 1 texture 1 fraction 1.0
[Grain2]
crystallite 1
(constituent) phase 1 texture 2 fraction 1.0
[Grain3]
crystallite 1
(constituent) phase 1 texture 3 fraction 1.0
[Grain4]
crystallite 1
(constituent) phase 1 texture 4 fraction 1.0
[Grain5]
crystallite 1
(constituent) phase 1 texture 5 fraction 1.0
[Grain6]
crystallite 1
(constituent) phase 1 texture 6 fraction 1.0
[Grain7]
crystallite 1
(constituent) phase 2 texture 7 fraction 1.0
[Grain8]
crystallite 1
(constituent) phase 2 texture 8 fraction 1.0
[Grain9]
crystallite 1
(constituent) phase 2 texture 9 fraction 1.0
[Grain10]
crystallite 1
(constituent) phase 2 texture 10 fraction 1.0
[Grain11]
crystallite 1
(constituent) phase 2 texture 11 fraction 1.0
[Grain12]
crystallite 1
(constituent) phase 2 texture 12 fraction 1.0
<phase>
[pheno_fcc]
elasticity hooke
plasticity phenopowerlaw
(output) orientation # quaternion
(output) F # deformation gradient tensor
(output) Fe # elastic deformation gradient tensor
(output) Fp # plastic deformation gradient tensor
(output) P # first Piola-Kichhoff stress tensor
(output) Lp # plastic velocity gradient tensor
lattice_structure fcc
Nslip 12 # per family
Ntwin 0 # per family
c11 106.75e9
c12 60.41e9
c44 28.34e9
gdot0_slip 0.001
n_slip 20
tau0_slip 31e6 # per family
tausat_slip 63e6 # per family
a_slip 2.25
h0_slipslip 75e6
interaction_slipslip 1 1 1.4 1.4 1.4 1.4
atol_resistance 1
[pheno_bcc]
elasticity hooke
plasticity phenopowerlaw
(output) orientation # quaternion
(output) F # deformation gradient tensor
(output) Fe # elastic deformation gradient tensor
(output) Fp # plastic deformation gradient tensor
(output) P # first Piola-Kichhoff stress tensor
(output) Lp # plastic velocity gradient tensor
lattice_structure bcc
Nslip 12 # per family
c11 106.75e9
c12 60.41e9
c44 28.34e9
gdot0_slip 0.001
n_slip 20
tau0_slip 31e6 # per family
tausat_slip 63e6 # per family
a_slip 2.25
h0_slipslip 75e6
interaction_slipslip 1 1 1.4 1.4 1.4 1.4
atol_resistance 1
<crystallite>
[dummy]

1
python/tests/reference/DADF5/tensionY.load Normal file
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@ -0,0 +1 @@
fdot * 0 0 0 1.0e-3 0 0 0 * stress 0 * * * * * * * 0 time 20 incs 40 freq 4

25
python/tests/reference/Geom/clean_stencil=1.geom Normal file
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@ -0,0 +1,25 @@
4 header
grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21
1 1 6 26 2 2 5 25
1 1 10 30 2 2 9 29
1 1 14 34 2 2 13 33
1 1 18 38 2 2 17 37
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 5 25 2 2 4 24
1 1 9 29 2 2 8 28
1 1 13 33 2 2 12 32
1 1 17 37 2 2 16 36
1 1 21 41 2 2 20 40

25
python/tests/reference/Geom/clean_stencil=2.geom Normal file
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@ -0,0 +1,25 @@
4 header
grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 1 2 2 2 1 1
1 1 1 2 2 2 2 1
1 1 1 6 2 2 2 5
1 1 1 10 2 2 2 9
1 1 1 14 2 2 2 13
1 1 1 2 2 2 2 1
1 1 1 2 2 2 2 1
1 1 1 6 2 2 2 5
1 1 1 10 2 2 2 9
1 1 1 14 2 2 2 13
1 1 1 3 2 2 2 2
1 1 1 3 2 2 2 2
1 1 1 7 2 2 2 6
1 1 1 11 2 2 2 10
1 1 1 15 2 2 2 14
1 1 1 4 2 2 2 3
1 1 1 4 2 2 2 3
1 1 1 8 2 2 2 7
1 1 1 12 2 2 2 11
1 1 1 16 2 2 2 15

25
python/tests/reference/Geom/clean_stencil=3.geom Normal file
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@ -0,0 +1,25 @@
4 header
grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 1 2 2 2 2 21
1 1 1 2 2 2 2 21
1 1 1 2 2 2 2 25
1 1 1 2 2 2 2 29
1 1 1 2 2 2 2 37
1 1 1 2 2 2 2 21
1 1 1 2 2 2 2 21
1 1 1 2 2 2 2 25
1 1 1 2 2 2 2 29
1 1 1 2 2 2 2 37
1 1 1 2 2 2 2 22
1 1 1 2 2 2 2 22
1 1 1 2 2 2 2 26
1 1 1 2 2 2 2 30
1 1 1 2 2 2 2 38
1 1 1 2 2 2 2 24
1 1 1 2 2 2 2 24
1 1 1 2 2 2 2 28
1 1 1 2 2 2 2 32
1 1 1 2 2 2 2 40

25
python/tests/reference/Geom/clean_stencil=4.geom Normal file
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@ -0,0 +1,25 @@
4 header
grid a 8 b 5 c 4
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 2 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2
1 1 1 1 2 2 2 2

85
python/tests/reference/Geom/mirror_directions=x-y-z_reflect=True.geom Normal file
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@ -0,0 +1,85 @@
4 header
grid a 16 b 10 c 8
size x 1.6e-05 y 1e-05 z 8e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21 21 1 2 2 22 2 1 1
1 1 6 26 2 2 5 25 25 5 2 2 26 6 1 1
1 1 10 30 2 2 9 29 29 9 2 2 30 10 1 1
1 1 14 34 2 2 13 33 33 13 2 2 34 14 1 1
1 1 18 38 2 2 17 37 37 17 2 2 38 18 1 1
1 1 18 38 2 2 17 37 37 17 2 2 38 18 1 1
1 1 14 34 2 2 13 33 33 13 2 2 34 14 1 1
1 1 10 30 2 2 9 29 29 9 2 2 30 10 1 1
1 1 6 26 2 2 5 25 25 5 2 2 26 6 1 1
1 1 2 22 2 2 1 21 21 1 2 2 22 2 1 1
1 1 3 23 2 2 2 22 22 2 2 2 23 3 1 1
1 1 7 27 2 2 6 26 26 6 2 2 27 7 1 1
1 1 11 31 2 2 10 30 30 10 2 2 31 11 1 1
1 1 15 35 2 2 14 34 34 14 2 2 35 15 1 1
1 1 19 39 2 2 18 38 38 18 2 2 39 19 1 1
1 1 19 39 2 2 18 38 38 18 2 2 39 19 1 1
1 1 15 35 2 2 14 34 34 14 2 2 35 15 1 1
1 1 11 31 2 2 10 30 30 10 2 2 31 11 1 1
1 1 7 27 2 2 6 26 26 6 2 2 27 7 1 1
1 1 3 23 2 2 2 22 22 2 2 2 23 3 1 1
1 1 4 24 2 2 3 23 23 3 2 2 24 4 1 1
1 1 8 28 2 2 7 27 27 7 2 2 28 8 1 1
1 1 12 32 2 2 11 31 31 11 2 2 32 12 1 1
1 1 16 36 2 2 15 35 35 15 2 2 36 16 1 1
1 1 20 40 2 2 19 39 39 19 2 2 40 20 1 1
1 1 20 40 2 2 19 39 39 19 2 2 40 20 1 1
1 1 16 36 2 2 15 35 35 15 2 2 36 16 1 1
1 1 12 32 2 2 11 31 31 11 2 2 32 12 1 1
1 1 8 28 2 2 7 27 27 7 2 2 28 8 1 1
1 1 4 24 2 2 3 23 23 3 2 2 24 4 1 1
1 1 5 25 2 2 4 24 24 4 2 2 25 5 1 1
1 1 9 29 2 2 8 28 28 8 2 2 29 9 1 1
1 1 13 33 2 2 12 32 32 12 2 2 33 13 1 1
1 1 17 37 2 2 16 36 36 16 2 2 37 17 1 1
1 1 21 41 2 2 20 40 40 20 2 2 41 21 1 1
1 1 21 41 2 2 20 40 40 20 2 2 41 21 1 1
1 1 17 37 2 2 16 36 36 16 2 2 37 17 1 1
1 1 13 33 2 2 12 32 32 12 2 2 33 13 1 1
1 1 9 29 2 2 8 28 28 8 2 2 29 9 1 1
1 1 5 25 2 2 4 24 24 4 2 2 25 5 1 1
1 1 5 25 2 2 4 24 24 4 2 2 25 5 1 1
1 1 9 29 2 2 8 28 28 8 2 2 29 9 1 1
1 1 13 33 2 2 12 32 32 12 2 2 33 13 1 1
1 1 17 37 2 2 16 36 36 16 2 2 37 17 1 1
1 1 21 41 2 2 20 40 40 20 2 2 41 21 1 1
1 1 21 41 2 2 20 40 40 20 2 2 41 21 1 1
1 1 17 37 2 2 16 36 36 16 2 2 37 17 1 1
1 1 13 33 2 2 12 32 32 12 2 2 33 13 1 1
1 1 9 29 2 2 8 28 28 8 2 2 29 9 1 1
1 1 5 25 2 2 4 24 24 4 2 2 25 5 1 1
1 1 4 24 2 2 3 23 23 3 2 2 24 4 1 1
1 1 8 28 2 2 7 27 27 7 2 2 28 8 1 1
1 1 12 32 2 2 11 31 31 11 2 2 32 12 1 1
1 1 16 36 2 2 15 35 35 15 2 2 36 16 1 1
1 1 20 40 2 2 19 39 39 19 2 2 40 20 1 1
1 1 20 40 2 2 19 39 39 19 2 2 40 20 1 1
1 1 16 36 2 2 15 35 35 15 2 2 36 16 1 1
1 1 12 32 2 2 11 31 31 11 2 2 32 12 1 1
1 1 8 28 2 2 7 27 27 7 2 2 28 8 1 1
1 1 4 24 2 2 3 23 23 3 2 2 24 4 1 1
1 1 3 23 2 2 2 22 22 2 2 2 23 3 1 1
1 1 7 27 2 2 6 26 26 6 2 2 27 7 1 1
1 1 11 31 2 2 10 30 30 10 2 2 31 11 1 1
1 1 15 35 2 2 14 34 34 14 2 2 35 15 1 1
1 1 19 39 2 2 18 38 38 18 2 2 39 19 1 1
1 1 19 39 2 2 18 38 38 18 2 2 39 19 1 1
1 1 15 35 2 2 14 34 34 14 2 2 35 15 1 1
1 1 11 31 2 2 10 30 30 10 2 2 31 11 1 1
1 1 7 27 2 2 6 26 26 6 2 2 27 7 1 1
1 1 3 23 2 2 2 22 22 2 2 2 23 3 1 1
1 1 2 22 2 2 1 21 21 1 2 2 22 2 1 1
1 1 6 26 2 2 5 25 25 5 2 2 26 6 1 1
1 1 10 30 2 2 9 29 29 9 2 2 30 10 1 1
1 1 14 34 2 2 13 33 33 13 2 2 34 14 1 1
1 1 18 38 2 2 17 37 37 17 2 2 38 18 1 1
1 1 18 38 2 2 17 37 37 17 2 2 38 18 1 1
1 1 14 34 2 2 13 33 33 13 2 2 34 14 1 1
1 1 10 30 2 2 9 29 29 9 2 2 30 10 1 1
1 1 6 26 2 2 5 25 25 5 2 2 26 6 1 1
1 1 2 22 2 2 1 21 21 1 2 2 22 2 1 1

25
python/tests/reference/Geom/mirror_directions=x_reflect=False.geom Normal file
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@ -0,0 +1,25 @@
4 header
grid a 14 b 5 c 4
size x 1.4e-05 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21 1 2 2 22 2 1
1 1 6 26 2 2 5 25 5 2 2 26 6 1
1 1 10 30 2 2 9 29 9 2 2 30 10 1
1 1 14 34 2 2 13 33 13 2 2 34 14 1
1 1 18 38 2 2 17 37 17 2 2 38 18 1
1 1 3 23 2 2 2 22 2 2 2 23 3 1
1 1 7 27 2 2 6 26 6 2 2 27 7 1
1 1 11 31 2 2 10 30 10 2 2 31 11 1
1 1 15 35 2 2 14 34 14 2 2 35 15 1
1 1 19 39 2 2 18 38 18 2 2 39 19 1
1 1 4 24 2 2 3 23 3 2 2 24 4 1
1 1 8 28 2 2 7 27 7 2 2 28 8 1
1 1 12 32 2 2 11 31 11 2 2 32 12 1
1 1 16 36 2 2 15 35 15 2 2 36 16 1
1 1 20 40 2 2 19 39 19 2 2 40 20 1
1 1 5 25 2 2 4 24 4 2 2 25 5 1
1 1 9 29 2 2 8 28 8 2 2 29 9 1
1 1 13 33 2 2 12 32 12 2 2 33 13 1
1 1 17 37 2 2 16 36 16 2 2 37 17 1
1 1 21 41 2 2 20 40 20 2 2 41 21 1

53
python/tests/reference/Geom/mirror_directions=y-z_reflect=False.geom Normal file
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@ -0,0 +1,53 @@
4 header
grid a 8 b 8 c 6
size x 8e-06 y 8.000000000000001e-06 z 6e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21
1 1 6 26 2 2 5 25
1 1 10 30 2 2 9 29
1 1 14 34 2 2 13 33
1 1 18 38 2 2 17 37
1 1 14 34 2 2 13 33
1 1 10 30 2 2 9 29
1 1 6 26 2 2 5 25
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 15 35 2 2 14 34
1 1 11 31 2 2 10 30
1 1 7 27 2 2 6 26
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 16 36 2 2 15 35
1 1 12 32 2 2 11 31
1 1 8 28 2 2 7 27
1 1 5 25 2 2 4 24
1 1 9 29 2 2 8 28
1 1 13 33 2 2 12 32
1 1 17 37 2 2 16 36
1 1 21 41 2 2 20 40
1 1 17 37 2 2 16 36
1 1 13 33 2 2 12 32
1 1 9 29 2 2 8 28
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 16 36 2 2 15 35
1 1 12 32 2 2 11 31
1 1 8 28 2 2 7 27
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 15 35 2 2 14 34
1 1 11 31 2 2 10 30
1 1 7 27 2 2 6 26

53
python/tests/reference/Geom/mirror_directions=z-x-y_reflect=False.geom Normal file
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@ -0,0 +1,53 @@
4 header
grid a 14 b 8 c 6
size x 1.4e-05 y 8.000000000000001e-06 z 6e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21 1 2 2 22 2 1
1 1 6 26 2 2 5 25 5 2 2 26 6 1
1 1 10 30 2 2 9 29 9 2 2 30 10 1
1 1 14 34 2 2 13 33 13 2 2 34 14 1
1 1 18 38 2 2 17 37 17 2 2 38 18 1
1 1 14 34 2 2 13 33 13 2 2 34 14 1
1 1 10 30 2 2 9 29 9 2 2 30 10 1
1 1 6 26 2 2 5 25 5 2 2 26 6 1
1 1 3 23 2 2 2 22 2 2 2 23 3 1
1 1 7 27 2 2 6 26 6 2 2 27 7 1
1 1 11 31 2 2 10 30 10 2 2 31 11 1
1 1 15 35 2 2 14 34 14 2 2 35 15 1
1 1 19 39 2 2 18 38 18 2 2 39 19 1
1 1 15 35 2 2 14 34 14 2 2 35 15 1
1 1 11 31 2 2 10 30 10 2 2 31 11 1
1 1 7 27 2 2 6 26 6 2 2 27 7 1
1 1 4 24 2 2 3 23 3 2 2 24 4 1
1 1 8 28 2 2 7 27 7 2 2 28 8 1
1 1 12 32 2 2 11 31 11 2 2 32 12 1
1 1 16 36 2 2 15 35 15 2 2 36 16 1
1 1 20 40 2 2 19 39 19 2 2 40 20 1
1 1 16 36 2 2 15 35 15 2 2 36 16 1
1 1 12 32 2 2 11 31 11 2 2 32 12 1
1 1 8 28 2 2 7 27 7 2 2 28 8 1
1 1 5 25 2 2 4 24 4 2 2 25 5 1
1 1 9 29 2 2 8 28 8 2 2 29 9 1
1 1 13 33 2 2 12 32 12 2 2 33 13 1
1 1 17 37 2 2 16 36 16 2 2 37 17 1
1 1 21 41 2 2 20 40 20 2 2 41 21 1
1 1 17 37 2 2 16 36 16 2 2 37 17 1
1 1 13 33 2 2 12 32 12 2 2 33 13 1
1 1 9 29 2 2 8 28 8 2 2 29 9 1
1 1 4 24 2 2 3 23 3 2 2 24 4 1
1 1 8 28 2 2 7 27 7 2 2 28 8 1
1 1 12 32 2 2 11 31 11 2 2 32 12 1
1 1 16 36 2 2 15 35 15 2 2 36 16 1
1 1 20 40 2 2 19 39 19 2 2 40 20 1
1 1 16 36 2 2 15 35 15 2 2 36 16 1
1 1 12 32 2 2 11 31 11 2 2 32 12 1
1 1 8 28 2 2 7 27 7 2 2 28 8 1
1 1 3 23 2 2 2 22 2 2 2 23 3 1
1 1 7 27 2 2 6 26 6 2 2 27 7 1
1 1 11 31 2 2 10 30 10 2 2 31 11 1
1 1 15 35 2 2 14 34 14 2 2 35 15 1
1 1 19 39 2 2 18 38 18 2 2 39 19 1
1 1 15 35 2 2 14 34 14 2 2 35 15 1
1 1 11 31 2 2 10 30 10 2 2 31 11 1
1 1 7 27 2 2 6 26 6 2 2 27 7 1

105
python/tests/reference/Geom/scale_grid=10-10-10.geom Normal file
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@ -0,0 +1,105 @@
4 header
grid a 10 b 10 c 10
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40

115
python/tests/reference/Geom/scale_grid=10-11-10.geom Normal file
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@ -0,0 +1,115 @@
4 header
grid a 10 b 11 c 10
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40

135
python/tests/reference/Geom/scale_grid=10-13-10.geom Normal file
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@ -0,0 +1,135 @@
4 header
grid a 10 b 13 c 10
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 3 3 23 2 2 2 2 22
1 1 3 3 23 2 2 2 2 22
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 7 7 27 2 2 2 6 26
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 11 11 31 2 2 2 10 30
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 15 15 35 2 2 2 14 34
1 1 19 19 39 2 2 2 18 38
1 1 19 19 39 2 2 2 18 38
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 4 4 24 2 2 2 3 23
1 1 4 4 24 2 2 2 3 23
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 8 8 28 2 2 2 7 27
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 12 12 32 2 2 2 11 31
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 16 16 36 2 2 2 15 35
1 1 20 20 40 2 2 2 19 39
1 1 20 20 40 2 2 2 19 39
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40

45
python/tests/reference/Geom/scale_grid=10-20-2.geom Normal file
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@ -0,0 +1,45 @@
4 header
grid a 10 b 20 c 2
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 2 2 22 2 2 2 1 21
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 6 6 26 2 2 2 5 25
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 10 10 30 2 2 2 9 29
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 14 14 34 2 2 2 13 33
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 18 18 38 2 2 2 17 37
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 5 5 25 2 2 2 4 24
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 9 9 29 2 2 2 8 28
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 13 13 33 2 2 2 12 32
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 17 17 37 2 2 2 16 36
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40
1 1 21 21 41 2 2 2 20 40

85
python/tests/reference/Geom/scale_grid=5-4-20.geom Normal file
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@ -0,0 +1,85 @@
4 header
grid a 5 b 4 c 20
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 2 2 2 21
1 6 2 2 25
1 14 2 2 33
1 18 2 2 37
1 2 2 2 21
1 6 2 2 25
1 14 2 2 33
1 18 2 2 37
1 2 2 2 21
1 6 2 2 25
1 14 2 2 33
1 18 2 2 37
1 2 2 2 21
1 6 2 2 25
1 14 2 2 33
1 18 2 2 37
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 3 2 2 22
1 7 2 2 26
1 15 2 2 34
1 19 2 2 38
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 4 2 2 23
1 8 2 2 27
1 16 2 2 35
1 20 2 2 39
1 5 2 2 24
1 9 2 2 28
1 17 2 2 36
1 21 2 2 40
1 5 2 2 24
1 9 2 2 28
1 17 2 2 36
1 21 2 2 40
1 5 2 2 24
1 9 2 2 28
1 17 2 2 36
1 21 2 2 40
1 5 2 2 24
1 9 2 2 28
1 17 2 2 36
1 21 2 2 40

125
python/tests/reference/Geom/scale_grid=8-10-12.geom Normal file
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@ -0,0 +1,125 @@
4 header
grid a 8 b 10 c 12
size x 8e-06 y 5e-06 z 4e-06
origin x 0.0 y 0.0 z 0.0
homogenization 1
1 1 2 22 2 2 1 21
1 1 2 22 2 2 1 21
1 1 6 26 2 2 5 25
1 1 6 26 2 2 5 25
1 1 10 30 2 2 9 29
1 1 10 30 2 2 9 29
1 1 14 34 2 2 13 33
1 1 14 34 2 2 13 33
1 1 18 38 2 2 17 37
1 1 18 38 2 2 17 37
1 1 2 22 2 2 1 21
1 1 2 22 2 2 1 21
1 1 6 26 2 2 5 25
1 1 6 26 2 2 5 25
1 1 10 30 2 2 9 29
1 1 10 30 2 2 9 29
1 1 14 34 2 2 13 33
1 1 14 34 2 2 13 33
1 1 18 38 2 2 17 37
1 1 18 38 2 2 17 37
1 1 3 23 2 2 2 22
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 19 39 2 2 18 38
1 1 3 23 2 2 2 22
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 19 39 2 2 18 38
1 1 3 23 2 2 2 22
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 19 39 2 2 18 38
1 1 3 23 2 2 2 22
1 1 3 23 2 2 2 22
1 1 7 27 2 2 6 26
1 1 7 27 2 2 6 26
1 1 11 31 2 2 10 30
1 1 11 31 2 2 10 30
1 1 15 35 2 2 14 34
1 1 15 35 2 2 14 34
1 1 19 39 2 2 18 38
1 1 19 39 2 2 18 38
1 1 4 24 2 2 3 23
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 20 40 2 2 19 39
1 1 4 24 2 2 3 23
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 20 40 2 2 19 39
1 1 4 24 2 2 3 23
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 20 40 2 2 19 39
1 1 4 24 2 2 3 23
1 1 4 24 2 2 3 23
1 1 8 28 2 2 7 27
1 1 8 28 2 2 7 27
1 1 12 32 2 2 11 31
1 1 12 32 2 2 11 31
1 1 16 36 2 2 15 35
1 1 16 36 2 2 15 35
1 1 20 40 2 2 19 39
1 1 20 40 2 2 19 39
1 1 5 25 2 2 4 24
1 1 5 25 2 2 4 24
1 1 9 29 2 2 8 28
1 1 9 29 2 2 8 28
1 1 13 33 2 2 12 32
1 1 13 33 2 2 12 32
1 1 17 37 2 2 16 36
1 1 17 37 2 2 16 36
1 1 21 41 2 2 20 40
1 1 21 41 2 2 20 40
1 1 5 25 2 2 4 24
1 1 5 25 2 2 4 24
1 1 9 29 2 2 8 28
1 1 9 29 2 2 8 28
1 1 13 33 2 2 12 32
1 1 13 33 2 2 12 32
1 1 17 37 2 2 16 36
1 1 17 37 2 2 16 36
1 1 21 41 2 2 20 40
1 1 21 41 2 2 20 40

67
python/tests/test_DADF5.py Normal file
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import shutil
import os
import pytest
import numpy as np
from damask import DADF5
from damask import mechanics
@pytest.fixture
def default(tmp_path,reference_dir):
"""Small DADF5 file in temp location for modification."""
fname = '12grains6x7x8_tensionY.hdf5'
shutil.copy(os.path.join(reference_dir,fname),tmp_path)
f = DADF5(os.path.join(tmp_path,fname))
f.set_by_time(20.0,20.0)
return f
@pytest.fixture
def reference_dir(reference_dir_base):
"""Directory containing reference results."""
return os.path.join(reference_dir_base,'DADF5')
class TestDADF5:
def test_add_deviator(self,default):
default.add_deviator('P')
loc = {'P' :default.get_dataset_location('P'),
's_P':default.get_dataset_location('s_P')}
in_memory = mechanics.deviatoric_part(default.read_dataset(loc['P'],0))
in_file = default.read_dataset(loc['s_P'],0)
assert np.allclose(in_memory,in_file)
def test_add_Cauchy(self,default):
default.add_Cauchy('P','F')
loc = {'F': default.get_dataset_location('F'),
'P': default.get_dataset_location('P'),
'sigma':default.get_dataset_location('sigma')}
in_memory = mechanics.Cauchy(default.read_dataset(loc['F'],0),
default.read_dataset(loc['P'],0))
in_file = default.read_dataset(loc['sigma'],0)
assert np.allclose(in_memory,in_file)
def test_add_absolute(self,default):
default.add_absolute('Fe')
loc = {'Fe': default.get_dataset_location('Fe'),
'|Fe|': default.get_dataset_location('|Fe|')}
in_memory = np.abs(default.read_dataset(loc['Fe'],0))
in_file = default.read_dataset(loc['|Fe|'],0)
assert np.allclose(in_memory,in_file)
def test_add_determinant(self,default):
default.add_determinant('P')
loc = {'P': default.get_dataset_location('P'),
'det(P)': default.get_dataset_location('det(P)')}
in_memory = np.linalg.det(default.read_dataset(loc['P'],0)).reshape(-1,1)
in_file = default.read_dataset(loc['det(P)'],0)
assert np.allclose(in_memory,in_file)
def test_add_spherical(self,default):
default.add_spherical('P')
loc = {'P': default.get_dataset_location('P'),
'p_P': default.get_dataset_location('p_P')}
in_memory = mechanics.spherical_part(default.read_dataset(loc['P'],0)).reshape(-1,1)
in_file = default.read_dataset(loc['p_P'],0)
assert np.allclose(in_memory,in_file)

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import copy
import os
import pytest
import numpy as np
from damask import Geom
def geom_equal(a,b):
return np.all(a.get_microstructure() == b.get_microstructure()) and \
np.all(a.get_size() == b.get_size()) and \
np.all(a.get_grid() == b.get_grid())
@pytest.fixture
def default():
"""Simple geometry."""
x=np.concatenate((np.ones(40,dtype=int),
np.arange(2,42),
np.ones(40,dtype=int)*2,
np.arange(1,41))).reshape((8,5,4))
return Geom(x,[8e-6,5e-6,4e-6])
@pytest.fixture
def reference_dir(reference_dir_base):
"""Directory containing reference results."""
return os.path.join(reference_dir_base,'Geom')
class TestGeom:
def test_update(self,default):
modified = copy.deepcopy(default)
modified.update(
default.get_microstructure(),
default.get_size(),
default.get_origin()
)
assert geom_equal(modified,default)
def test_write_read_str(self,default,tmpdir):
default.to_file(str(tmpdir.join('default.geom')))
new = Geom.from_file(str(tmpdir.join('default.geom')))
assert geom_equal(new,default)
def test_write_read_file(self,default,tmpdir):
with open(tmpdir.join('default.geom'),'w') as f:
default.to_file(f)
with open(tmpdir.join('default.geom')) as f:
new = Geom.from_file(f)
assert geom_equal(new,default)
@pytest.mark.parametrize('pack',[True,False])
def test_pack(self,default,tmpdir,pack):
default.to_file(tmpdir.join('default.geom'),pack=pack)
new = Geom.from_file(tmpdir.join('default.geom'))
assert geom_equal(new,default)
@pytest.mark.parametrize('directions,reflect',[
(['x'], False),
(['x','y','z'],True),
(['z','x','y'],False),
(['y','z'], False)
]
)
def test_mirror(self,default,update,reference_dir,directions,reflect):
modified = copy.deepcopy(default)
modified.mirror(directions,reflect)
tag = 'directions={}_reflect={}'.format('-'.join(directions),reflect)
reference = os.path.join(reference_dir,'mirror_{}.geom'.format(tag))
if update: modified.to_file(reference)
assert geom_equal(modified,Geom.from_file(reference))
@pytest.mark.parametrize('stencil',[(1),(2),(3),(4)])
def test_clean(self,default,update,reference_dir,stencil):
modified = copy.deepcopy(default)
modified.clean(stencil)
tag = 'stencil={}'.format(stencil)
reference = os.path.join(reference_dir,'clean_{}.geom'.format(tag))
if update: modified.to_file(reference)
assert geom_equal(modified,Geom.from_file(reference))
@pytest.mark.parametrize('grid',[
((10,11,10)),
([10,13,10]),
(np.array((10,10,10))),
(np.array((8, 10,12))),
(np.array((5, 4, 20))),
(np.array((10,20,2)) )
]
)
def test_scale(self,default,update,reference_dir,grid):
modified = copy.deepcopy(default)
modified.scale(grid)
tag = 'grid={}'.format('-'.join([str(x) for x in grid]))
reference = os.path.join(reference_dir,'scale_{}.geom'.format(tag))
if update: modified.to_file(reference)
assert geom_equal(modified,Geom.from_file(reference))

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import pytest
import numpy as np
from damask import Rotation
n = 1000
@pytest.fixture
def default():
"""A set of n random rotations."""
return [Rotation.fromRandom() for r in range(n)]
class TestRotation:
def test_Eulers(self,default):
for rot in default:
assert np.allclose(rot.asQuaternion(),
Rotation.fromEulers(rot.asEulers()).asQuaternion())
def test_AxisAngle(self,default):
for rot in default:
assert np.allclose(rot.asEulers(),
Rotation.fromAxisAngle(rot.asAxisAngle()).asEulers())
def test_Matrix(self,default):
for rot in default:
assert np.allclose(rot.asAxisAngle(),
Rotation.fromMatrix(rot.asMatrix()).asAxisAngle())
def test_Rodriques(self,default):
for rot in default:
assert np.allclose(rot.asMatrix(),
Rotation.fromRodrigues(rot.asRodrigues()).asMatrix())
def test_Homochoric(self,default):
for rot in default:
assert np.allclose(rot.asRodrigues(),
Rotation.fromHomochoric(rot.asHomochoric()).asRodrigues())
def test_Cubochoric(self,default):
for rot in default:
assert np.allclose(rot.asHomochoric(),
Rotation.fromCubochoric(rot.asCubochoric()).asHomochoric())
def test_Quaternion(self,default):
for rot in default:
assert np.allclose(rot.asCubochoric(),
Rotation.fromQuaternion(rot.asQuaternion()).asCubochoric())

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import numpy as np
from damask import mechanics
class TestMechanics:
n = 1000
c = np.random.randint(n)
def test_vectorize_Cauchy(self):
P = np.random.random((self.n,3,3))
F = np.random.random((self.n,3,3))
assert np.allclose(mechanics.Cauchy(F,P)[self.c],
mechanics.Cauchy(F[self.c],P[self.c]))
def test_vectorize_strain_tensor(self):
F = np.random.random((self.n,3,3))
t = ['V','U'][np.random.randint(0,2)]
m = np.random.random()*10. -5.0
assert np.allclose(mechanics.strain_tensor(F,t,m)[self.c],
mechanics.strain_tensor(F[self.c],t,m))
def test_vectorize_deviatoric_part(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.deviatoric_part(x)[self.c],
mechanics.deviatoric_part(x[self.c]))
def test_vectorize_spherical_part(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.spherical_part(x)[self.c],
mechanics.spherical_part(x[self.c]))
def test_vectorize_Mises_stress(self):
sigma = np.random.random((self.n,3,3))
assert np.allclose(mechanics.Mises_stress(sigma)[self.c],
mechanics.Mises_stress(sigma[self.c]))
def test_vectorize_Mises_strain(self):
epsilon = np.random.random((self.n,3,3))
assert np.allclose(mechanics.Mises_strain(epsilon)[self.c],
mechanics.Mises_strain(epsilon[self.c]))
def test_vectorize_symmetric(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.symmetric(x)[self.c],
mechanics.symmetric(x[self.c]))
def test_vectorize_maximum_shear(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.maximum_shear(x)[self.c],
mechanics.maximum_shear(x[self.c]))
def test_vectorize_principal_components(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.principal_components(x)[self.c],
mechanics.principal_components(x[self.c]))
def test_vectorize_transpose(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.transpose(x)[self.c],
mechanics.transpose(x[self.c]))
def test_vectorize_rotational_part(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.rotational_part(x)[self.c],
mechanics.rotational_part(x[self.c]))
def test_vectorize_left_stretch(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.left_stretch(x)[self.c],
mechanics.left_stretch(x[self.c]))
def test_vectorize_right_stretch(self):
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.right_stretch(x)[self.c],
mechanics.right_stretch(x[self.c]))
def test_Cauchy(self):
"""Ensure Cauchy stress is symmetrized 1. Piola-Kirchhoff stress for no deformation."""
P = np.random.random((self.n,3,3))
assert np.allclose(mechanics.Cauchy(np.broadcast_to(np.eye(3),(self.n,3,3)),P),
mechanics.symmetric(P))
def test_strain_tensor_no_rotation(self):
"""Ensure that left and right stretch give same results for no rotation."""
F = np.broadcast_to(np.eye(3),[self.n,3,3])*np.random.random((self.n,3,3))
m = np.random.random()*20.0-10.0
assert np.allclose(mechanics.strain_tensor(F,'U',m),
mechanics.strain_tensor(F,'V',m))
def test_strain_tensor_rotation(self):
"""Ensure that pure rotation results in no strain."""
F = mechanics.rotational_part(np.random.random((self.n,3,3)))
t = ['V','U'][np.random.randint(0,2)]
m = np.random.random()*2.0 - 1.0
assert np.allclose(mechanics.strain_tensor(F,t,m),
0.0)
def test_spherical_deviatoric_part(self):
"""Ensure that full tensor is sum of spherical and deviatoric part."""
x = np.random.random((self.n,3,3))
sph = np.broadcast_to(np.eye(3),(self.n,3,3))\
* np.repeat(mechanics.spherical_part(x),9).reshape(self.n,3,3)
assert np.allclose(sph + mechanics.deviatoric_part(x),
x)
def test_symmetric(self):
"""Ensure that a symmetric tensor is half of the sum of a tensor and its transpose."""
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.symmetric(x)*2.0,
mechanics.transpose(x)+x)
def test_transpose(self):
"""Ensure that a symmetric tensor equals its transpose."""
x = mechanics.symmetric(np.random.random((self.n,3,3)))
assert np.allclose(mechanics.transpose(x),
x)
def test_Mises(self):
"""Ensure that equivalent stress is 3/2 of equivalent strain."""
x = np.random.random((self.n,3,3))
assert np.allclose(mechanics.Mises_stress(x)/mechanics.Mises_strain(x),
1.5)