Merge branch 'hdf5-error-stop' into development
This commit is contained in:
Sharan Roongta
commit
1f59f63011
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@ -12,11 +12,10 @@ module HDF5_utilities
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use prec
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use parallelization
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use IO
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use rotations
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implicit none
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public
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implicit none
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public
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!--------------------------------------------------------------------------------------------------
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!> @brief reads integer or float data of defined shape from file ! ToDo: order of arguments wrong
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@ -93,15 +92,15 @@ subroutine HDF5_utilities_init
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!--------------------------------------------------------------------------------------------------
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!initialize HDF5 library and check if integer and float type size match
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call h5open_f(hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5open_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
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if(hdferr < 0) error stop 'HDF5 error'
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if (int(bit_size(0),SIZE_T)/=typeSize*8) &
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error stop 'Default integer size does not match H5T_NATIVE_INTEGER'
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call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
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if(hdferr < 0) error stop 'HDF5 error'
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if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) &
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error stop 'pReal does not match H5T_NATIVE_DOUBLE'
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@ -128,30 +127,30 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
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endif
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call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pcreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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#ifdef PETSc
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if (present(parallel)) then; if (parallel) then
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call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pset_fapl_mpio_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif; endif
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#endif
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if (m == 'w') then
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call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fcreate_f (w)')
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if(hdferr < 0) error stop 'HDF5 error'
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elseif(m == 'a') then
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call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (a)')
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if(hdferr < 0) error stop 'HDF5 error'
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elseif(m == 'r') then
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call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (r)')
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if(hdferr < 0) error stop 'HDF5 error'
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else
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call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f unknown access mode: '//trim(m))
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error stop 'unknown access mode'
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endif
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call h5pclose_f(plist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end function HDF5_openFile
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@ -166,7 +165,7 @@ subroutine HDF5_closeFile(fileHandle)
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integer :: hdferr
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call h5fclose_f(fileHandle,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_closeFile: h5fclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_closeFile
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@ -185,19 +184,19 @@ integer(HID_T) function HDF5_addGroup(fileHandle,groupName)
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!-------------------------------------------------------------------------------------------------
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! creating a property list for data access properties
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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!-------------------------------------------------------------------------------------------------
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! setting I/O mode to collective
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#ifdef PETSc
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call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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#endif
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!-------------------------------------------------------------------------------------------------
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! Create group
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call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5pclose_f(aplist_id,hdferr)
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@ -221,19 +220,19 @@ integer(HID_T) function HDF5_openGroup(fileHandle,groupName)
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!-------------------------------------------------------------------------------------------------
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! creating a property list for data access properties
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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!-------------------------------------------------------------------------------------------------
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! setting I/O mode to collective
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#ifdef PETSc
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call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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#endif
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!-------------------------------------------------------------------------------------------------
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! opening the group
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call h5gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5gopen_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5pclose_f(aplist_id,hdferr)
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@ -250,7 +249,7 @@ subroutine HDF5_closeGroup(group_id)
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integer :: hdferr
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call h5gclose_f(group_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(group_id))
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_closeGroup
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@ -273,11 +272,11 @@ logical function HDF5_objectExists(loc_id,path)
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endif
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call h5lexists_f(loc_id, p, HDF5_objectExists, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if(HDF5_objectExists) then
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call h5oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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end function HDF5_objectExists
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@ -309,25 +308,25 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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ptr(1) = c_loc(attrValue_)
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tcopy_f(H5T_STRING, type_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tcopy_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, type_id, c_loc(ptr(1)), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tclose_f(type_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_str
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@ -354,21 +353,21 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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endif
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_int
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@ -395,21 +394,21 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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endif
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_real
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@ -439,21 +438,21 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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array_size = size(attrValue,kind=HSIZE_T)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_int_array
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@ -483,21 +482,21 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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array_size = size(attrValue,kind=HSIZE_T)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine HDF5_addAttribute_real_array
|
||||
|
||||
|
|
@ -513,13 +512,13 @@ subroutine HDF5_setLink(loc_id,target_name,link_name)
|
|||
logical :: linkExists
|
||||
|
||||
call h5lexists_f(loc_id, link_name,linkExists, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lexists_soft_f ('//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
if (linkExists) then
|
||||
call h5ldelete_f(loc_id,link_name, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5ldelete_soft_f ('//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
call h5lcreate_soft_f(target_name, loc_id, link_name, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lcreate_soft_f ('//trim(target_name)//' '//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine HDF5_setLink
|
||||
|
||||
|
|
@ -558,7 +557,7 @@ subroutine HDF5_read_real1(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real1: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -598,7 +597,7 @@ subroutine HDF5_read_real2(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real2: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -638,7 +637,7 @@ subroutine HDF5_read_real3(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real3: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -678,7 +677,7 @@ subroutine HDF5_read_real4(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real4: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -718,7 +717,7 @@ subroutine HDF5_read_real5(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real5: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -758,7 +757,7 @@ subroutine HDF5_read_real6(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real6: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -798,7 +797,7 @@ subroutine HDF5_read_real7(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real7: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -840,7 +839,7 @@ subroutine HDF5_read_int1(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int1: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -880,7 +879,7 @@ subroutine HDF5_read_int2(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int2: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -920,7 +919,7 @@ subroutine HDF5_read_int3(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int3: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -960,7 +959,7 @@ subroutine HDF5_read_int4(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int4: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -1000,7 +999,7 @@ subroutine HDF5_read_int5(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int5: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -1040,7 +1039,7 @@ subroutine HDF5_read_int6(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int6: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -1080,7 +1079,7 @@ subroutine HDF5_read_int7(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int7: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
|
@ -1121,7 +1120,7 @@ subroutine HDF5_write_real1(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real1: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1162,7 +1161,7 @@ subroutine HDF5_write_real2(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real2: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1203,7 +1202,7 @@ subroutine HDF5_write_real3(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real3: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1244,7 +1243,7 @@ subroutine HDF5_write_real4(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real4: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1286,7 +1285,7 @@ subroutine HDF5_write_real5(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real5: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1327,7 +1326,7 @@ subroutine HDF5_write_real6(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real6: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1368,7 +1367,7 @@ subroutine HDF5_write_real7(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real7: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1410,7 +1409,7 @@ subroutine HDF5_write_int1(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int1: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1451,7 +1450,7 @@ subroutine HDF5_write_int2(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int2: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1492,7 +1491,7 @@ subroutine HDF5_write_int3(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int3: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1533,7 +1532,7 @@ subroutine HDF5_write_int4(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int4: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1574,7 +1573,7 @@ subroutine HDF5_write_int5(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int5: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1615,7 +1614,7 @@ subroutine HDF5_write_int6(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int6: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1656,7 +1655,7 @@ subroutine HDF5_write_int7(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int7: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1732,7 +1731,7 @@ subroutine HDF5_write_rotation(loc_id,dataset,datasetName,parallel)
|
|||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
call h5dwrite_f(dset_id, z_id,dataset_asArray(4,:),int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_rotation: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
|
@ -1765,7 +1764,7 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
!-------------------------------------------------------------------------------------------------
|
||||
! creating a property list for transfer properties (is collective for MPI)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
readSize = 0
|
||||
|
|
@ -1773,9 +1772,9 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_dxpl_mpio_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='initialize_read: MPI_allreduce')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
endif
|
||||
#endif
|
||||
myStart = int(0,HSIZE_T)
|
||||
|
|
@ -1785,28 +1784,28 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape)
|
||||
call h5screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5screate_simple_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! creating a property list for IO and set it to collective
|
||||
call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#ifdef PETSc
|
||||
call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_all_coll_metadata_ops_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#endif
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! open the dataset in the file and get the space ID
|
||||
call h5dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dopen_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dget_space_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! select a hyperslab (the portion of the current process) in the file
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5sselect_hyperslab_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine initialize_read
|
||||
|
||||
|
|
@ -1820,15 +1819,15 @@ subroutine finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|||
integer :: hdferr
|
||||
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: plist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5pclose_f(aplist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: aplist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5dclose_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/filespace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine finalize_read
|
||||
|
||||
|
|
@ -1859,11 +1858,11 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
!-------------------------------------------------------------------------------------------------
|
||||
! creating a property list for transfer properties (is collective when reading in parallel)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pset_dxpl_mpio_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
#endif
|
||||
|
||||
|
|
@ -1874,7 +1873,7 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='initialize_write: MPI_allreduce')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
endif
|
||||
#endif
|
||||
myStart = int(0,HSIZE_T)
|
||||
|
|
@ -1884,16 +1883,16 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape) and in file (global shape)
|
||||
call h5screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dopen_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dget_space_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataset in the file and select a hyperslab from it (the portion of the current process)
|
||||
call h5dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5sselect_hyperslab_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine initialize_write
|
||||
|
||||
|
|
@ -1907,13 +1906,13 @@ subroutine finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|||
integer :: hdferr
|
||||
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: plist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5dclose_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/filespace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine finalize_write
|
||||
|
||||
|
|
|
|||
43
src/IO.f90
43
src/IO.f90
|
|
@ -367,12 +367,8 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
! file handling errors
|
||||
case (100)
|
||||
msg = 'could not open file:'
|
||||
case (101)
|
||||
msg = 'write error for file:'
|
||||
case (102)
|
||||
msg = 'could not read file:'
|
||||
case (106)
|
||||
msg = 'working directory does not exist:'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! file parsing errors
|
||||
|
|
@ -395,14 +391,10 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
msg = 'hex lattice structure with invalid c/a ratio'
|
||||
case (132)
|
||||
msg = 'trans_lattice_structure not possible'
|
||||
case (133)
|
||||
msg = 'transformed hex lattice structure with invalid c/a ratio'
|
||||
case (134)
|
||||
msg = 'negative lattice parameter'
|
||||
case (135)
|
||||
msg = 'zero entry on stiffness diagonal'
|
||||
case (136)
|
||||
msg = 'zero entry on stiffness diagonal for transformed phase'
|
||||
case (137)
|
||||
msg = 'not defined for lattice structure'
|
||||
case (138)
|
||||
|
|
@ -431,8 +423,6 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
! material error messages and related messages in mesh
|
||||
case (150)
|
||||
msg = 'index out of bounds'
|
||||
case (151)
|
||||
msg = 'material has no constituents'
|
||||
case (153)
|
||||
msg = 'sum of phase fractions differs from 1'
|
||||
case (155)
|
||||
|
|
@ -463,10 +453,6 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! math errors
|
||||
case (400)
|
||||
msg = 'matrix inversion error'
|
||||
case (401)
|
||||
msg = 'error in Eigenvalue calculation'
|
||||
case (402)
|
||||
msg = 'invalid orientation specified'
|
||||
|
||||
|
|
@ -499,10 +485,6 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
|||
|
||||
!-------------------------------------------------------------------------------------------------
|
||||
! errors related to the grid solver
|
||||
case (809)
|
||||
msg = 'initializing FFTW'
|
||||
case (810)
|
||||
msg = 'FFTW plan creation'
|
||||
case (831)
|
||||
msg = 'mask consistency violated in grid load case'
|
||||
case (832)
|
||||
|
|
@ -587,45 +569,20 @@ subroutine IO_warning(warning_ID,el,ip,g,ext_msg)
|
|||
character(len=pStringLen) :: formatString
|
||||
|
||||
select case (warning_ID)
|
||||
case (1)
|
||||
msg = 'unknown key'
|
||||
case (34)
|
||||
msg = 'invalid restart increment given'
|
||||
case (35)
|
||||
msg = 'could not get $DAMASK_NUM_THREADS'
|
||||
case (40)
|
||||
msg = 'found spectral solver parameter'
|
||||
case (42)
|
||||
msg = 'parameter has no effect'
|
||||
case (43)
|
||||
msg = 'main diagonal of C66 close to zero'
|
||||
case (47)
|
||||
msg = 'no valid parameter for FFTW, using FFTW_PATIENT'
|
||||
case (50)
|
||||
msg = 'not all available slip system families are defined'
|
||||
case (51)
|
||||
msg = 'not all available twin system families are defined'
|
||||
case (52)
|
||||
msg = 'not all available parameters are defined'
|
||||
case (53)
|
||||
msg = 'not all available transformation system families are defined'
|
||||
case (101)
|
||||
msg = 'crystallite debugging off'
|
||||
case (201)
|
||||
msg = 'position not found when parsing line'
|
||||
case (207)
|
||||
msg = 'line truncated'
|
||||
case (600)
|
||||
msg = 'crystallite responds elastically'
|
||||
case (601)
|
||||
msg = 'stiffness close to zero'
|
||||
case (650)
|
||||
msg = 'polar decomposition failed'
|
||||
case (700)
|
||||
msg = 'unknown crystal symmetry'
|
||||
case (709)
|
||||
msg = 'read only the first document'
|
||||
|
||||
case (850)
|
||||
msg = 'max number of cut back exceeded, terminating'
|
||||
case default
|
||||
|
|
|
|||
|
|
@ -84,6 +84,8 @@ subroutine discretization_grid_init(restart)
|
|||
PETSC_COMM_WORLD, &
|
||||
z, & ! domain grid size along z
|
||||
z_offset) ! domain grid offset along z
|
||||
if(z==0_C_INTPTR_T) call IO_error(894, ext_msg='Cannot distribute MPI processes')
|
||||
|
||||
grid3 = int(z)
|
||||
grid3Offset = int(z_offset)
|
||||
size3 = geomSize(3)*real(grid3,pReal) /real(grid(3),pReal)
|
||||
|
|
|
|||
|
|
@ -95,10 +95,10 @@ subroutine grid_damage_spectral_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set default and user defined options for PETSc
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,'-damage_snes_type newtonls -damage_snes_mf &
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,'-damage_snes_type newtonls -damage_snes_mf &
|
||||
&-damage_snes_ksp_ew -damage_ksp_type fgmres',ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -13,6 +13,7 @@ module grid_mech_FEM
|
|||
use prec
|
||||
use parallelization
|
||||
use DAMASK_interface
|
||||
use IO
|
||||
use HDF5_utilities
|
||||
use math
|
||||
use spectral_utilities
|
||||
|
|
@ -141,10 +142,10 @@ subroutine grid_mech_FEM_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set default and user defined options for PETSc
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type newtonls -mech_ksp_type fgmres &
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type newtonls -mech_ksp_type fgmres &
|
||||
&-mech_ksp_max_it 25 -mech_pc_type ml -mech_mg_levels_ksp_type chebyshev',ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -13,6 +13,7 @@ module grid_mech_spectral_basic
|
|||
use prec
|
||||
use parallelization
|
||||
use DAMASK_interface
|
||||
use IO
|
||||
use HDF5_utilities
|
||||
use math
|
||||
use spectral_utilities
|
||||
|
|
@ -140,9 +141,9 @@ subroutine grid_mech_spectral_basic_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set default and user defined options for PETSc
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type ngmres',ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type ngmres',ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -13,6 +13,7 @@ module grid_mech_spectral_polarisation
|
|||
use prec
|
||||
use parallelization
|
||||
use DAMASK_interface
|
||||
use IO
|
||||
use HDF5_utilities
|
||||
use math
|
||||
use spectral_utilities
|
||||
|
|
@ -158,9 +159,9 @@ subroutine grid_mech_spectral_polarisation_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set default and user defined options for PETSc
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type ngmres',ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,'-mech_snes_type ngmres',ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -89,9 +89,9 @@ subroutine grid_thermal_spectral_init
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set default and user defined options for PETSc
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,'-thermal_snes_type ngmres',ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,'-thermal_snes_type ngmres',ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -214,11 +214,11 @@ subroutine spectral_utilities_init
|
|||
|
||||
num_grid => config_numerics%get('grid',defaultVal=emptyDict)
|
||||
|
||||
call PETScOptionsClear(PETSC_NULL_OPTIONS,ierr)
|
||||
call PetscOptionsClear(PETSC_NULL_OPTIONS,ierr)
|
||||
CHKERRQ(ierr)
|
||||
if(debugPETSc) call PETScOptionsInsertString(PETSC_NULL_OPTIONS,trim(PETSCDEBUG),ierr)
|
||||
if(debugPETSc) call PetscOptionsInsertString(PETSC_NULL_OPTIONS,trim(PETSCDEBUG),ierr)
|
||||
CHKERRQ(ierr)
|
||||
call PETScOptionsInsertString(PETSC_NULL_OPTIONS,&
|
||||
call PetscOptionsInsertString(PETSC_NULL_OPTIONS,&
|
||||
num_grid%get_asString('petsc_options',defaultVal=''),ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
|
|
@ -313,12 +313,12 @@ subroutine spectral_utilities_init
|
|||
tensorSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK, &! no. of transforms, default iblock and oblock
|
||||
tensorField_real, tensorField_fourier, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! use all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planTensorForth)) call IO_error(810, ext_msg='planTensorForth')
|
||||
if (.not. C_ASSOCIATED(planTensorForth)) error stop 'FFTW error'
|
||||
planTensorBack = fftw_mpi_plan_many_dft_c2r(3, [gridFFTW(3),gridFFTW(2),gridFFTW(1)], & ! dimension, logical length in each dimension in reversed order
|
||||
tensorSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK, &! no. of transforms, default iblock and oblock
|
||||
tensorField_fourier,tensorField_real, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planTensorBack)) call IO_error(810, ext_msg='planTensorBack')
|
||||
if (.not. C_ASSOCIATED(planTensorBack)) error stop 'FFTW error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! vector MPI fftw plans
|
||||
|
|
@ -326,12 +326,12 @@ subroutine spectral_utilities_init
|
|||
vecSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK,&! no. of transforms, default iblock and oblock
|
||||
vectorField_real, vectorField_fourier, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! use all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planVectorForth)) call IO_error(810, ext_msg='planVectorForth')
|
||||
if (.not. C_ASSOCIATED(planVectorForth)) error stop 'FFTW error'
|
||||
planVectorBack = fftw_mpi_plan_many_dft_c2r(3, [gridFFTW(3),gridFFTW(2),gridFFTW(1)], & ! dimension, logical length in each dimension in reversed order
|
||||
vecSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK, & ! no. of transforms, default iblock and oblock
|
||||
vectorField_fourier,vectorField_real, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planVectorBack)) call IO_error(810, ext_msg='planVectorBack')
|
||||
if (.not. C_ASSOCIATED(planVectorBack)) error stop 'FFTW error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! scalar MPI fftw plans
|
||||
|
|
@ -339,12 +339,12 @@ subroutine spectral_utilities_init
|
|||
scalarSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK, &! no. of transforms, default iblock and oblock
|
||||
scalarField_real, scalarField_fourier, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! use all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planScalarForth)) call IO_error(810, ext_msg='planScalarForth')
|
||||
if (.not. C_ASSOCIATED(planScalarForth)) error stop 'FFTW error'
|
||||
planScalarBack = fftw_mpi_plan_many_dft_c2r(3, [gridFFTW(3),gridFFTW(2),gridFFTW(1)], & ! dimension, logical length in each dimension in reversed order, no. of transforms
|
||||
scalarSize, FFTW_MPI_DEFAULT_BLOCK, FFTW_MPI_DEFAULT_BLOCK, &! no. of transforms, default iblock and oblock
|
||||
scalarField_fourier,scalarField_real, & ! input data, output data
|
||||
PETSC_COMM_WORLD, FFTW_planner_flag) ! use all processors, planer precision
|
||||
if (.not. C_ASSOCIATED(planScalarBack)) call IO_error(810, ext_msg='planScalarBack')
|
||||
if (.not. C_ASSOCIATED(planScalarBack)) error stop 'FFTW error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! calculation of discrete angular frequencies, ordered as in FFTW (wrap around)
|
||||
|
|
@ -603,10 +603,9 @@ real(pReal) function utilities_divergenceRMS()
|
|||
enddo; enddo
|
||||
if(grid(1) == 1) utilities_divergenceRMS = utilities_divergenceRMS * 0.5_pReal ! counted twice in case of grid(1) == 1
|
||||
call MPI_Allreduce(MPI_IN_PLACE,utilities_divergenceRMS,1,MPI_DOUBLE,MPI_SUM,PETSC_COMM_WORLD,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='utilities_divergenceRMS')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
utilities_divergenceRMS = sqrt(utilities_divergenceRMS) * wgt ! RMS in real space calculated with Parsevals theorem from Fourier space
|
||||
|
||||
|
||||
end function utilities_divergenceRMS
|
||||
|
||||
|
||||
|
|
@ -664,7 +663,7 @@ real(pReal) function utilities_curlRMS()
|
|||
enddo; enddo
|
||||
|
||||
call MPI_Allreduce(MPI_IN_PLACE,utilities_curlRMS,1,MPI_DOUBLE,MPI_SUM,PETSC_COMM_WORLD,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='utilities_curlRMS')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
utilities_curlRMS = sqrt(utilities_curlRMS) * wgt
|
||||
if(grid(1) == 1) utilities_curlRMS = utilities_curlRMS * 0.5_pReal ! counted twice in case of grid(1) == 1
|
||||
|
||||
|
|
@ -713,7 +712,6 @@ function utilities_maskedCompliance(rot_BC,mask_stress,C)
|
|||
allocate(s_reduced,mold = c_reduced)
|
||||
call math_invert(s_reduced, errmatinv, c_reduced) ! invert reduced stiffness
|
||||
if (any(IEEE_is_NaN(s_reduced))) errmatinv = .true.
|
||||
if (errmatinv) call IO_error(error_ID=400,ext_msg='utilities_maskedCompliance')
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! check if inversion was successful
|
||||
|
|
@ -725,7 +723,7 @@ function utilities_maskedCompliance(rot_BC,mask_stress,C)
|
|||
write(IO_STDOUT,trim(formatString),advance='no') ' C * S (load) ', &
|
||||
transpose(matmul(c_reduced,s_reduced))
|
||||
write(IO_STDOUT,trim(formatString),advance='no') ' S (load) ', transpose(s_reduced)
|
||||
if(errmatinv) call IO_error(error_ID=400,ext_msg='utilities_maskedCompliance')
|
||||
if(errmatinv) error stop 'matrix inversion error'
|
||||
endif
|
||||
temp99_real = reshape(unpack(reshape(s_reduced,[size_reduced**2]),reshape(mask,[81]),0.0_pReal),[9,9])
|
||||
else
|
||||
|
|
@ -857,20 +855,21 @@ subroutine utilities_constitutiveResponse(P,P_av,C_volAvg,C_minmaxAvg,&
|
|||
|
||||
valueAndRank = [dPdF_norm_max,real(worldrank,pReal)]
|
||||
call MPI_Allreduce(MPI_IN_PLACE,valueAndRank,1, MPI_2DOUBLE_PRECISION, MPI_MAXLOC, PETSC_COMM_WORLD, ierr)
|
||||
if (ierr /= 0) call IO_error(894, ext_msg='MPI_Allreduce max')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
call MPI_Bcast(dPdF_max,81,MPI_DOUBLE,int(valueAndRank(2)),PETSC_COMM_WORLD, ierr)
|
||||
if (ierr /= 0) call IO_error(894, ext_msg='MPI_Bcast max')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
|
||||
valueAndRank = [dPdF_norm_min,real(worldrank,pReal)]
|
||||
call MPI_Allreduce(MPI_IN_PLACE,valueAndRank,1, MPI_2DOUBLE_PRECISION, MPI_MINLOC, PETSC_COMM_WORLD, ierr)
|
||||
if (ierr /= 0) call IO_error(894, ext_msg='MPI_Allreduce min')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
call MPI_Bcast(dPdF_min,81,MPI_DOUBLE,int(valueAndRank(2)),PETSC_COMM_WORLD, ierr)
|
||||
if (ierr /= 0) call IO_error(894, ext_msg='MPI_Bcast min')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
|
||||
C_minmaxAvg = 0.5_pReal*(dPdF_max + dPdF_min)
|
||||
|
||||
C_volAvg = sum(sum(homogenization_dPdF,dim=6),dim=5)
|
||||
call MPI_Allreduce(MPI_IN_PLACE,C_volAvg,81,MPI_DOUBLE,MPI_SUM,PETSC_COMM_WORLD,ierr)
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
C_volAvg = C_volAvg * wgt
|
||||
|
||||
|
||||
|
|
@ -1035,7 +1034,7 @@ subroutine utilities_updateCoords(F)
|
|||
! average F
|
||||
if (grid3Offset == 0) Favg = real(tensorField_fourier(1:3,1:3,1,1,1),pReal)*wgt
|
||||
call MPI_Bcast(Favg,9,MPI_DOUBLE,0,PETSC_COMM_WORLD,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Bcast')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! pad cell center fluctuations along z-direction (needed when running MPI simulation)
|
||||
|
|
@ -1046,19 +1045,19 @@ subroutine utilities_updateCoords(F)
|
|||
|
||||
! send bottom layer to process below
|
||||
call MPI_Isend(IPfluct_padded(:,:,:,2), c,MPI_DOUBLE,rank_b,0,PETSC_COMM_WORLD,r,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Isend')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
call MPI_Irecv(IPfluct_padded(:,:,:,grid3+2),c,MPI_DOUBLE,rank_t,0,PETSC_COMM_WORLD,r,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Irecv')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
call MPI_Wait(r,s,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Wait')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
|
||||
! send top layer to process above
|
||||
call MPI_Isend(IPfluct_padded(:,:,:,grid3+1),c,MPI_DOUBLE,rank_t,0,PETSC_COMM_WORLD,r,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Isend')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
call MPI_Irecv(IPfluct_padded(:,:,:,1), c,MPI_DOUBLE,rank_b,0,PETSC_COMM_WORLD,r,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Irecv')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
call MPI_Wait(r,s,ierr)
|
||||
if(ierr /=0) call IO_error(894, ext_msg='update_IPcoords/MPI_Wait')
|
||||
if(ierr /=0) error stop 'MPI error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! calculate nodal displacements
|
||||
|
|
|
|||
|
|
@ -588,9 +588,6 @@ function lattice_characteristicShear_Twin(Ntwin,structure,CoverA) result(charact
|
|||
4 &
|
||||
],[HEX_NTWIN]) ! indicator to formulas below
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_characteristicShear_Twin: '//trim(structure))
|
||||
|
||||
a = 0
|
||||
myFamilies: do f = 1,size(Ntwin,1)
|
||||
mySystems: do s = 1,Ntwin(f)
|
||||
|
|
@ -636,9 +633,6 @@ function lattice_C66_twin(Ntwin,C66,structure,CoverA)
|
|||
type(rotation) :: R
|
||||
integer :: i
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_C66_twin: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
coordinateSystem = buildCoordinateSystem(Ntwin,FCC_NSLIPSYSTEM,FCC_SYSTEMTWIN,&
|
||||
|
|
@ -966,9 +960,6 @@ function lattice_interaction_SlipBySlip(Nslip,interactionValues,structure) resul
|
|||
],shape(BCT_INTERACTIONSLIPSLIP))
|
||||
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_SlipBySlip: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
interactionTypes = FCC_INTERACTIONSLIPSLIP
|
||||
|
|
@ -1070,9 +1061,6 @@ function lattice_interaction_TwinByTwin(Ntwin,interactionValues,structure) resul
|
|||
20,20,20,20,20,20, 19,19,19,19,19,19, 18,18,18,18,18,18, 17,17,17,17,17,16 &
|
||||
],shape(HEX_INTERACTIONTWINTWIN)) !< Twin-twin interaction types for hex
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_TwinByTwin: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
interactionTypes = FCC_INTERACTIONTWINTWIN
|
||||
|
|
@ -1122,9 +1110,6 @@ function lattice_interaction_TransByTrans(Ntrans,interactionValues,structure) re
|
|||
2,2,2,2,2,2,2,2,2,1,1,1 &
|
||||
],shape(FCC_INTERACTIONTRANSTRANS)) !< Trans-trans interaction types for fcc
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_TransByTrans: '//trim(structure))
|
||||
|
||||
if(structure == 'fcc') then
|
||||
interactionTypes = FCC_INTERACTIONTRANSTRANS
|
||||
NtransMax = FCC_NTRANSSYSTEM
|
||||
|
|
@ -1252,9 +1237,6 @@ function lattice_interaction_SlipByTwin(Nslip,Ntwin,interactionValues,structure)
|
|||
!
|
||||
],shape(HEX_INTERACTIONSLIPTWIN)) !< Slip-twin interaction types for hex
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_SlipByTwin: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
interactionTypes = FCC_INTERACTIONSLIPTWIN
|
||||
|
|
@ -1316,9 +1298,6 @@ function lattice_interaction_SlipByTrans(Nslip,Ntrans,interactionValues,structur
|
|||
4,4,4,4,4,4,4,4,4,4,4,4 &
|
||||
],shape(FCC_INTERACTIONSLIPTRANS)) !< Slip-trans interaction types for fcc
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_SlipByTrans: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
interactionTypes = FCC_INTERACTIONSLIPTRANS
|
||||
|
|
@ -1386,9 +1365,6 @@ function lattice_interaction_TwinBySlip(Ntwin,Nslip,interactionValues,structure)
|
|||
4, 4, 4, 8, 8, 8, 12,12,12, 16,16,16,16,16,16, 20,20,20,20,20,20,20,20,20,20,20,20, 24,24,24,24,24,24 &
|
||||
],shape(HEX_INTERACTIONTWINSLIP)) !< Twin-slip interaction types for hex
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_interaction_TwinBySlip: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
interactionTypes = FCC_INTERACTIONTWINSLIP
|
||||
|
|
@ -1427,9 +1403,6 @@ function lattice_SchmidMatrix_slip(Nslip,structure,cOverA) result(SchmidMatrix)
|
|||
integer, dimension(:), allocatable :: NslipMax
|
||||
integer :: i
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_SchmidMatrix_slip: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
NslipMax = FCC_NSLIPSYSTEM
|
||||
|
|
@ -1480,9 +1453,6 @@ function lattice_SchmidMatrix_twin(Ntwin,structure,cOverA) result(SchmidMatrix)
|
|||
integer, dimension(:), allocatable :: NtwinMax
|
||||
integer :: i
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_SchmidMatrix_twin: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
NtwinMax = FCC_NTWINSYSTEM
|
||||
|
|
@ -1560,9 +1530,6 @@ function lattice_SchmidMatrix_cleavage(Ncleavage,structure,cOverA) result(Schmid
|
|||
integer, dimension(:), allocatable :: NcleavageMax
|
||||
integer :: i
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_SchmidMatrix_cleavage: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('ort')
|
||||
NcleavageMax = ORT_NCLEAVAGESYSTEM
|
||||
|
|
@ -1662,9 +1629,6 @@ function lattice_labels_slip(Nslip,structure) result(labels)
|
|||
real(pReal), dimension(:,:), allocatable :: slipSystems
|
||||
integer, dimension(:), allocatable :: NslipMax
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_labels_slip: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
NslipMax = FCC_NSLIPSYSTEM
|
||||
|
|
@ -1706,9 +1670,6 @@ function lattice_applyLatticeSymmetry33(T,structure) result(T_sym)
|
|||
|
||||
T_sym = 0.0_pReal
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_applyLatticeSymmetry33: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('iso','fcc','bcc')
|
||||
do k=1,3
|
||||
|
|
@ -1744,9 +1705,6 @@ function applyLatticeSymmetryC66(C66,structure) result(C66_sym)
|
|||
|
||||
C66_sym = 0.0_pReal
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='applyLatticeSymmetryC66: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case ('iso')
|
||||
do k=1,3
|
||||
|
|
@ -1824,9 +1782,6 @@ function lattice_labels_twin(Ntwin,structure) result(labels)
|
|||
real(pReal), dimension(:,:), allocatable :: twinSystems
|
||||
integer, dimension(:), allocatable :: NtwinMax
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='lattice_labels_twin: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
NtwinMax = FCC_NTWINSYSTEM
|
||||
|
|
@ -1913,9 +1868,6 @@ function coordinateSystem_slip(Nslip,structure,cOverA) result(coordinateSystem)
|
|||
real(pReal), dimension(:,:), allocatable :: slipSystems
|
||||
integer, dimension(:), allocatable :: NslipMax
|
||||
|
||||
if (len_trim(structure) /= 3) &
|
||||
call IO_error(137,ext_msg='coordinateSystem_slip: '//trim(structure))
|
||||
|
||||
select case(structure)
|
||||
case('fcc')
|
||||
NslipMax = FCC_NSLIPSYSTEM
|
||||
|
|
@ -2257,11 +2209,11 @@ function equivalent_nu(C,assumption) result(nu)
|
|||
/ 9.0_pReal
|
||||
elseif(IO_lc(assumption) == 'reuss') then
|
||||
call math_invert(S,error,C)
|
||||
if(error) call IO_error(0)
|
||||
if(error) error stop 'matrix inversion failed'
|
||||
K = 1.0_pReal &
|
||||
/ (S(1,1)+S(2,2)+S(3,3) +2.0_pReal*(S(1,2)+S(2,3)+S(1,3)))
|
||||
else
|
||||
call IO_error(0)
|
||||
error stop 'invalid assumption'
|
||||
K = 0.0_pReal
|
||||
endif
|
||||
|
||||
|
|
@ -2289,11 +2241,11 @@ function equivalent_mu(C,assumption) result(mu)
|
|||
/ 15.0_pReal
|
||||
elseif(IO_lc(assumption) == 'reuss') then
|
||||
call math_invert(S,error,C)
|
||||
if(error) call IO_error(0)
|
||||
if(error) error stop 'matrix inversion failed'
|
||||
mu = 15.0_pReal &
|
||||
/ (4.0_pReal*(S(1,1)+S(2,2)+S(3,3)) -4.0_pReal*(S(1,2)+S(2,3)+S(1,3)) +3.0_pReal*(S(4,4)+S(5,5)+S(6,6)))
|
||||
else
|
||||
call IO_error(0)
|
||||
error stop 'invalid assumption'
|
||||
mu = 0.0_pReal
|
||||
endif
|
||||
|
||||
|
|
|
|||
|
|
@ -499,7 +499,7 @@ function math_invSym3333(A)
|
|||
call dgetrf(6,6,temp66,6,ipiv6,ierr_i)
|
||||
call dgetri(6,temp66,6,ipiv6,work,size(work,1),ierr_f)
|
||||
if (ierr_i /= 0 .or. ierr_f /= 0) then
|
||||
call IO_error(400, ext_msg = 'math_invSym3333')
|
||||
error stop 'matrix inversion error'
|
||||
else
|
||||
math_invSym3333 = math_66toSym3333(temp66)
|
||||
endif
|
||||
|
|
@ -1200,8 +1200,8 @@ subroutine selfTest
|
|||
|
||||
if(any(dNeq(math_exp33(math_I3,0),math_I3))) &
|
||||
error stop 'math_exp33(math_I3,1)'
|
||||
if(any(dNeq(math_exp33(math_I3,256),exp(1.0_pReal)*math_I3))) &
|
||||
error stop 'math_exp33(math_I3,256)'
|
||||
if(any(dNeq(math_exp33(math_I3,128),exp(1.0_pReal)*math_I3))) &
|
||||
error stop 'math_exp33(math_I3,128)'
|
||||
|
||||
call random_number(v9)
|
||||
if(any(dNeq(math_33to9(math_9to33(v9)),v9))) &
|
||||
|
|
|
|||
|
|
@ -50,10 +50,17 @@ subroutine parallelization_init
|
|||
if (threadLevel<MPI_THREAD_FUNNELED) error stop 'MPI library does not support OpenMP'
|
||||
#endif
|
||||
|
||||
call PETScInitializeNoArguments(petsc_err) ! first line in the code according to PETSc manual
|
||||
call PetscInitializeNoArguments(petsc_err) ! first line in the code according to PETSc manual
|
||||
CHKERRQ(petsc_err)
|
||||
|
||||
call MPI_Comm_rank(PETSC_COMM_WORLD,worldrank,err)
|
||||
#if defined(DEBUG) && defined(__INTEL_COMPILER)
|
||||
call PetscSetFPTrap(PETSC_FP_TRAP_ON,petsc_err)
|
||||
#else
|
||||
call PetscSetFPTrap(PETSC_FP_TRAP_OFF,petsc_err)
|
||||
#endif
|
||||
CHKERRQ(petsc_err)
|
||||
|
||||
call MPI_Comm_rank(PETSC_COMM_WORLD,worldrank,err)
|
||||
if (err /= 0) error stop 'Could not determine worldrank'
|
||||
|
||||
if (worldrank == 0) print'(/,a)', ' <<<+- parallelization init -+>>>'
|
||||
|
|
|
|||
|
|
@ -23,7 +23,7 @@ subroutine quit(stop_id)
|
|||
call h5close_f(error)
|
||||
if (error /= 0) write(6,'(a,i5)') ' Error in h5close_f ',error
|
||||
|
||||
call PETScFinalize(ierr)
|
||||
call PetscFinalize(ierr)
|
||||
CHKERRQ(ierr)
|
||||
|
||||
#ifdef _OPENMP
|
||||
|
|
|
|||
456
src/results.f90
456
src/results.f90
|
|
@ -7,6 +7,7 @@
|
|||
module results
|
||||
use DAMASK_interface
|
||||
use parallelization
|
||||
use IO
|
||||
use rotations
|
||||
use HDF5_utilities
|
||||
#ifdef PETSc
|
||||
|
|
@ -535,33 +536,46 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
|
||||
integer(SIZE_T) :: type_size_string, type_size_int
|
||||
integer :: ierr, i
|
||||
integer :: hdferr, ierr, i
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! compound type: name of phase section + position/index within results array
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
|
||||
call h5tget_size_f(dt_id, type_size_string, ierr)
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tget_size_f(dt_id, type_size_string, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create memory types for each component of the compound type
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tclose_f(dt_id, ierr)
|
||||
call h5tclose_f(dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! prepare MPI communication (transparent for non-MPI runs)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
memberOffset = 0
|
||||
do i=1, size(label)
|
||||
memberOffset(i,worldrank) = count(phaseAt == i)*size(memberAtLocal,2) ! number of points/instance of this process
|
||||
|
|
@ -572,14 +586,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! MPI settings and communication
|
||||
#ifdef PETSc
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5pset_dxpl_mpio_f')
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/writeSize')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/memberOffset')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
#endif
|
||||
|
||||
myShape = int([size(phaseAt,1),writeSize(worldrank)], HSIZE_T)
|
||||
|
|
@ -588,14 +602,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||||
call h5screate_simple_f(2,myShape,memspace_id,ierr,myShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/memspace_id')
|
||||
call h5screate_simple_f(2,myShape,memspace_id,hdferr,myShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5screate_simple_f(2,totalShape,filespace_id,ierr,totalShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/filespace_id')
|
||||
call h5screate_simple_f(2,totalShape,filespace_id,hdferr,totalShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5sselect_hyperslab_f')
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! expand phaseAt to consider IPs (is not stored per IP)
|
||||
|
|
@ -611,29 +625,36 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write the components of the compound type individually
|
||||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||||
call h5pset_preserve_f(plist_id, .TRUE., hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
loc_id = results_openGroup('/mapping')
|
||||
call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dcreate_f')
|
||||
call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(phaseAtMaterialpoint,.true.)),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/name_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/position_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! close all
|
||||
call HDF5_closeGroup(loc_id)
|
||||
call h5pclose_f(plist_id, ierr)
|
||||
call h5sclose_f(filespace_id, ierr)
|
||||
call h5sclose_f(memspace_id, ierr)
|
||||
call h5dclose_f(dset_id, ierr)
|
||||
call h5tclose_f(dtype_id, ierr)
|
||||
call h5tclose_f(name_id, ierr)
|
||||
call h5tclose_f(position_id, ierr)
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(position_id, hdferr)
|
||||
|
||||
! for backward compatibility
|
||||
call results_setLink('/mapping/phase','/mapping/cellResults/constituent')
|
||||
|
|
@ -673,51 +694,64 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
|
||||
integer(SIZE_T) :: type_size_string, type_size_int
|
||||
integer :: ierr, i
|
||||
integer :: hdferr, ierr, i
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! compound type: name of phase section + position/index within results array
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
|
||||
call h5tget_size_f(dt_id, type_size_string, ierr)
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tget_size_f(dt_id, type_size_string, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create memory types for each component of the compound type
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tclose_f(dt_id, ierr)
|
||||
call h5tclose_f(dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! prepare MPI communication (transparent for non-MPI runs)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
memberOffset = 0
|
||||
do i=1, size(label)
|
||||
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process
|
||||
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process
|
||||
enddo
|
||||
writeSize = 0
|
||||
writeSize(worldrank) = size(memberAtLocal) ! total number of points by this process
|
||||
writeSize(worldrank) = size(memberAtLocal) ! total number of points by this process
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! MPI settings and communication
|
||||
#ifdef PETSc
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5pset_dxpl_mpio_f')
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/writeSize')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/memberOffset')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
#endif
|
||||
|
||||
myShape = int([writeSize(worldrank)], HSIZE_T)
|
||||
|
|
@ -726,14 +760,14 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||||
call h5screate_simple_f(1,myShape,memspace_id,ierr,myShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/memspace_id')
|
||||
call h5screate_simple_f(1,myShape,memspace_id,hdferr,myShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5screate_simple_f(1,totalShape,filespace_id,ierr,totalShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/filespace_id')
|
||||
call h5screate_simple_f(1,totalShape,filespace_id,hdferr,totalShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5sselect_hyperslab_f')
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! expand phaseAt to consider IPs (is not stored per IP)
|
||||
|
|
@ -749,29 +783,36 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write the components of the compound type individually
|
||||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||||
call h5pset_preserve_f(plist_id, .TRUE., hdferr)
|
||||
|
||||
loc_id = results_openGroup('/mapping')
|
||||
call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dcreate_f')
|
||||
call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(homogenizationAtMaterialpoint,.true.)),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/name_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/position_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! close all
|
||||
call HDF5_closeGroup(loc_id)
|
||||
call h5pclose_f(plist_id, ierr)
|
||||
call h5sclose_f(filespace_id, ierr)
|
||||
call h5sclose_f(memspace_id, ierr)
|
||||
call h5dclose_f(dset_id, ierr)
|
||||
call h5tclose_f(dtype_id, ierr)
|
||||
call h5tclose_f(name_id, ierr)
|
||||
call h5tclose_f(position_id, ierr)
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
! for backward compatibility
|
||||
call results_setLink('/mapping/homogenization','/mapping/cellResults/materialpoint')
|
||||
|
|
@ -793,263 +834,4 @@ character(len=24) function now()
|
|||
|
||||
end function now
|
||||
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!subroutine HDF5_backwardMappingPhase(material_phase,phasememberat,phase_name,dataspace_size,mpiOffset,mpiOffset_phase)
|
||||
|
||||
! integer(pInt), intent(in), dimension(:,:,:) :: material_phase, phasememberat
|
||||
! character(len=*), intent(in), dimension(:) :: phase_name
|
||||
! integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_phase
|
||||
! integer(pInt), intent(in) :: mpiOffset
|
||||
|
||||
! integer(pInt) :: hdferr, NmatPoints, Nconstituents, i, j
|
||||
! integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||||
! integer(SIZE_T) :: type_size
|
||||
|
||||
! integer(pInt), dimension(:,:), allocatable :: arr
|
||||
|
||||
! integer(HSIZE_T), dimension(1) :: counter
|
||||
! integer(HSSIZE_T), dimension(1) :: fileOffset
|
||||
|
||||
! character(len=64) :: phaseID
|
||||
|
||||
! Nconstituents = size(phasememberat,1)
|
||||
! NmatPoints = count(material_phase /=0)/Nconstituents
|
||||
|
||||
! allocate(arr(2,NmatPoints*Nconstituents))
|
||||
|
||||
! do i=1, NmatPoints
|
||||
! do j=Nconstituents-1, 0, -1
|
||||
! arr(1,Nconstituents*i-j) = i-1
|
||||
! enddo
|
||||
! enddo
|
||||
! arr(2,:) = pack(material_phase,material_phase/=0)
|
||||
|
||||
! do i=1, size(phase_name)
|
||||
! write(phaseID, '(i0)') i
|
||||
! mapping_ID = results_openGroup('/current/constitutive/'//trim(phaseID)//'_'//phase_name(i))
|
||||
! NmatPoints = count(material_phase == i)
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! create dataspace
|
||||
! call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||||
! int([dataspace_size(i)],HSIZE_T))
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! compound type
|
||||
! call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||||
! call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||||
|
||||
! call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tinsert_f 0')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! create Dataset
|
||||
! call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Create memory types (one compound datatype for each member)
|
||||
! call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tcreate_f position_id')
|
||||
! call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tinsert_f position_id')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Define and select hyperslabs
|
||||
! counter = NmatPoints ! how big i am
|
||||
! fileOffset = mpiOffset_phase(i) ! where i start to write my data
|
||||
|
||||
! call h5screate_simple_f(1, counter, memspace, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5screate_simple_f')
|
||||
! call h5dget_space_f(dset_id, space_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dget_space_f')
|
||||
! call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sselect_hyperslab_f')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Create property list for collective dataset write
|
||||
!#ifdef PETSc
|
||||
! call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pcreate_f')
|
||||
! call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pset_dxpl_mpio_f')
|
||||
!#endif
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! write data by fields in the datatype. Fields order is not important.
|
||||
! call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset, int([dataspace_size(i)],HSIZE_T),&
|
||||
! hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dwrite_f instance_id')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! !close types, dataspaces
|
||||
! call h5tclose_f(dtype_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tclose_f dtype_id')
|
||||
! call h5tclose_f(position_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5tclose_f position_id')
|
||||
! call h5dclose_f(dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5dclose_f')
|
||||
! call h5sclose_f(space_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sclose_f space_id')
|
||||
! call h5sclose_f(memspace, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5sclose_f memspace')
|
||||
! call h5pclose_f(plist_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingPhase: h5pclose_f')
|
||||
! call HDF5_closeGroup(mapping_ID)
|
||||
|
||||
! enddo
|
||||
|
||||
!end subroutine HDF5_backwardMappingPhase
|
||||
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!!> @brief adds the backward mapping from spatial position and constituent ID to results
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!subroutine HDF5_backwardMappingHomog(material_homog,homogmemberat,homogenization_name,dataspace_size,mpiOffset,mpiOffset_homog)
|
||||
|
||||
! integer(pInt), intent(in), dimension(:,:) :: material_homog, homogmemberat
|
||||
! character(len=*), intent(in), dimension(:) :: homogenization_name
|
||||
! integer(pInt), intent(in), dimension(:) :: dataspace_size, mpiOffset_homog
|
||||
! integer(pInt), intent(in) :: mpiOffset
|
||||
|
||||
! integer(pInt) :: hdferr, NmatPoints, i
|
||||
! integer(HID_T) :: mapping_id, dtype_id, dset_id, space_id, position_id, plist_id, memspace
|
||||
! integer(SIZE_T) :: type_size
|
||||
|
||||
! integer(pInt), dimension(:,:), allocatable :: arr
|
||||
|
||||
! integer(HSIZE_T), dimension(1) :: counter
|
||||
! integer(HSSIZE_T), dimension(1) :: fileOffset
|
||||
|
||||
! character(len=64) :: homogID
|
||||
|
||||
! NmatPoints = count(material_homog /=0)
|
||||
! allocate(arr(2,NmatPoints))
|
||||
|
||||
! arr(1,:) = (/(i, i=0,NmatPoints-1)/)
|
||||
! arr(2,:) = pack(material_homog,material_homog/=0)
|
||||
|
||||
! do i=1, size(homogenization_name)
|
||||
! write(homogID, '(i0)') i
|
||||
! mapping_ID = results_openGroup('/current/homogenization/'//trim(homogID)//'_'//homogenization_name(i))
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! create dataspace
|
||||
! call h5screate_simple_f(1, int([dataspace_size(i)],HSIZE_T), space_id, hdferr, &
|
||||
! int([dataspace_size(i)],HSIZE_T))
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! compound type
|
||||
! call h5tget_size_f(H5T_STD_I32LE, type_size, hdferr)
|
||||
! call h5tcreate_f(H5T_COMPOUND_F, type_size, dtype_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='HDF5_writeBackwardMapping: h5tcreate_f dtype_id')
|
||||
|
||||
! call h5tinsert_f(dtype_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tinsert_f 0')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! create Dataset
|
||||
! call h5dcreate_f(mapping_id, 'mapGeometry', dtype_id, space_id, dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Create memory types (one compound datatype for each member)
|
||||
! call h5tcreate_f(H5T_COMPOUND_F, int(pInt,SIZE_T), position_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tcreate_f position_id')
|
||||
! call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_STD_I32LE, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tinsert_f position_id')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Define and select hyperslabs
|
||||
! counter = NmatPoints ! how big i am
|
||||
! fileOffset = mpiOffset_homog(i) ! where i start to write my data
|
||||
|
||||
! call h5screate_simple_f(1, counter, memspace, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5screate_simple_f')
|
||||
! call h5dget_space_f(dset_id, space_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dget_space_f')
|
||||
! call h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, fileOffset, counter, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sselect_hyperslab_f')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! Create property list for collective dataset write
|
||||
!#ifdef PETSc
|
||||
! call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pcreate_f')
|
||||
! call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pset_dxpl_mpio_f')
|
||||
!#endif
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! ! write data by fields in the datatype. Fields order is not important.
|
||||
! call h5dwrite_f(dset_id, position_id, pack(arr(1,:),arr(2,:)==i)+mpiOffset,int([dataspace_size(i)],HSIZE_T),&
|
||||
! hdferr, file_space_id = space_id, mem_space_id = memspace, xfer_prp = plist_id)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dwrite_f instance_id')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
! !close types, dataspaces
|
||||
! call h5tclose_f(dtype_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tclose_f dtype_id')
|
||||
! call h5tclose_f(position_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5tclose_f position_id')
|
||||
! call h5dclose_f(dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5dclose_f')
|
||||
! call h5sclose_f(space_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sclose_f space_id')
|
||||
! call h5sclose_f(memspace, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5sclose_f memspace')
|
||||
! call h5pclose_f(plist_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_backwardMappingHomog: h5pclose_f')
|
||||
! call HDF5_closeGroup(mapping_ID)
|
||||
|
||||
! enddo
|
||||
|
||||
!end subroutine HDF5_backwardMappingHomog
|
||||
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!!> @brief adds the unique cell to node mapping
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!subroutine HDF5_mappingCells(mapping)
|
||||
|
||||
! integer(pInt), intent(in), dimension(:) :: mapping
|
||||
|
||||
! integer :: hdferr, Nnodes
|
||||
! integer(HID_T) :: mapping_id, dset_id, space_id
|
||||
|
||||
! Nnodes=size(mapping)
|
||||
! mapping_ID = results_openGroup("mapping")
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!! create dataspace
|
||||
! call h5screate_simple_f(1, int([Nnodes],HSIZE_T), space_id, hdferr, &
|
||||
! int([Nnodes],HSIZE_T))
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells: h5screate_simple_f')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!! create Dataset
|
||||
! call h5dcreate_f(mapping_id, "Cell",H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells')
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||||
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||||
!!--------------------------------------------------------------------------------------------------
|
||||
!! write data by fields in the datatype. Fields order is not important.
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||||
! call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER, mapping, int([Nnodes],HSIZE_T), hdferr)
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! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingCells: h5dwrite_f instance_id')
|
||||
|
||||
!!--------------------------------------------------------------------------------------------------
|
||||
!!close types, dataspaces
|
||||
! call h5dclose_f(dset_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingConstitutive: h5dclose_f')
|
||||
! call h5sclose_f(space_id, hdferr)
|
||||
! if (hdferr < 0) call IO_error(1,ext_msg='IO_mappingConstitutive: h5sclose_f')
|
||||
! call HDF5_closeGroup(mapping_ID)
|
||||
|
||||
!end subroutine HDF5_mappingCells
|
||||
|
||||
end module results
|
||||
|
|
|
|||
|
|
@ -640,13 +640,13 @@ function om2ax(om) result(ax)
|
|||
ax(1:3) = [ 0.0_pReal, 0.0_pReal, 1.0_pReal ]
|
||||
else
|
||||
call dgeev('N','V',3,om_,3,Wr,Wi,devNull,3,VR,3,work,size(work,1),ierr)
|
||||
if (ierr /= 0) call IO_error(401,ext_msg='Error in om2ax: DGEEV return not zero')
|
||||
if (ierr /= 0) error stop 'LAPACK error'
|
||||
#if defined(__GFORTRAN__) && __GNUC__<9 || defined(__INTEL_COMPILER) && INTEL_COMPILER<1800 || defined(__PGI)
|
||||
i = maxloc(merge(1,0,cEq(cmplx(Wr,Wi,pReal),cmplx(1.0_pReal,0.0_pReal,pReal),tol=1.0e-14_pReal)),dim=1)
|
||||
#else
|
||||
i = findloc(cEq(cmplx(Wr,Wi,pReal),cmplx(1.0_pReal,0.0_pReal,pReal),tol=1.0e-14_pReal),.true.,dim=1) !find eigenvalue (1,0)
|
||||
#endif
|
||||
if (i == 0) call IO_error(401,ext_msg='Error in om2ax Real: eigenvalue not found')
|
||||
if (i == 0) error stop 'om2ax conversion failed'
|
||||
ax(1:3) = VR(1:3,i)
|
||||
where ( dNeq0([om(2,3)-om(3,2), om(3,1)-om(1,3), om(1,2)-om(2,1)])) &
|
||||
ax(1:3) = sign(ax(1:3),-P *[om(2,3)-om(3,2), om(3,1)-om(1,3), om(1,2)-om(2,1)])
|
||||
|
|
|
|||
Loading…
Reference in New Issue