Merge branch 'misc-improvements' into Marc-2019.1
This commit is contained in:
Martin Diehl
commit
190c9a1b0d
|
|
@ -9,8 +9,8 @@ source $ENV_ROOT/CONFIG
|
||||||
|
|
||||||
set path = ($DAMASK_ROOT/bin $path)
|
set path = ($DAMASK_ROOT/bin $path)
|
||||||
|
|
||||||
set SOLVER=`which DAMASK_spectral`
|
set SOLVER=`which DAMASK_grid`
|
||||||
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
|
if ( "x$DAMASK_NUM_THREADS" == "x" ) then
|
||||||
set DAMASK_NUM_THREADS=1
|
set DAMASK_NUM_THREADS=1
|
||||||
endif
|
endif
|
||||||
|
|
||||||
|
|
@ -30,7 +30,7 @@ if ( $?prompt ) then
|
||||||
echo
|
echo
|
||||||
echo Using environment with ...
|
echo Using environment with ...
|
||||||
echo "DAMASK $DAMASK_ROOT"
|
echo "DAMASK $DAMASK_ROOT"
|
||||||
echo "Grid Solver $SOLVER"
|
echo "Grid Solver $SOLVER"
|
||||||
if ( $?PETSC_DIR) then
|
if ( $?PETSC_DIR) then
|
||||||
echo "PETSc location $PETSC_DIR"
|
echo "PETSc location $PETSC_DIR"
|
||||||
endif
|
endif
|
||||||
|
|
|
||||||
|
|
@ -35,7 +35,7 @@ cd $DAMASK_ROOT >/dev/null; BRANCH=$(git branch 2>/dev/null| grep -E '^\* '); cd
|
||||||
|
|
||||||
PATH=${DAMASK_ROOT}/bin:$PATH
|
PATH=${DAMASK_ROOT}/bin:$PATH
|
||||||
|
|
||||||
SOLVER=$(type -p DAMASK_spectral || true 2>/dev/null)
|
SOLVER=$(type -p DAMASK_grid || true 2>/dev/null)
|
||||||
[ "x$SOLVER" == "x" ] && SOLVER=$(blink 'Not found!')
|
[ "x$SOLVER" == "x" ] && SOLVER=$(blink 'Not found!')
|
||||||
|
|
||||||
[ "x$DAMASK_NUM_THREADS" == "x" ] && DAMASK_NUM_THREADS=1
|
[ "x$DAMASK_NUM_THREADS" == "x" ] && DAMASK_NUM_THREADS=1
|
||||||
|
|
@ -56,7 +56,7 @@ if [ ! -z "$PS1" ]; then
|
||||||
echo
|
echo
|
||||||
echo Using environment with ...
|
echo Using environment with ...
|
||||||
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
||||||
echo "Grid Solver $SOLVER"
|
echo "Grid Solver $SOLVER"
|
||||||
if [ "x$PETSC_DIR" != "x" ]; then
|
if [ "x$PETSC_DIR" != "x" ]; then
|
||||||
echo -n "PETSc location "
|
echo -n "PETSc location "
|
||||||
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
||||||
|
|
|
||||||
|
|
@ -27,7 +27,7 @@ cd $DAMASK_ROOT >/dev/null; BRANCH=$(git branch 2>/dev/null| grep -E '^\* '); cd
|
||||||
|
|
||||||
PATH=${DAMASK_ROOT}/bin:$PATH
|
PATH=${DAMASK_ROOT}/bin:$PATH
|
||||||
|
|
||||||
SOLVER=$(which DAMASK_spectral || true 2>/dev/null)
|
SOLVER=$(which DAMASK_grid || true 2>/dev/null)
|
||||||
[[ "x$SOLVER" == "x" ]] && SOLVER=$(blink 'Not found!')
|
[[ "x$SOLVER" == "x" ]] && SOLVER=$(blink 'Not found!')
|
||||||
|
|
||||||
[[ "x$DAMASK_NUM_THREADS" == "x" ]] && DAMASK_NUM_THREADS=1
|
[[ "x$DAMASK_NUM_THREADS" == "x" ]] && DAMASK_NUM_THREADS=1
|
||||||
|
|
@ -48,7 +48,7 @@ if [ ! -z "$PS1" ]; then
|
||||||
echo
|
echo
|
||||||
echo "Using environment with ..."
|
echo "Using environment with ..."
|
||||||
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
echo "DAMASK $DAMASK_ROOT $BRANCH"
|
||||||
echo "Grid Solver $SOLVER"
|
echo "Grid Solver $SOLVER"
|
||||||
if [ "x$PETSC_DIR" != "x" ]; then
|
if [ "x$PETSC_DIR" != "x" ]; then
|
||||||
echo -n "PETSc location "
|
echo -n "PETSc location "
|
||||||
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
[ -d $PETSC_DIR ] && echo $PETSC_DIR || blink $PETSC_DIR
|
||||||
|
|
|
||||||
|
|
@ -1,2 +0,0 @@
|
||||||
itmin 4
|
|
||||||
itmax 40
|
|
||||||
|
|
@ -0,0 +1,3 @@
|
||||||
|
grid:
|
||||||
|
itmin: 4
|
||||||
|
itmax: 40
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -177,16 +177,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -203,7 +203,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -226,7 +226,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -246,7 +246,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -269,7 +269,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -333,7 +333,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -388,7 +388,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -498,7 +498,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -523,7 +523,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -543,7 +543,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -613,7 +613,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -624,7 +624,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -635,7 +635,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -651,7 +651,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -665,7 +665,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -676,7 +676,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -847,7 +847,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -898,7 +898,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -934,7 +934,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -943,7 +943,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -998,24 +998,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1030,7 +1030,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1059,7 +1059,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1093,14 +1093,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1108,7 +1108,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1222,11 +1222,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1291,7 +1291,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $nauto -gt 2
|
if test $nauto -gt 2
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for auto restart "
|
incorrect option for auto restart "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1299,7 +1299,7 @@ incorrect option for auto restart "
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1307,7 +1307,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1315,7 +1315,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1642,7 +1642,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1660,7 +1660,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1783,7 +1783,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1825,7 +1825,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1975,7 +1975,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2039,42 +2039,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2327,7 +2327,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2360,7 +2360,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2474,9 +2474,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2560,7 +2560,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2569,7 +2569,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2729,7 +2729,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2753,23 +2753,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2809,7 +2809,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2859,7 +2859,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2870,7 +2870,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2975,7 +2975,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3267,6 +3267,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3309,7 +3310,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3318,10 +3319,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3389,15 +3390,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3579,7 +3580,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3599,6 +3600,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3647,7 +3649,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3696,7 +3698,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3913,7 +3915,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3933,6 +3935,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3972,7 +3975,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4055,7 +4058,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -49,4 +49,5 @@ echo "program: $program"
|
||||||
exit 1
|
exit 1
|
||||||
}
|
}
|
||||||
/bin/rm $userobj
|
/bin/rm $userobj
|
||||||
/bin/rm $DIRJOB/*.mod
|
/bin/rm $DIRJOB/*.mod
|
||||||
|
/bin/rm $DIRJOB/*.smod
|
||||||
|
|
|
||||||
|
|
@ -62,7 +62,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -176,16 +176,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -202,7 +202,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -612,7 +612,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -623,7 +623,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -634,7 +634,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -650,7 +650,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -664,7 +664,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -675,7 +675,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -777,7 +777,7 @@ do
|
||||||
;;
|
;;
|
||||||
-au* | -AU*)
|
-au* | -AU*)
|
||||||
nauto=$value
|
nauto=$value
|
||||||
echo
|
echo
|
||||||
echo warning: the option -au is no longer supported and will be ignored
|
echo warning: the option -au is no longer supported and will be ignored
|
||||||
echo
|
echo
|
||||||
;;
|
;;
|
||||||
|
|
@ -849,7 +849,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -900,7 +900,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -936,7 +936,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1032,7 +1032,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1110,7 +1110,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2017,42 +2017,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2305,7 +2305,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2338,7 +2338,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2452,9 +2452,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2538,7 +2538,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2547,7 +2547,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2707,7 +2707,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2837,7 +2837,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2848,7 +2848,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3241,6 +3241,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3283,7 +3284,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3292,10 +3293,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3363,15 +3364,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3553,7 +3554,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3621,7 +3623,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3670,7 +3672,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3887,7 +3889,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4029,7 +4032,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -62,7 +62,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -176,16 +176,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -202,7 +202,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -612,7 +612,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -623,7 +623,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -634,7 +634,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -650,7 +650,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -664,7 +664,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -675,7 +675,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -777,7 +777,7 @@ do
|
||||||
;;
|
;;
|
||||||
-au* | -AU*)
|
-au* | -AU*)
|
||||||
nauto=$value
|
nauto=$value
|
||||||
echo
|
echo
|
||||||
echo warning: the option -au is no longer supported and will be ignored
|
echo warning: the option -au is no longer supported and will be ignored
|
||||||
echo
|
echo
|
||||||
;;
|
;;
|
||||||
|
|
@ -849,7 +849,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -900,7 +900,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -936,7 +936,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1032,7 +1032,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1110,7 +1110,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2017,42 +2017,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2305,7 +2305,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2338,7 +2338,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2452,9 +2452,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2538,7 +2538,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2547,7 +2547,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2707,7 +2707,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2837,7 +2837,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2848,7 +2848,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3241,6 +3241,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3283,7 +3284,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3292,10 +3293,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3363,15 +3364,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3553,7 +3554,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3621,7 +3623,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3670,7 +3672,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3887,7 +3889,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4029,7 +4032,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -62,7 +62,7 @@
|
||||||
# =1, element storage out-of-core #
|
# =1, element storage out-of-core #
|
||||||
# -dll run marc using shared library libmarc.so and exe_marc #
|
# -dll run marc using shared library libmarc.so and exe_marc #
|
||||||
# =1, used #
|
# =1, used #
|
||||||
# =2, do not free streaming input memory #
|
# =2, do not free streaming input memory #
|
||||||
# =3, run with marc input deck #
|
# =3, run with marc input deck #
|
||||||
# -trk run marc for post-tracking #
|
# -trk run marc for post-tracking #
|
||||||
# -gpuid run marc using GPGPU capability #
|
# -gpuid run marc using GPGPU capability #
|
||||||
|
|
@ -176,16 +176,16 @@ fi
|
||||||
# MARC_MODE i8
|
# MARC_MODE i8
|
||||||
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
# it can also be set by the environmental variable MARC_INTEGER_SIZE
|
||||||
# and by the command line option "-mo"
|
# and by the command line option "-mo"
|
||||||
#
|
#
|
||||||
mode=
|
mode=
|
||||||
modeerror=
|
modeerror=
|
||||||
modeoption=
|
modeoption=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
fi
|
fi
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $2}}' $DIRSCRIPT/run_marc_defaults`
|
||||||
|
|
@ -202,7 +202,7 @@ fi
|
||||||
if test -f $HOME/run_marc_defaults; then
|
if test -f $HOME/run_marc_defaults; then
|
||||||
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
line=`$AWK '{if ($1 == "MARC_MODE") {print $1}}' $HOME/run_marc_defaults`
|
||||||
if test "$line" = "MARC_MODE"; then
|
if test "$line" = "MARC_MODE"; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option MARC_MODE is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
line=
|
line=
|
||||||
|
|
@ -225,7 +225,7 @@ if test -z "$mode" ; then
|
||||||
mode=i8
|
mode=i8
|
||||||
fi
|
fi
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
modeerror="bad value for MARC_INTEGER_SIZE variable; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo $modeerror
|
echo $modeerror
|
||||||
|
|
@ -245,7 +245,7 @@ for arg in $* ; do
|
||||||
if $setmode ; then
|
if $setmode ; then
|
||||||
mode=$arg
|
mode=$arg
|
||||||
case $mode in
|
case $mode in
|
||||||
i4)
|
i4)
|
||||||
modeerror="bad value for mode option; only i8 is supported."
|
modeerror="bad value for mode option; only i8 is supported."
|
||||||
modeoption=error
|
modeoption=error
|
||||||
echo
|
echo
|
||||||
|
|
@ -268,7 +268,7 @@ for arg in $* ; do
|
||||||
setmode=false
|
setmode=false
|
||||||
fi
|
fi
|
||||||
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
if [ ${arg}X = -moX -o ${arg}X = -MOX ] ; then
|
||||||
echo
|
echo
|
||||||
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
echo warning: the option -mo is deprecated, as of Marc 2015, only the integer*8 version is available
|
||||||
echo
|
echo
|
||||||
setmode=true
|
setmode=true
|
||||||
|
|
@ -332,7 +332,7 @@ case "`echo '\c'`" in
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
|
|
||||||
#
|
#
|
||||||
# Variables for the MARC environment
|
# Variables for the MARC environment
|
||||||
#
|
#
|
||||||
|
|
||||||
|
|
@ -387,7 +387,7 @@ LD_LIBRARYN32_PATH=$MARC_LIB:$LD_LIBRARYN32_PATH
|
||||||
export LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH
|
||||||
export LD_LIBRARY64_PATH
|
export LD_LIBRARY64_PATH
|
||||||
export LD_LIBRARYN32_PATH
|
export LD_LIBRARYN32_PATH
|
||||||
|
|
||||||
atexit() {
|
atexit() {
|
||||||
kill -15 $$
|
kill -15 $$
|
||||||
#
|
#
|
||||||
|
|
@ -497,7 +497,7 @@ MDSRCLIB=$MARC_LIB/mdsrc.a
|
||||||
# or in the user's home directory
|
# or in the user's home directory
|
||||||
# format:
|
# format:
|
||||||
# MARC_MPI <mpiversion>
|
# MARC_MPI <mpiversion>
|
||||||
#
|
#
|
||||||
value=
|
value=
|
||||||
file=
|
file=
|
||||||
if test -f $DIRSCRIPT/run_marc_defaults; then
|
if test -f $DIRSCRIPT/run_marc_defaults; then
|
||||||
|
|
@ -522,7 +522,7 @@ if test -n "$value"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
|
|
@ -542,7 +542,7 @@ if test -n "$value"; then
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
#
|
#
|
||||||
# allow scratch directory to be specified with environmental variable
|
# allow scratch directory to be specified with environmental variable
|
||||||
# MARCSCRATCH
|
# MARCSCRATCH
|
||||||
|
|
@ -612,7 +612,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-r* | -R*)
|
-r* | -R*)
|
||||||
rid=`$BASENAME $value .t08`
|
rid=`$BASENAME $value .t08`
|
||||||
|
|
@ -623,7 +623,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRRID=`pwd`/$DIRRID
|
DIRRID=`pwd`/$DIRRID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-si* | -SI*)
|
-si* | -SI*)
|
||||||
sid=$value
|
sid=$value
|
||||||
|
|
@ -634,7 +634,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSID=`pwd`/$DIRSID
|
DIRSID=`pwd`/$DIRSID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-pi* | -PI*)
|
-pi* | -PI*)
|
||||||
if test -f $value.t19
|
if test -f $value.t19
|
||||||
|
|
@ -650,7 +650,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRPID=`pwd`/$DIRPID
|
DIRPID=`pwd`/$DIRPID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-bdf | -BDF)
|
-bdf | -BDF)
|
||||||
makebdf=1
|
makebdf=1
|
||||||
|
|
@ -664,7 +664,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRDID=`pwd`/$DIRDID
|
DIRDID=`pwd`/$DIRDID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-vf | -VF)
|
-vf | -VF)
|
||||||
vid=`$BASENAME $value .vfs`
|
vid=`$BASENAME $value .vfs`
|
||||||
|
|
@ -675,7 +675,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-u* | -U*)
|
-u* | -U*)
|
||||||
user=$value
|
user=$value
|
||||||
|
|
@ -777,7 +777,7 @@ do
|
||||||
;;
|
;;
|
||||||
-au* | -AU*)
|
-au* | -AU*)
|
||||||
nauto=$value
|
nauto=$value
|
||||||
echo
|
echo
|
||||||
echo warning: the option -au is no longer supported and will be ignored
|
echo warning: the option -au is no longer supported and will be ignored
|
||||||
echo
|
echo
|
||||||
;;
|
;;
|
||||||
|
|
@ -849,7 +849,7 @@ do
|
||||||
*)
|
*)
|
||||||
DIRSCR=`pwd`/$DIRSCR
|
DIRSCR=`pwd`/$DIRSCR
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
-ho* | -HO*)
|
-ho* | -HO*)
|
||||||
host=$value
|
host=$value
|
||||||
|
|
@ -900,7 +900,7 @@ fi
|
||||||
|
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -936,7 +936,7 @@ fi
|
||||||
ntprint=$nt
|
ntprint=$nt
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
# copy from -nprocd[s]
|
# copy from -nprocd[s]
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
nteprint=$nprocdddm
|
nteprint=$nprocdddm
|
||||||
fi
|
fi
|
||||||
|
|
@ -945,7 +945,7 @@ if test $nte -ne 0
|
||||||
then
|
then
|
||||||
nteprint=$nte
|
nteprint=$nte
|
||||||
fi
|
fi
|
||||||
# check for minimum 1 threads per processes for DDM
|
# check for minimum 1 threads per processes for DDM
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
if test $nteprint -lt $nprocdddm
|
if test $nteprint -lt $nprocdddm
|
||||||
|
|
@ -1000,24 +1000,24 @@ export OMP_STACKSIZE=7M
|
||||||
# deprecate -nthread option at arugment of marc
|
# deprecate -nthread option at arugment of marc
|
||||||
nt=0
|
nt=0
|
||||||
# Reset nprocdddmm, nsolver and threads if not given.
|
# Reset nprocdddmm, nsolver and threads if not given.
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdarg=
|
nprocdarg=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddmprint=
|
nprocdddmprint=
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -eq 0
|
if test $nprocdddm -eq 0
|
||||||
then
|
then
|
||||||
nprocdddm=
|
nprocdddm=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
nsolverprint=$nsolver
|
nsolverprint=$nsolver
|
||||||
if test $nsolver -eq 0
|
if test $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nsolverprint=
|
nsolverprint=
|
||||||
fi
|
fi
|
||||||
# end of threads setting.
|
# end of threads setting.
|
||||||
gpuoption=
|
gpuoption=
|
||||||
if test "$gpuids" = "" ; then
|
if test "$gpuids" = "" ; then
|
||||||
|
|
@ -1032,7 +1032,7 @@ else
|
||||||
MARCCUDALIBS=$MARCCUDALIBS2
|
MARCCUDALIBS=$MARCCUDALIBS2
|
||||||
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
export LD_LIBRARY_PATH=$CUDALIB2:$LD_LIBRARY_PATH
|
||||||
fi
|
fi
|
||||||
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
# Linux 64 + HPMPI, Below code is taken from include_linux64
|
||||||
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
if test $MPITYPE = hpmpi -a "$ARCHITECTURE" = "linux_amd64"
|
||||||
then
|
then
|
||||||
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
export MPIHPSPECIAL="$MPIHPSPECIAL -e LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
|
||||||
|
|
@ -1061,7 +1061,7 @@ if test "$dllrun" -gt 0; then
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test "$progdll"; then
|
if test "$progdll"; then
|
||||||
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
/bin/cp ${progdll}_$marcdll $DIRJOB/$marcdll
|
||||||
rmdll=yes
|
rmdll=yes
|
||||||
pathdll=yes
|
pathdll=yes
|
||||||
progdll=${progdll}_$marcdll
|
progdll=${progdll}_$marcdll
|
||||||
|
|
@ -1095,14 +1095,14 @@ while test forever; do
|
||||||
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
if test $nprocdddm -gt 1 -a $icreated -eq 0; then
|
||||||
if test ! -f $DIRJID/1$jid$dotdat; then
|
if test ! -f $DIRJID/1$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/1$jid$dotdat not accessible"
|
input file $DIRJID/1$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test ! -f $DIRJID/$jid$dotdat; then
|
if test ! -f $DIRJID/$jid$dotdat; then
|
||||||
if test "$jid" != "" ; then
|
if test "$jid" != "" ; then
|
||||||
error="$error
|
error="$error
|
||||||
input file $DIRJID/$jid$dotdat not accessible"
|
input file $DIRJID/$jid$dotdat not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1110,7 +1110,7 @@ fi
|
||||||
if test $nprocd -gt 1; then
|
if test $nprocd -gt 1; then
|
||||||
if test "$host" ; then
|
if test "$host" ; then
|
||||||
if test ! -f $host; then
|
if test ! -f $host; then
|
||||||
error="$error
|
error="$error
|
||||||
host name file $host not accessible"
|
host name file $host not accessible"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1224,11 +1224,11 @@ view factor file $DIRVID/$vid.vfs not accessible"
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
if test "$MARC_MPITYPE" = "$MPI_DEFAULT"; then
|
||||||
notok=false
|
notok=false
|
||||||
fi
|
fi
|
||||||
if $notok; then
|
if $notok; then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
incorrect option for -mpi option: $MARC_MPITYPE (valid: $MPI_OTHER)"
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1293,7 +1293,7 @@ defaults file $DIRDID/$did$dotdat not accessible"
|
||||||
then
|
then
|
||||||
if test $ndcoup -gt 3
|
if test $ndcoup -gt 3
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for contact decoupling "
|
incorrect option for contact decoupling "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1301,7 +1301,7 @@ incorrect option for contact decoupling "
|
||||||
then
|
then
|
||||||
if test $ndytran -gt 1
|
if test $ndytran -gt 1
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for Marc-Dytran Switch "
|
incorrect option for Marc-Dytran Switch "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1309,7 +1309,7 @@ incorrect option for Marc-Dytran Switch "
|
||||||
then
|
then
|
||||||
if test ! -x $MARC_BIN/$exefile
|
if test ! -x $MARC_BIN/$exefile
|
||||||
then
|
then
|
||||||
error="$error
|
error="$error
|
||||||
incorrect option for -mpi option: $MARC_MPITYPE "
|
incorrect option for -mpi option: $MARC_MPITYPE "
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
@ -1626,7 +1626,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRJID=`pwd`/$DIRJID
|
DIRJID=`pwd`/$DIRJID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
$ECHO "User subroutine name ($user)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -1644,7 +1644,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
user=`pwd`/$user
|
user=`pwd`/$user
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
usernoext=$user
|
usernoext=$user
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
|
||||||
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
|
||||||
|
|
@ -1767,7 +1767,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
*)
|
*)
|
||||||
DIRVID=`pwd`/$DIRVID
|
DIRVID=`pwd`/$DIRVID
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
;;
|
;;
|
||||||
esac
|
esac
|
||||||
fi
|
fi
|
||||||
|
|
@ -1809,7 +1809,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
fi
|
fi
|
||||||
if test $nsolver -gt 0
|
if test $nsolver -gt 0
|
||||||
then
|
then
|
||||||
if test $nsolver -gt $nprocd
|
if test $nsolver -gt $nprocd
|
||||||
then
|
then
|
||||||
nprocd=$nsolver
|
nprocd=$nsolver
|
||||||
fi
|
fi
|
||||||
|
|
@ -1959,7 +1959,7 @@ Program name ($prog)? $ECHOTXT"
|
||||||
then
|
then
|
||||||
qid=$value
|
qid=$value
|
||||||
fi
|
fi
|
||||||
case $qid in
|
case $qid in
|
||||||
s* | S* | l* | L* | v* | V* )
|
s* | S* | l* | L* | v* | V* )
|
||||||
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
$ECHO "Queue priority ($priority)? $ECHOTXT"
|
||||||
read value
|
read value
|
||||||
|
|
@ -2017,42 +2017,42 @@ esac
|
||||||
|
|
||||||
done
|
done
|
||||||
#
|
#
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntarg=
|
ntarg=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
ntprint=
|
ntprint=
|
||||||
fi
|
fi
|
||||||
if test $nt -eq 0
|
if test $nt -eq 0
|
||||||
then
|
then
|
||||||
nt=
|
nt=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
ntearg=
|
ntearg=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nteprint=
|
nteprint=
|
||||||
fi
|
fi
|
||||||
if test $nte -eq 0
|
if test $nte -eq 0
|
||||||
then
|
then
|
||||||
nte=
|
nte=
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsarg=
|
ntsarg=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
ntsprint=
|
ntsprint=
|
||||||
fi
|
fi
|
||||||
if test $nts -eq 0
|
if test $nts -eq 0
|
||||||
then
|
then
|
||||||
nts=
|
nts=
|
||||||
fi
|
fi
|
||||||
#
|
#
|
||||||
|
|
@ -2305,7 +2305,7 @@ fi
|
||||||
execpath=$usernoext.marc
|
execpath=$usernoext.marc
|
||||||
usersub=1
|
usersub=1
|
||||||
fi
|
fi
|
||||||
export execpath
|
export execpath
|
||||||
execname=`$BASENAME $execpath`
|
execname=`$BASENAME $execpath`
|
||||||
|
|
||||||
if test "$host"
|
if test "$host"
|
||||||
|
|
@ -2338,7 +2338,7 @@ fi
|
||||||
exit 1
|
exit 1
|
||||||
fi
|
fi
|
||||||
|
|
||||||
# check for Myrinet that the number of processes per host is
|
# check for Myrinet that the number of processes per host is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
# .gmpi directory must exist in user's home directory
|
# .gmpi directory must exist in user's home directory
|
||||||
# and must have write permission from remote hosts
|
# and must have write permission from remote hosts
|
||||||
|
|
@ -2452,9 +2452,9 @@ fi
|
||||||
then
|
then
|
||||||
# Intel MPI
|
# Intel MPI
|
||||||
if test -f $jid.mfile
|
if test -f $jid.mfile
|
||||||
then
|
then
|
||||||
/bin/rm $jid.mfile 2> /dev/null
|
/bin/rm $jid.mfile 2> /dev/null
|
||||||
fi
|
fi
|
||||||
/bin/cp $host $jid.host
|
/bin/cp $host $jid.host
|
||||||
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
grep -v '^#' $host | $AWK '{host=$1;num=$2;for (i=1;i<=num;i++) print host}' > $jid.mfile
|
||||||
# end Intel MPI for DMP
|
# end Intel MPI for DMP
|
||||||
|
|
@ -2538,7 +2538,7 @@ fi
|
||||||
else
|
else
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
host_filt=$host
|
host_filt=$host
|
||||||
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
if test $MACHINENAME = "LINUX" -a $MPITYPE = "intelmpi"
|
||||||
then
|
then
|
||||||
host_filt=$jid.mfile
|
host_filt=$jid.mfile
|
||||||
fi
|
fi
|
||||||
|
|
@ -2547,7 +2547,7 @@ fi
|
||||||
# or distributed and set the variable "dirstatus" accordingly.
|
# or distributed and set the variable "dirstatus" accordingly.
|
||||||
# only perform the check if user subroutine is used
|
# only perform the check if user subroutine is used
|
||||||
# or a user subroutine executable is used
|
# or a user subroutine executable is used
|
||||||
|
|
||||||
numfield=1
|
numfield=1
|
||||||
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
if test $MPITYPE = hpmpi -o $MACHINENAME = HP -a $MPITYPE = hardware
|
||||||
then
|
then
|
||||||
|
|
@ -2707,7 +2707,7 @@ fi
|
||||||
fi
|
fi
|
||||||
# modify new host file if NFS mounted heterogeneous machine
|
# modify new host file if NFS mounted heterogeneous machine
|
||||||
doit=
|
doit=
|
||||||
if test $program = $prog.marc
|
if test $program = $prog.marc
|
||||||
then
|
then
|
||||||
doit=yes
|
doit=yes
|
||||||
fi
|
fi
|
||||||
|
|
@ -2731,23 +2731,23 @@ if ($1 ~ hst) {if ( fnr == 1 ) printf("%s\n",$0); else \
|
||||||
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
/bin/mv $jid.host{$$} $jid.host
|
/bin/mv $jid.host{$$} $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
done
|
done
|
||||||
fi
|
fi
|
||||||
fi # if test $program = $prog.marc -o $user -o $obj
|
fi # if test $program = $prog.marc -o $user -o $obj
|
||||||
|
|
||||||
else # if test $host
|
else # if test $host
|
||||||
# assume shared memory machine if no hostfile given and
|
# assume shared memory machine if no hostfile given and
|
||||||
# MPITYPE is set to mpich or Myrinet
|
# MPITYPE is set to mpich or Myrinet
|
||||||
# check for Myrinet that the total number of processes is
|
# check for Myrinet that the total number of processes is
|
||||||
# less than number of available user ports, 5
|
# less than number of available user ports, 5
|
||||||
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
if test $MPITYPE = "mpich" -o $MPITYPE = "scali"
|
||||||
then
|
then
|
||||||
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
numproc=`echo $nprocd | $AWK '{sum=$1-1}; {print sum}'`
|
||||||
echo `hostname` $numproc $execpath > $jid.host
|
echo `hostname` $numproc $execpath > $jid.host
|
||||||
host=$jid.host
|
host=$jid.host
|
||||||
elif test $MPITYPE = "myrinet"
|
elif test $MPITYPE = "myrinet"
|
||||||
then
|
then
|
||||||
if test $nprocd -gt 5
|
if test $nprocd -gt 5
|
||||||
then
|
then
|
||||||
|
|
@ -2787,7 +2787,7 @@ printf("%s %s %s_%s\n",$1,$2,$3,$1) } else print}' $jid.host > $jid.host{$$}
|
||||||
fi # if test $host
|
fi # if test $host
|
||||||
|
|
||||||
fi # if test $nprocd -gt 1
|
fi # if test $nprocd -gt 1
|
||||||
|
|
||||||
fi # if test $program = $exefile -o $program = $prog.marc
|
fi # if test $program = $exefile -o $program = $prog.marc
|
||||||
|
|
||||||
##############################################################################
|
##############################################################################
|
||||||
|
|
@ -2837,7 +2837,7 @@ else
|
||||||
nsolverarg="$nsolverarg $nsolver"
|
nsolverarg="$nsolverarg $nsolver"
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
if test $nprocdddm -lt 2 -a $nsolver -eq 0
|
||||||
then
|
then
|
||||||
nprocd=0
|
nprocd=0
|
||||||
fi
|
fi
|
||||||
if test $nprocd -gt 0
|
if test $nprocd -gt 0
|
||||||
|
|
@ -2848,7 +2848,7 @@ then
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -2953,7 +2953,7 @@ $ntearg $nte $ntsarg $nts $gpuoption -dirjob $DIRJOB "
|
||||||
then
|
then
|
||||||
echo " "
|
echo " "
|
||||||
echo "error: parallel job attempted on non-parallel version,"
|
echo "error: parallel job attempted on non-parallel version,"
|
||||||
echo " or, if parallel version is installed, the include "
|
echo " or, if parallel version is installed, the include "
|
||||||
echo " file is probably corrupted"
|
echo " file is probably corrupted"
|
||||||
echo " "
|
echo " "
|
||||||
if test "$deletelog" = no
|
if test "$deletelog" = no
|
||||||
|
|
@ -3241,6 +3241,7 @@ else
|
||||||
fi
|
fi
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3283,7 +3284,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
fi
|
fi
|
||||||
else
|
else
|
||||||
if test $cpdll = yes; then
|
if test $cpdll = yes; then
|
||||||
|
|
@ -3292,10 +3293,10 @@ else
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes
|
if test $rmdll = yes
|
||||||
then
|
then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
then
|
then
|
||||||
numdom=$nprocdddm
|
numdom=$nprocdddm
|
||||||
|
|
@ -3363,15 +3364,15 @@ else
|
||||||
#
|
#
|
||||||
QUENAME=qsub
|
QUENAME=qsub
|
||||||
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
SUBMCMD="-q $qid -o /dev/null -e $jid.batch_err_log -x -r $jid"
|
||||||
if test "$priority"
|
if test "$priority"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -p $priority"
|
SUBMCMD=$SUBMCMD" -p $priority"
|
||||||
fi
|
fi
|
||||||
if test "$att"
|
if test "$att"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -a $att"
|
SUBMCMD=$SUBMCMD" -a $att"
|
||||||
fi
|
fi
|
||||||
if test "$cpu"
|
if test "$cpu"
|
||||||
then
|
then
|
||||||
SUBMCMD=$SUBMCMD" -lt $cpu"
|
SUBMCMD=$SUBMCMD" -lt $cpu"
|
||||||
fi
|
fi
|
||||||
|
|
@ -3553,7 +3554,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3573,6 +3574,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
|
|
||||||
#
|
#
|
||||||
# run marc
|
# run marc
|
||||||
|
|
@ -3621,7 +3623,7 @@ fi
|
||||||
if test $dllrun -eq 0; then
|
if test $dllrun -eq 0; then
|
||||||
if test $prgsav = no
|
if test $prgsav = no
|
||||||
then
|
then
|
||||||
/bin/rm -f $bd$program 2>/dev/null
|
/bin/rm -f $bd$program 2>/dev/null
|
||||||
# for network run, remove executable on remote machines
|
# for network run, remove executable on remote machines
|
||||||
# and executables with modified name
|
# and executables with modified name
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
|
|
@ -3670,7 +3672,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
if test $nprocdddm -gt 1
|
if test $nprocdddm -gt 1
|
||||||
|
|
@ -3887,7 +3889,7 @@ then
|
||||||
then
|
then
|
||||||
counter=$((counter+1))
|
counter=$((counter+1))
|
||||||
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
if test ${dirstatus[$counter]} = "local" -a ${compstatus[$counter]} = "yes"
|
||||||
then
|
then
|
||||||
DIR1=$DIRJOB
|
DIR1=$DIRJOB
|
||||||
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||||||
workdir=`echo $line | $AWK '{print $3}'`
|
workdir=`echo $line | $AWK '{print $3}'`
|
||||||
|
|
@ -3907,6 +3909,7 @@ else # if test $link
|
||||||
fi # if test $link
|
fi # if test $link
|
||||||
/bin/rm $userobj 2>/dev/null
|
/bin/rm $userobj 2>/dev/null
|
||||||
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||||||
|
/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||||||
# done if no job id given
|
# done if no job id given
|
||||||
if test -z "$jid"
|
if test -z "$jid"
|
||||||
then
|
then
|
||||||
|
|
@ -3946,7 +3949,7 @@ if test $ddm_arc -gt 0; then
|
||||||
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
RUN_JOB="$MESHERDIR/sf_exeddm $RUN_JOB -ddm $ddm_arc "
|
||||||
fi
|
fi
|
||||||
|
|
||||||
$RUN_JOB
|
$RUN_JOB
|
||||||
|
|
||||||
if test $nprocd -gt 1
|
if test $nprocd -gt 1
|
||||||
then
|
then
|
||||||
|
|
@ -4029,7 +4032,7 @@ else
|
||||||
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
if test $rmdll = yes;then
|
if test $rmdll = yes;then
|
||||||
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
/bin/rm -f $DIRJOB/$marcdll 2>/dev/null
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -5,9 +5,11 @@ import re as _re
|
||||||
name = 'damask'
|
name = 'damask'
|
||||||
with open(_Path(__file__).parent/_Path('VERSION')) as _f:
|
with open(_Path(__file__).parent/_Path('VERSION')) as _f:
|
||||||
version = _re.sub(r'^v','',_f.readline().strip())
|
version = _re.sub(r'^v','',_f.readline().strip())
|
||||||
|
__version__ = version
|
||||||
|
|
||||||
# make classes directly accessible as damask.Class
|
# make classes directly accessible as damask.Class
|
||||||
from ._environment import Environment # noqa
|
from ._environment import Environment as _ # noqa
|
||||||
|
environment = _()
|
||||||
from ._table import Table # noqa
|
from ._table import Table # noqa
|
||||||
from ._vtk import VTK # noqa
|
from ._vtk import VTK # noqa
|
||||||
from ._colormap import Colormap # noqa
|
from ._colormap import Colormap # noqa
|
||||||
|
|
@ -19,6 +21,7 @@ from ._geom import Geom # noqa
|
||||||
from . import solver # noqa
|
from . import solver # noqa
|
||||||
|
|
||||||
# deprecated
|
# deprecated
|
||||||
|
Environment = _
|
||||||
from ._asciitable import ASCIItable # noqa
|
from ._asciitable import ASCIItable # noqa
|
||||||
from ._test import Test # noqa
|
from ._test import Test # noqa
|
||||||
from .config import Material # noqa
|
from .config import Material # noqa
|
||||||
|
|
|
||||||
|
|
@ -1,8 +1,11 @@
|
||||||
|
import os
|
||||||
import json
|
import json
|
||||||
import functools
|
import functools
|
||||||
|
|
||||||
import numpy as np
|
import numpy as np
|
||||||
import matplotlib as mpl
|
import matplotlib as mpl
|
||||||
|
if os.name == 'posix' and 'DISPLAY' not in os.environ:
|
||||||
|
mpl.use('Agg')
|
||||||
import matplotlib.pyplot as plt
|
import matplotlib.pyplot as plt
|
||||||
from matplotlib import cm
|
from matplotlib import cm
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -6,9 +6,9 @@ from functools import partial
|
||||||
import numpy as np
|
import numpy as np
|
||||||
from scipy import ndimage,spatial
|
from scipy import ndimage,spatial
|
||||||
|
|
||||||
|
import damask
|
||||||
from . import VTK
|
from . import VTK
|
||||||
from . import util
|
from . import util
|
||||||
from . import Environment
|
|
||||||
from . import grid_filters
|
from . import grid_filters
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -362,7 +362,7 @@ class Geom:
|
||||||
seeds_p = seeds
|
seeds_p = seeds
|
||||||
coords = grid_filters.cell_coord0(grid,size).reshape(-1,3)
|
coords = grid_filters.cell_coord0(grid,size).reshape(-1,3)
|
||||||
|
|
||||||
pool = multiprocessing.Pool(processes = int(Environment().options['DAMASK_NUM_THREADS']))
|
pool = multiprocessing.Pool(processes = int(damask.environment.options['DAMASK_NUM_THREADS']))
|
||||||
result = pool.map_async(partial(Geom._find_closest_seed,seeds_p,weights_p), [coord for coord in coords])
|
result = pool.map_async(partial(Geom._find_closest_seed,seeds_p,weights_p), [coord for coord in coords])
|
||||||
pool.close()
|
pool.close()
|
||||||
pool.join()
|
pool.join()
|
||||||
|
|
|
||||||
|
|
@ -18,7 +18,6 @@ from . import VTK
|
||||||
from . import Table
|
from . import Table
|
||||||
from . import Rotation
|
from . import Rotation
|
||||||
from . import Orientation
|
from . import Orientation
|
||||||
from . import Environment
|
|
||||||
from . import grid_filters
|
from . import grid_filters
|
||||||
from . import mechanics
|
from . import mechanics
|
||||||
from . import util
|
from . import util
|
||||||
|
|
@ -1060,7 +1059,7 @@ class Result:
|
||||||
Arguments parsed to func.
|
Arguments parsed to func.
|
||||||
|
|
||||||
"""
|
"""
|
||||||
num_threads = Environment().options['DAMASK_NUM_THREADS']
|
num_threads = damask.environment.options['DAMASK_NUM_THREADS']
|
||||||
pool = mp.Pool(int(num_threads) if num_threads is not None else None)
|
pool = mp.Pool(int(num_threads) if num_threads is not None else None)
|
||||||
lock = mp.Manager().Lock()
|
lock = mp.Manager().Lock()
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -805,7 +805,7 @@ class Rotation:
|
||||||
"""Rotation matrix to Bunge-Euler angles."""
|
"""Rotation matrix to Bunge-Euler angles."""
|
||||||
with np.errstate(invalid='ignore',divide='ignore'):
|
with np.errstate(invalid='ignore',divide='ignore'):
|
||||||
zeta = 1.0/np.sqrt(1.0-om[...,2,2:3]**2)
|
zeta = 1.0/np.sqrt(1.0-om[...,2,2:3]**2)
|
||||||
eu = np.where(np.isclose(np.abs(om[...,2,2:3]),1.0,1e-9),
|
eu = np.where(np.isclose(np.abs(om[...,2,2:3]),1.0,0.0),
|
||||||
np.block([np.arctan2(om[...,0,1:2],om[...,0,0:1]),
|
np.block([np.arctan2(om[...,0,1:2],om[...,0,0:1]),
|
||||||
np.pi*0.5*(1-om[...,2,2:3]),
|
np.pi*0.5*(1-om[...,2,2:3]),
|
||||||
np.zeros(om.shape[:-2]+(1,)),
|
np.zeros(om.shape[:-2]+(1,)),
|
||||||
|
|
|
||||||
|
|
@ -180,7 +180,7 @@ class Test:
|
||||||
|
|
||||||
def fileInRoot(self,dir,file):
|
def fileInRoot(self,dir,file):
|
||||||
"""Path to a file in the root directory of DAMASK."""
|
"""Path to a file in the root directory of DAMASK."""
|
||||||
return os.path.join(damask.Environment().rootDir(),dir,file)
|
return str(damask.environment.root_dir/dir/file)
|
||||||
|
|
||||||
|
|
||||||
def fileInReference(self,file):
|
def fileInReference(self,file):
|
||||||
|
|
|
||||||
|
|
@ -9,7 +9,6 @@ from vtk.util.numpy_support import numpy_to_vtkIdTypeArray as np_to_vtkIdTypeArr
|
||||||
|
|
||||||
import damask
|
import damask
|
||||||
from . import Table
|
from . import Table
|
||||||
from . import Environment
|
|
||||||
|
|
||||||
|
|
||||||
class VTK:
|
class VTK:
|
||||||
|
|
@ -258,7 +257,7 @@ class VTK:
|
||||||
ren.AddActor(actor)
|
ren.AddActor(actor)
|
||||||
ren.SetBackground(0.2,0.2,0.2)
|
ren.SetBackground(0.2,0.2,0.2)
|
||||||
|
|
||||||
window.SetSize(Environment().screen_size[0],Environment().screen_size[1])
|
window.SetSize(damask.environment.screen_size[0],damask.environment.screen_size[1])
|
||||||
|
|
||||||
iren = vtk.vtkRenderWindowInteractor()
|
iren = vtk.vtkRenderWindowInteractor()
|
||||||
iren.SetRenderWindow(window)
|
iren.SetRenderWindow(window)
|
||||||
|
|
|
||||||
|
|
@ -3,12 +3,12 @@ import shlex
|
||||||
import string
|
import string
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
|
|
||||||
from .._environment import Environment
|
import damask
|
||||||
|
|
||||||
class Marc:
|
class Marc:
|
||||||
"""Wrapper to run DAMASK with MSCMarc."""
|
"""Wrapper to run DAMASK with MSCMarc."""
|
||||||
|
|
||||||
def __init__(self,version=Environment().options['MARC_VERSION']):
|
def __init__(self,version=damask.environment.options['MARC_VERSION']):
|
||||||
"""
|
"""
|
||||||
Create a Marc solver object.
|
Create a Marc solver object.
|
||||||
|
|
||||||
|
|
@ -24,7 +24,7 @@ class Marc:
|
||||||
@property
|
@property
|
||||||
def library_path(self):
|
def library_path(self):
|
||||||
|
|
||||||
path_MSC = Environment().options['MSC_ROOT']
|
path_MSC = damask.environment.options['MSC_ROOT']
|
||||||
path_lib = Path(f'{path_MSC}/mentat{self.version}/shlib/linux64')
|
path_lib = Path(f'{path_MSC}/mentat{self.version}/shlib/linux64')
|
||||||
|
|
||||||
return path_lib if path_lib.is_dir() else None
|
return path_lib if path_lib.is_dir() else None
|
||||||
|
|
@ -33,7 +33,7 @@ class Marc:
|
||||||
@property
|
@property
|
||||||
def tools_path(self):
|
def tools_path(self):
|
||||||
|
|
||||||
path_MSC = Environment().options['MSC_ROOT']
|
path_MSC = damask.environment.options['MSC_ROOT']
|
||||||
path_tools = Path(f'{path_MSC}/marc{self.version}/tools')
|
path_tools = Path(f'{path_MSC}/marc{self.version}/tools')
|
||||||
|
|
||||||
return path_tools if path_tools.is_dir() else None
|
return path_tools if path_tools.is_dir() else None
|
||||||
|
|
@ -49,9 +49,7 @@ class Marc:
|
||||||
):
|
):
|
||||||
|
|
||||||
|
|
||||||
env = Environment()
|
usersub = damask.environment.root_dir/Path(f'src/DAMASK_marc{self.version}').with_suffix('.f90' if compile else '.marc')
|
||||||
|
|
||||||
usersub = env.root_dir/Path(f'src/DAMASK_marc{self.version}').with_suffix('.f90' if compile else '.marc')
|
|
||||||
if not usersub.is_file():
|
if not usersub.is_file():
|
||||||
raise FileNotFoundError("DAMASK4Marc ({}) '{}' not found".format(('source' if compile else 'binary'),usersub))
|
raise FileNotFoundError("DAMASK4Marc ({}) '{}' not found".format(('source' if compile else 'binary'),usersub))
|
||||||
|
|
||||||
|
|
|
||||||
|
|
@ -1,8 +1,8 @@
|
||||||
import setuptools
|
import setuptools
|
||||||
import os
|
from pathlib import Path
|
||||||
import re
|
import re
|
||||||
|
|
||||||
with open(os.path.join(os.path.dirname(__file__),'damask/VERSION')) as f:
|
with open(Path(__file__).parent/'damask/VERSION') as f:
|
||||||
version = re.sub(r'(-([^-]*)).*$',r'.\2',re.sub(r'^v(\d+\.\d+(\.\d+)?)',r'\1',f.readline().strip()))
|
version = re.sub(r'(-([^-]*)).*$',r'.\2',re.sub(r'^v(\d+\.\d+(\.\d+)?)',r'\1',f.readline().strip()))
|
||||||
|
|
||||||
setuptools.setup(
|
setuptools.setup(
|
||||||
|
|
|
||||||
|
|
@ -150,7 +150,7 @@ def om2qu(a):
|
||||||
|
|
||||||
def om2eu(om):
|
def om2eu(om):
|
||||||
"""Rotation matrix to Bunge-Euler angles."""
|
"""Rotation matrix to Bunge-Euler angles."""
|
||||||
if not np.isclose(np.abs(om[2,2]),1.0,1.e-9):
|
if not np.isclose(np.abs(om[2,2]),1.0,0.0):
|
||||||
zeta = 1.0/np.sqrt(1.0-om[2,2]**2)
|
zeta = 1.0/np.sqrt(1.0-om[2,2]**2)
|
||||||
eu = np.array([np.arctan2(om[2,0]*zeta,-om[2,1]*zeta),
|
eu = np.array([np.arctan2(om[2,0]*zeta,-om[2,1]*zeta),
|
||||||
np.arccos(om[2,2]),
|
np.arccos(om[2,2]),
|
||||||
|
|
|
||||||
|
|
@ -248,7 +248,7 @@ subroutine CPFEM_general(mode, ffn, ffn1, temperature_inp, dt, elFE, ip, cauchyS
|
||||||
endif validCalculation
|
endif validCalculation
|
||||||
|
|
||||||
if (debugCPFEM%extensive &
|
if (debugCPFEM%extensive &
|
||||||
.and. (debugCPFEM%element == elCP .and. debugCPFEM%ip == ip) .or. .not. debugCPFEM%selective) then
|
.and. ((debugCPFEM%element == elCP .and. debugCPFEM%ip == ip) .or. .not. debugCPFEM%selective)) then
|
||||||
write(6,'(a,i8,1x,i2,/,12x,6(f10.3,1x)/)') &
|
write(6,'(a,i8,1x,i2,/,12x,6(f10.3,1x)/)') &
|
||||||
'<< CPFEM >> stress/MPa at elFE ip ', elFE, ip, CPFEM_cs(1:6,ip,elCP)*1.0e-6_pReal
|
'<< CPFEM >> stress/MPa at elFE ip ', elFE, ip, CPFEM_cs(1:6,ip,elCP)*1.0e-6_pReal
|
||||||
write(6,'(a,i8,1x,i2,/,6(12x,6(f10.3,1x)/))') &
|
write(6,'(a,i8,1x,i2,/,6(12x,6(f10.3,1x)/))') &
|
||||||
|
|
|
||||||
|
|
@ -529,6 +529,8 @@ subroutine IO_error(error_ID,el,ip,g,instance,ext_msg)
|
||||||
msg = 'unknown material parameter:'
|
msg = 'unknown material parameter:'
|
||||||
case (211)
|
case (211)
|
||||||
msg = 'material parameter out of bounds:'
|
msg = 'material parameter out of bounds:'
|
||||||
|
case (212)
|
||||||
|
msg = 'nonlocal model not supported'
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
! numerics error messages
|
! numerics error messages
|
||||||
|
|
|
||||||
|
|
@ -15,7 +15,8 @@ module constitutive
|
||||||
use results
|
use results
|
||||||
use lattice
|
use lattice
|
||||||
use discretization
|
use discretization
|
||||||
use geometry_plastic_nonlocal
|
use geometry_plastic_nonlocal, only: &
|
||||||
|
geometry_plastic_nonlocal_disable
|
||||||
use source_thermal_dissipation
|
use source_thermal_dissipation
|
||||||
use source_thermal_externalheat
|
use source_thermal_externalheat
|
||||||
use source_damage_isoBrittle
|
use source_damage_isoBrittle
|
||||||
|
|
|
||||||
|
|
@ -386,7 +386,11 @@ module subroutine plastic_nonlocal_init
|
||||||
|
|
||||||
call material_allocateState(plasticState(p),NipcMyPhase,sizeState,sizeDotState,sizeDeltaState)
|
call material_allocateState(plasticState(p),NipcMyPhase,sizeState,sizeDotState,sizeDeltaState)
|
||||||
|
|
||||||
plasticState(p)%nonlocal = config%KeyExists('/nonlocal/')
|
plasticState(p)%nonlocal = config%KeyExists('/nonlocal/')
|
||||||
|
if(plasticState(p)%nonlocal .and. .not. allocated(IPneighborhood)) &
|
||||||
|
call IO_error(212,ext_msg='IPneighborhood does not exist')
|
||||||
|
|
||||||
|
|
||||||
plasticState(p)%offsetDeltaState = 0 ! ToDo: state structure does not follow convention
|
plasticState(p)%offsetDeltaState = 0 ! ToDo: state structure does not follow convention
|
||||||
|
|
||||||
st0%rho => plasticState(p)%state0 (0*prm%sum_N_sl+1:10*prm%sum_N_sl,:)
|
st0%rho => plasticState(p)%state0 (0*prm%sum_N_sl+1:10*prm%sum_N_sl,:)
|
||||||
|
|
|
||||||
|
|
@ -118,6 +118,7 @@ subroutine discretization_grid_init(restart)
|
||||||
call results_addAttribute('origin',origin, 'geometry')
|
call results_addAttribute('origin',origin, 'geometry')
|
||||||
call results_closeJobFile
|
call results_closeJobFile
|
||||||
endif
|
endif
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
! geometry information required by the nonlocal CP model
|
! geometry information required by the nonlocal CP model
|
||||||
call geometry_plastic_nonlocal_setIPvolume(reshape([(product(mySize/real(myGrid,pReal)),j=1,product(myGrid))], &
|
call geometry_plastic_nonlocal_setIPvolume(reshape([(product(mySize/real(myGrid,pReal)),j=1,product(myGrid))], &
|
||||||
|
|
|
||||||
|
|
@ -21,24 +21,24 @@ module discretization_marc
|
||||||
|
|
||||||
implicit none
|
implicit none
|
||||||
private
|
private
|
||||||
|
|
||||||
type tCellNodeDefinition
|
type tCellNodeDefinition
|
||||||
integer, dimension(:,:), allocatable :: parents
|
integer, dimension(:,:), allocatable :: parents
|
||||||
integer, dimension(:,:), allocatable :: weights
|
integer, dimension(:,:), allocatable :: weights
|
||||||
end type tCellNodeDefinition
|
end type tCellNodeDefinition
|
||||||
|
|
||||||
type(tCellNodeDefinition), dimension(:), allocatable :: cellNodeDefinition
|
type(tCellNodeDefinition), dimension(:), allocatable :: cellNodeDefinition
|
||||||
|
|
||||||
real(pReal), public, protected :: &
|
real(pReal), public, protected :: &
|
||||||
mesh_unitlength !< physical length of one unit in mesh
|
mesh_unitlength !< physical length of one unit in mesh
|
||||||
|
|
||||||
integer, dimension(:), allocatable, public :: &
|
integer, dimension(:), allocatable, public :: &
|
||||||
mesh_FEM2DAMASK_elem, & !< DAMASK element ID for Marc element ID
|
mesh_FEM2DAMASK_elem, & !< DAMASK element ID for Marc element ID
|
||||||
mesh_FEM2DAMASK_node !< DAMASK node ID for Marc node ID
|
mesh_FEM2DAMASK_node !< DAMASK node ID for Marc node ID
|
||||||
|
|
||||||
public :: &
|
public :: &
|
||||||
discretization_marc_init
|
discretization_marc_init
|
||||||
|
|
||||||
contains
|
contains
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
|
|
@ -68,16 +68,16 @@ subroutine discretization_marc_init
|
||||||
connectivity_elem
|
connectivity_elem
|
||||||
real(pReal), dimension(:,:,:,:),allocatable :: &
|
real(pReal), dimension(:,:,:,:),allocatable :: &
|
||||||
unscaledNormals
|
unscaledNormals
|
||||||
|
|
||||||
class(tNode), pointer :: &
|
class(tNode), pointer :: &
|
||||||
num_commercialFEM
|
num_commercialFEM
|
||||||
|
|
||||||
write(6,'(/,a)') ' <<<+- discretization_marc init -+>>>'; flush(6)
|
write(6,'(/,a)') ' <<<+- discretization_marc init -+>>>'; flush(6)
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------
|
||||||
! read debug parameters
|
! read debug parameters
|
||||||
debug_e = debug_root%get_asInt('element',defaultVal=1)
|
debug_e = debug_root%get_asInt('element',defaultVal=1)
|
||||||
debug_i = debug_root%get_asInt('integrationpoint',defaultVal=1)
|
debug_i = debug_root%get_asInt('integrationpoint',defaultVal=1)
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------
|
||||||
! read numerics parameter and do sanity check
|
! read numerics parameter and do sanity check
|
||||||
|
|
@ -90,10 +90,10 @@ subroutine discretization_marc_init
|
||||||
|
|
||||||
if (debug_e < 1 .or. debug_e > nElems) call IO_error(602,ext_msg='element')
|
if (debug_e < 1 .or. debug_e > nElems) call IO_error(602,ext_msg='element')
|
||||||
if (debug_i < 1 .or. debug_i > elem%nIPs) call IO_error(602,ext_msg='IP')
|
if (debug_i < 1 .or. debug_i > elem%nIPs) call IO_error(602,ext_msg='IP')
|
||||||
|
|
||||||
FEsolving_execElem = [1,nElems]
|
FEsolving_execElem = [1,nElems]
|
||||||
FEsolving_execIP = [1,elem%nIPs]
|
FEsolving_execIP = [1,elem%nIPs]
|
||||||
|
|
||||||
allocate(cellNodeDefinition(elem%nNodes-1))
|
allocate(cellNodeDefinition(elem%nNodes-1))
|
||||||
allocate(connectivity_cell(elem%NcellNodesPerCell,elem%nIPs,nElems))
|
allocate(connectivity_cell(elem%NcellNodesPerCell,elem%nIPs,nElems))
|
||||||
call buildCells(connectivity_cell,cellNodeDefinition,&
|
call buildCells(connectivity_cell,cellNodeDefinition,&
|
||||||
|
|
@ -108,7 +108,7 @@ subroutine discretization_marc_init
|
||||||
call discretization_init(microstructureAt,homogenizationAt,&
|
call discretization_init(microstructureAt,homogenizationAt,&
|
||||||
IP_reshaped,&
|
IP_reshaped,&
|
||||||
node0_cell)
|
node0_cell)
|
||||||
|
|
||||||
call writeGeometry(elem,connectivity_elem,&
|
call writeGeometry(elem,connectivity_elem,&
|
||||||
reshape(connectivity_cell,[elem%NcellNodesPerCell,elem%nIPs*nElems]),&
|
reshape(connectivity_cell,[elem%NcellNodesPerCell,elem%nIPs*nElems]),&
|
||||||
node0_cell,IP_reshaped)
|
node0_cell,IP_reshaped)
|
||||||
|
|
@ -119,8 +119,9 @@ subroutine discretization_marc_init
|
||||||
unscaledNormals = IPareaNormal(elem,nElems,connectivity_cell,node0_cell)
|
unscaledNormals = IPareaNormal(elem,nElems,connectivity_cell,node0_cell)
|
||||||
call geometry_plastic_nonlocal_setIParea(norm2(unscaledNormals,1))
|
call geometry_plastic_nonlocal_setIParea(norm2(unscaledNormals,1))
|
||||||
call geometry_plastic_nonlocal_setIPareaNormal(unscaledNormals/spread(norm2(unscaledNormals,1),1,3))
|
call geometry_plastic_nonlocal_setIPareaNormal(unscaledNormals/spread(norm2(unscaledNormals,1),1,3))
|
||||||
|
!call geometry_plastic_nonlocal_setIPneighborhood ToDo: Support nonlocal
|
||||||
call geometry_plastic_nonlocal_results
|
call geometry_plastic_nonlocal_results
|
||||||
|
|
||||||
end subroutine discretization_marc_init
|
end subroutine discretization_marc_init
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -139,7 +140,7 @@ subroutine writeGeometry(elem, &
|
||||||
real(pReal), dimension(:,:), intent(in) :: &
|
real(pReal), dimension(:,:), intent(in) :: &
|
||||||
coordinates_nodes, &
|
coordinates_nodes, &
|
||||||
coordinates_points
|
coordinates_points
|
||||||
|
|
||||||
integer, dimension(:,:), allocatable :: &
|
integer, dimension(:,:), allocatable :: &
|
||||||
connectivity_temp
|
connectivity_temp
|
||||||
real(pReal), dimension(:,:), allocatable :: &
|
real(pReal), dimension(:,:), allocatable :: &
|
||||||
|
|
@ -147,24 +148,24 @@ subroutine writeGeometry(elem, &
|
||||||
|
|
||||||
call results_openJobFile
|
call results_openJobFile
|
||||||
call results_closeGroup(results_addGroup('geometry'))
|
call results_closeGroup(results_addGroup('geometry'))
|
||||||
|
|
||||||
connectivity_temp = connectivity_elem
|
connectivity_temp = connectivity_elem
|
||||||
call results_writeDataset('geometry',connectivity_temp,'T_e',&
|
call results_writeDataset('geometry',connectivity_temp,'T_e',&
|
||||||
'connectivity of the elements','-')
|
'connectivity of the elements','-')
|
||||||
|
|
||||||
connectivity_temp = connectivity_cell
|
connectivity_temp = connectivity_cell
|
||||||
call results_writeDataset('geometry',connectivity_temp,'T_c', &
|
call results_writeDataset('geometry',connectivity_temp,'T_c', &
|
||||||
'connectivity of the cells','-')
|
'connectivity of the cells','-')
|
||||||
call results_addAttribute('VTK_TYPE',elem%vtkType,'geometry/T_c')
|
call results_addAttribute('VTK_TYPE',elem%vtkType,'geometry/T_c')
|
||||||
|
|
||||||
coordinates_temp = coordinates_nodes
|
coordinates_temp = coordinates_nodes
|
||||||
call results_writeDataset('geometry',coordinates_temp,'x_n', &
|
call results_writeDataset('geometry',coordinates_temp,'x_n', &
|
||||||
'initial coordinates of the nodes','m')
|
'initial coordinates of the nodes','m')
|
||||||
|
|
||||||
coordinates_temp = coordinates_points
|
coordinates_temp = coordinates_points
|
||||||
call results_writeDataset('geometry',coordinates_temp,'x_p', &
|
call results_writeDataset('geometry',coordinates_temp,'x_p', &
|
||||||
'initial coordinates of the materialpoints','m')
|
'initial coordinates of the materialpoints','m')
|
||||||
|
|
||||||
call results_closeJobFile
|
call results_closeJobFile
|
||||||
|
|
||||||
end subroutine writeGeometry
|
end subroutine writeGeometry
|
||||||
|
|
@ -183,7 +184,7 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
||||||
integer, dimension(:), allocatable, intent(out) :: &
|
integer, dimension(:), allocatable, intent(out) :: &
|
||||||
microstructureAt, &
|
microstructureAt, &
|
||||||
homogenizationAt
|
homogenizationAt
|
||||||
|
|
||||||
integer :: &
|
integer :: &
|
||||||
fileFormatVersion, &
|
fileFormatVersion, &
|
||||||
hypoelasticTableStyle, &
|
hypoelasticTableStyle, &
|
||||||
|
|
@ -193,7 +194,7 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
||||||
integer, dimension(:), allocatable :: &
|
integer, dimension(:), allocatable :: &
|
||||||
matNumber !< material numbers for hypoelastic material
|
matNumber !< material numbers for hypoelastic material
|
||||||
character(len=pStringLen), dimension(:), allocatable :: inputFile !< file content, separated per lines
|
character(len=pStringLen), dimension(:), allocatable :: inputFile !< file content, separated per lines
|
||||||
|
|
||||||
character(len=pStringLen), dimension(:), allocatable :: &
|
character(len=pStringLen), dimension(:), allocatable :: &
|
||||||
nameElemSet
|
nameElemSet
|
||||||
integer, dimension(:,:), allocatable :: &
|
integer, dimension(:,:), allocatable :: &
|
||||||
|
|
@ -209,8 +210,8 @@ subroutine inputRead(elem,node0_elem,connectivity_elem,microstructureAt,homogeni
|
||||||
hypoelasticTableStyle,inputFile)
|
hypoelasticTableStyle,inputFile)
|
||||||
call inputRead_NnodesAndElements(nNodes,nElems,&
|
call inputRead_NnodesAndElements(nNodes,nElems,&
|
||||||
inputFile)
|
inputFile)
|
||||||
|
|
||||||
|
|
||||||
call inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
call inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
||||||
inputFile)
|
inputFile)
|
||||||
|
|
||||||
|
|
@ -239,13 +240,13 @@ end subroutine inputRead
|
||||||
!> @brief Figures out version of Marc input file format
|
!> @brief Figures out version of Marc input file format
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_fileFormat(fileFormat,fileContent)
|
subroutine inputRead_fileFormat(fileFormat,fileContent)
|
||||||
|
|
||||||
integer, intent(out) :: fileFormat
|
integer, intent(out) :: fileFormat
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
integer, allocatable, dimension(:) :: chunkPos
|
integer, allocatable, dimension(:) :: chunkPos
|
||||||
integer :: l
|
integer :: l
|
||||||
|
|
||||||
do l = 1, size(fileContent)
|
do l = 1, size(fileContent)
|
||||||
chunkPos = IO_stringPos(fileContent(l))
|
chunkPos = IO_stringPos(fileContent(l))
|
||||||
if(chunkPos(1) < 2) cycle
|
if(chunkPos(1) < 2) cycle
|
||||||
|
|
@ -262,13 +263,13 @@ end subroutine inputRead_fileFormat
|
||||||
!> @brief Figures out table styles for initial cond and hypoelastic
|
!> @brief Figures out table styles for initial cond and hypoelastic
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_tableStyles(initialcond,hypoelastic,fileContent)
|
subroutine inputRead_tableStyles(initialcond,hypoelastic,fileContent)
|
||||||
|
|
||||||
integer, intent(out) :: initialcond, hypoelastic
|
integer, intent(out) :: initialcond, hypoelastic
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
integer, allocatable, dimension(:) :: chunkPos
|
integer, allocatable, dimension(:) :: chunkPos
|
||||||
integer :: l
|
integer :: l
|
||||||
|
|
||||||
initialcond = 0
|
initialcond = 0
|
||||||
hypoelastic = 0
|
hypoelastic = 0
|
||||||
|
|
||||||
|
|
@ -290,7 +291,7 @@ end subroutine inputRead_tableStyles
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_matNumber(matNumber, &
|
subroutine inputRead_matNumber(matNumber, &
|
||||||
tableStyle,fileContent)
|
tableStyle,fileContent)
|
||||||
|
|
||||||
integer, allocatable, dimension(:), intent(out) :: matNumber
|
integer, allocatable, dimension(:), intent(out) :: matNumber
|
||||||
integer, intent(in) :: tableStyle
|
integer, intent(in) :: tableStyle
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
@ -326,7 +327,7 @@ end subroutine inputRead_matNumber
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_NnodesAndElements(nNodes,nElems,&
|
subroutine inputRead_NnodesAndElements(nNodes,nElems,&
|
||||||
fileContent)
|
fileContent)
|
||||||
|
|
||||||
integer, intent(out) :: nNodes, nElems
|
integer, intent(out) :: nNodes, nElems
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
|
|
@ -355,7 +356,7 @@ end subroutine inputRead_NnodesAndElements
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_NelemSets(nElemSets,maxNelemInSet,&
|
subroutine inputRead_NelemSets(nElemSets,maxNelemInSet,&
|
||||||
fileContent)
|
fileContent)
|
||||||
|
|
||||||
integer, intent(out) :: nElemSets, maxNelemInSet
|
integer, intent(out) :: nElemSets, maxNelemInSet
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
|
|
@ -401,7 +402,7 @@ end subroutine inputRead_NelemSets
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
subroutine inputRead_mapElemSets(nameElemSet,mapElemSet,&
|
||||||
fileContent)
|
fileContent)
|
||||||
|
|
||||||
character(len=pStringLen), dimension(:), allocatable, intent(out) :: nameElemSet
|
character(len=pStringLen), dimension(:), allocatable, intent(out) :: nameElemSet
|
||||||
integer, dimension(:,:), allocatable, intent(out) :: mapElemSet
|
integer, dimension(:,:), allocatable, intent(out) :: mapElemSet
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
@ -434,7 +435,7 @@ end subroutine inputRead_mapElemSets
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine inputRead_mapElems(FEM2DAMASK, &
|
subroutine inputRead_mapElems(FEM2DAMASK, &
|
||||||
nElems,nNodesPerElem,fileContent)
|
nElems,nNodesPerElem,fileContent)
|
||||||
|
|
||||||
integer, allocatable, dimension(:), intent(out) :: FEM2DAMASK
|
integer, allocatable, dimension(:), intent(out) :: FEM2DAMASK
|
||||||
|
|
||||||
integer, intent(in) :: nElems, & !< number of elements
|
integer, intent(in) :: nElems, & !< number of elements
|
||||||
|
|
@ -492,8 +493,8 @@ subroutine inputRead_mapNodes(FEM2DAMASK, &
|
||||||
chunkPos = IO_stringPos(fileContent(l))
|
chunkPos = IO_stringPos(fileContent(l))
|
||||||
if(chunkPos(1) < 1) cycle
|
if(chunkPos(1) < 1) cycle
|
||||||
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
||||||
|
chunkPos = [1,1,10]
|
||||||
do i = 1,nNodes
|
do i = 1,nNodes
|
||||||
chunkPos = IO_stringPos(fileContent(l+1+i))
|
|
||||||
map_unsorted(:,i) = [IO_intValue(fileContent(l+1+i),chunkPos,1),i]
|
map_unsorted(:,i) = [IO_intValue(fileContent(l+1+i),chunkPos,1),i]
|
||||||
enddo
|
enddo
|
||||||
exit
|
exit
|
||||||
|
|
@ -515,10 +516,10 @@ end subroutine inputRead_mapNodes
|
||||||
subroutine inputRead_elemNodes(nodes, &
|
subroutine inputRead_elemNodes(nodes, &
|
||||||
nNode,fileContent)
|
nNode,fileContent)
|
||||||
|
|
||||||
real(pReal), allocatable, dimension(:,:), intent(out) :: nodes
|
real(pReal), allocatable, dimension(:,:), intent(out) :: nodes
|
||||||
integer, intent(in) :: nNode
|
integer, intent(in) :: nNode
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
integer, allocatable, dimension(:) :: chunkPos
|
integer, allocatable, dimension(:) :: chunkPos
|
||||||
integer :: i,j,m,l
|
integer :: i,j,m,l
|
||||||
|
|
||||||
|
|
@ -528,8 +529,8 @@ subroutine inputRead_elemNodes(nodes, &
|
||||||
chunkPos = IO_stringPos(fileContent(l))
|
chunkPos = IO_stringPos(fileContent(l))
|
||||||
if(chunkPos(1) < 1) cycle
|
if(chunkPos(1) < 1) cycle
|
||||||
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
if(IO_lc(IO_stringValue(fileContent(l),chunkPos,1)) == 'coordinates') then
|
||||||
|
chunkPos = [4,1,10,11,30,31,50,51,70]
|
||||||
do i=1,nNode
|
do i=1,nNode
|
||||||
chunkPos = IO_stringPos(fileContent(l+1+i))
|
|
||||||
m = mesh_FEM2DAMASK_node(IO_intValue(fileContent(l+1+i),chunkPos,1))
|
m = mesh_FEM2DAMASK_node(IO_intValue(fileContent(l+1+i),chunkPos,1))
|
||||||
do j = 1,3
|
do j = 1,3
|
||||||
nodes(j,m) = mesh_unitlength * IO_floatValue(fileContent(l+1+i),chunkPos,j+1)
|
nodes(j,m) = mesh_unitlength * IO_floatValue(fileContent(l+1+i),chunkPos,j+1)
|
||||||
|
|
@ -580,15 +581,15 @@ subroutine inputRead_elemType(elem, &
|
||||||
endif
|
endif
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
contains
|
contains
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief mapping of Marc element types to internal representation
|
!> @brief mapping of Marc element types to internal representation
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
integer function mapElemtype(what)
|
integer function mapElemtype(what)
|
||||||
|
|
||||||
character(len=*), intent(in) :: what
|
character(len=*), intent(in) :: what
|
||||||
|
|
||||||
select case (IO_lc(what))
|
select case (IO_lc(what))
|
||||||
case ( '6')
|
case ( '6')
|
||||||
mapElemtype = 1 ! Two-dimensional Plane Strain Triangle
|
mapElemtype = 1 ! Two-dimensional Plane Strain Triangle
|
||||||
|
|
@ -630,20 +631,20 @@ end subroutine inputRead_elemType
|
||||||
!> @brief Stores node IDs
|
!> @brief Stores node IDs
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
function inputRead_connectivityElem(nElem,nNodes,fileContent)
|
function inputRead_connectivityElem(nElem,nNodes,fileContent)
|
||||||
|
|
||||||
integer, intent(in) :: &
|
integer, intent(in) :: &
|
||||||
nElem, &
|
nElem, &
|
||||||
nNodes !< number of nodes per element
|
nNodes !< number of nodes per element
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
integer, dimension(nNodes,nElem) :: &
|
integer, dimension(nNodes,nElem) :: &
|
||||||
inputRead_connectivityElem
|
inputRead_connectivityElem
|
||||||
|
|
||||||
integer, allocatable, dimension(:) :: chunkPos
|
integer, allocatable, dimension(:) :: chunkPos
|
||||||
|
|
||||||
integer, dimension(1+nElem) :: contInts
|
integer, dimension(1+nElem) :: contInts
|
||||||
integer :: i,k,j,t,e,l,nNodesAlreadyRead
|
integer :: i,k,j,t,e,l,nNodesAlreadyRead
|
||||||
|
|
||||||
do l = 1, size(fileContent)
|
do l = 1, size(fileContent)
|
||||||
chunkPos = IO_stringPos(fileContent(l))
|
chunkPos = IO_stringPos(fileContent(l))
|
||||||
if(chunkPos(1) < 1) cycle
|
if(chunkPos(1) < 1) cycle
|
||||||
|
|
@ -694,7 +695,7 @@ subroutine inputRead_microstructureAndHomogenization(microstructureAt,homogeniza
|
||||||
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
character(len=*), dimension(:), intent(in) :: fileContent !< file content, separated per lines
|
||||||
|
|
||||||
integer, allocatable, dimension(:) :: chunkPos
|
integer, allocatable, dimension(:) :: chunkPos
|
||||||
|
|
||||||
integer, dimension(1+nElem) :: contInts
|
integer, dimension(1+nElem) :: contInts
|
||||||
integer :: i,j,t,sv,myVal,e,nNodesAlreadyRead,l,k,m
|
integer :: i,j,t,sv,myVal,e,nNodesAlreadyRead,l,k,m
|
||||||
|
|
||||||
|
|
@ -727,42 +728,41 @@ subroutine inputRead_microstructureAndHomogenization(microstructureAt,homogeniza
|
||||||
endif
|
endif
|
||||||
endif
|
endif
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
end subroutine inputRead_microstructureAndHomogenization
|
end subroutine inputRead_microstructureAndHomogenization
|
||||||
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Calculates cell node coordinates from element node coordinates
|
!> @brief Determine cell connectivity and definition of cell nodes
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
elem,connectivity_elem)
|
elem,connectivity_elem)
|
||||||
|
|
||||||
type(tCellNodeDefinition), dimension(:), intent(out) :: cellNodeDefinition ! definition of cell nodes for increasing number of parents
|
type(tCellNodeDefinition), dimension(:), intent(out) :: cellNodeDefinition ! definition of cell nodes for increasing number of parents
|
||||||
integer, dimension(:,:,:),intent(out) :: connectivity_cell
|
integer, dimension(:,:,:),intent(out) :: connectivity_cell
|
||||||
|
|
||||||
type(tElement), intent(in) :: elem ! element definition
|
type(tElement), intent(in) :: elem ! element definition
|
||||||
integer, dimension(:,:), intent(in) :: connectivity_elem ! connectivity of the elements
|
integer, dimension(:,:), intent(in) :: connectivity_elem ! connectivity of the elements
|
||||||
|
|
||||||
integer,dimension(:), allocatable :: candidates_local
|
integer,dimension(:), allocatable :: candidates_local
|
||||||
integer,dimension(:,:), allocatable :: parentsAndWeights,candidates_global
|
integer,dimension(:,:), allocatable :: parentsAndWeights,candidates_global
|
||||||
|
|
||||||
integer :: e, n, c, p, s,i,m,j,nParentNodes,nCellNode,Nelem,candidateID
|
integer :: e,n,c,p,s,i,m,j,&
|
||||||
|
nParentNodes,nCellNode,Nelem,candidateID
|
||||||
|
|
||||||
Nelem = size(connectivity_elem,2)
|
Nelem = size(connectivity_elem,2)
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
! initialize global connectivity to negative local connectivity
|
! initialize global connectivity to negative local connectivity
|
||||||
connectivity_cell = -spread(elem%cell,3,Nelem) ! local cell node ID
|
connectivity_cell = -spread(elem%cell,3,Nelem) ! local cell node ID
|
||||||
|
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
! set connectivity of cell nodes that coincide with FE nodes (defined by 1 parent node)
|
! set connectivity of cell nodes that coincide with FE nodes (defined by 1 parent node)
|
||||||
! and renumber local (negative) to global (positive) node ID
|
! and renumber local (negative) to global (positive) node ID
|
||||||
do e = 1, Nelem
|
do e = 1, Nelem
|
||||||
do c = 1, elem%NcellNodes
|
do c = 1, elem%NcellNodes
|
||||||
realNode: if (count(elem%cellNodeParentNodeWeights(:,c) /= 0) == 1) then
|
realNode: if (count(elem%cellNodeParentNodeWeights(:,c) /= 0) == 1) then
|
||||||
where(connectivity_cell(:,:,e) == -c)
|
where(connectivity_cell(:,:,e) == -c) connectivity_cell(:,:,e) = connectivity_elem(c,e)
|
||||||
connectivity_cell(:,:,e) = connectivity_elem(c,e)
|
|
||||||
end where
|
|
||||||
endif realNode
|
endif realNode
|
||||||
enddo
|
enddo
|
||||||
enddo
|
enddo
|
||||||
|
|
@ -772,7 +772,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
! set connectivity of cell nodes that are defined by 2,...,nNodes real nodes
|
! set connectivity of cell nodes that are defined by 2,...,nNodes real nodes
|
||||||
do nParentNodes = 2, elem%nNodes
|
do nParentNodes = 2, elem%nNodes
|
||||||
|
|
||||||
! get IDs of local cell nodes that are defined by the current number of parent nodes
|
! get IDs of local cell nodes that are defined by the current number of parent nodes
|
||||||
candidates_local = [integer::]
|
candidates_local = [integer::]
|
||||||
do c = 1, elem%NcellNodes
|
do c = 1, elem%NcellNodes
|
||||||
|
|
@ -780,11 +780,11 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
candidates_local = [candidates_local,c]
|
candidates_local = [candidates_local,c]
|
||||||
enddo
|
enddo
|
||||||
s = size(candidates_local)
|
s = size(candidates_local)
|
||||||
|
|
||||||
if (allocated(candidates_global)) deallocate(candidates_global)
|
if (allocated(candidates_global)) deallocate(candidates_global)
|
||||||
allocate(candidates_global(nParentNodes*2+2,s*Nelem)) ! stores parent node ID + weight together with element ID and cellnode id (local)
|
allocate(candidates_global(nParentNodes*2+2,s*Nelem)) ! stores parent node ID + weight together with element ID and cellnode id (local)
|
||||||
parentsAndWeights = reshape([(0, i = 1,2*nParentNodes)],[nParentNodes,2]) ! (re)allocate
|
parentsAndWeights = reshape([(0, i = 1,2*nParentNodes)],[nParentNodes,2]) ! (re)allocate
|
||||||
|
|
||||||
do e = 1, Nelem
|
do e = 1, Nelem
|
||||||
do i = 1, size(candidates_local)
|
do i = 1, size(candidates_local)
|
||||||
candidateID = (e-1)*size(candidates_local)+i ! including duplicates, runs to (Nelem*size(candidates_local))
|
candidateID = (e-1)*size(candidates_local)+i ! including duplicates, runs to (Nelem*size(candidates_local))
|
||||||
|
|
@ -792,18 +792,18 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
p = 0
|
p = 0
|
||||||
do j = 1, size(elem%cellNodeParentNodeWeights(:,c))
|
do j = 1, size(elem%cellNodeParentNodeWeights(:,c))
|
||||||
if (elem%cellNodeParentNodeWeights(j,c) /= 0) then ! real node 'j' partly defines cell node 'c'
|
if (elem%cellNodeParentNodeWeights(j,c) /= 0) then ! real node 'j' partly defines cell node 'c'
|
||||||
p = p + 1
|
p = p + 1
|
||||||
parentsAndWeights(p,1:2) = [connectivity_elem(j,e),elem%cellNodeParentNodeWeights(j,c)]
|
parentsAndWeights(p,1:2) = [connectivity_elem(j,e),elem%cellNodeParentNodeWeights(j,c)]
|
||||||
endif
|
endif
|
||||||
enddo
|
enddo
|
||||||
! store (and order) real node IDs and their weights together with the element number and local ID
|
! store (and order) real node IDs and their weights together with the element number and local ID
|
||||||
do p = 1, nParentNodes
|
do p = 1, nParentNodes
|
||||||
m = maxloc(parentsAndWeights(:,1),1)
|
m = maxloc(parentsAndWeights(:,1),1)
|
||||||
|
|
||||||
candidates_global(p, candidateID) = parentsAndWeights(m,1)
|
candidates_global(p, candidateID) = parentsAndWeights(m,1)
|
||||||
candidates_global(p+nParentNodes, candidateID) = parentsAndWeights(m,2)
|
candidates_global(p+nParentNodes, candidateID) = parentsAndWeights(m,2)
|
||||||
candidates_global(nParentNodes*2+1:nParentNodes*2+2,candidateID) = [e,c]
|
candidates_global(nParentNodes*2+1:nParentNodes*2+2,candidateID) = [e,c]
|
||||||
|
|
||||||
parentsAndWeights(m,1) = -huge(parentsAndWeights(m,1)) ! out of the competition
|
parentsAndWeights(m,1) = -huge(parentsAndWeights(m,1)) ! out of the competition
|
||||||
enddo
|
enddo
|
||||||
enddo
|
enddo
|
||||||
|
|
@ -811,7 +811,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
|
|
||||||
! sort according to real node IDs + weight (from left to right)
|
! sort according to real node IDs + weight (from left to right)
|
||||||
call math_sort(candidates_global,sortDim=1) ! sort according to first column
|
call math_sort(candidates_global,sortDim=1) ! sort according to first column
|
||||||
|
|
||||||
do p = 2, nParentNodes*2
|
do p = 2, nParentNodes*2
|
||||||
n = 1
|
n = 1
|
||||||
do while(n <= size(candidates_local)*Nelem)
|
do while(n <= size(candidates_local)*Nelem)
|
||||||
|
|
@ -826,11 +826,11 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
n = e+1
|
n = e+1
|
||||||
enddo
|
enddo
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
i = uniqueRows(candidates_global(1:2*nParentNodes,:))
|
i = uniqueRows(candidates_global(1:2*nParentNodes,:))
|
||||||
allocate(cellNodeDefinition(nParentNodes-1)%parents(i,nParentNodes))
|
allocate(cellNodeDefinition(nParentNodes-1)%parents(i,nParentNodes))
|
||||||
allocate(cellNodeDefinition(nParentNodes-1)%weights(i,nParentNodes))
|
allocate(cellNodeDefinition(nParentNodes-1)%weights(i,nParentNodes))
|
||||||
|
|
||||||
i = 1
|
i = 1
|
||||||
n = 1
|
n = 1
|
||||||
do while(n <= size(candidates_local)*Nelem)
|
do while(n <= size(candidates_local)*Nelem)
|
||||||
|
|
@ -846,7 +846,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
where (connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) == -candidates_global(nParentNodes*2+2,n+j)) ! still locally defined
|
where (connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) == -candidates_global(nParentNodes*2+2,n+j)) ! still locally defined
|
||||||
connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) = nCellNode + 1 ! gets current new cell node id
|
connectivity_cell(:,:,candidates_global(nParentNodes*2+1,n+j)) = nCellNode + 1 ! gets current new cell node id
|
||||||
end where
|
end where
|
||||||
|
|
||||||
j = j+1
|
j = j+1
|
||||||
enddo
|
enddo
|
||||||
nCellNode = nCellNode + 1
|
nCellNode = nCellNode + 1
|
||||||
|
|
@ -863,7 +863,7 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
!> @brief count unique rows (same rows need to be stored consecutively)
|
!> @brief count unique rows (same rows need to be stored consecutively)
|
||||||
!------------------------------------------------------------------------------------------------
|
!------------------------------------------------------------------------------------------------
|
||||||
pure function uniqueRows(A) result(u)
|
pure function uniqueRows(A) result(u)
|
||||||
|
|
||||||
integer, dimension(:,:), intent(in) :: A !< array, rows need to be sorted
|
integer, dimension(:,:), intent(in) :: A !< array, rows need to be sorted
|
||||||
|
|
||||||
integer :: &
|
integer :: &
|
||||||
|
|
@ -882,14 +882,14 @@ subroutine buildCells(connectivity_cell,cellNodeDefinition, &
|
||||||
u = u+1
|
u = u+1
|
||||||
r = r+d
|
r = r+d
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
end function uniqueRows
|
end function uniqueRows
|
||||||
|
|
||||||
end subroutine buildCells
|
end subroutine buildCells
|
||||||
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Calculates cell node coordinates from element node coordinates
|
!> @brief Calculate cell node coordinates from element node coordinates
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine buildCellNodes(node_cell, &
|
subroutine buildCellNodes(node_cell, &
|
||||||
definition,node_elem)
|
definition,node_elem)
|
||||||
|
|
@ -897,9 +897,9 @@ subroutine buildCellNodes(node_cell, &
|
||||||
real(pReal), dimension(:,:), intent(out) :: node_cell !< cell node coordinates
|
real(pReal), dimension(:,:), intent(out) :: node_cell !< cell node coordinates
|
||||||
type(tCellNodeDefinition), dimension(:), intent(in) :: definition !< cell node definition (weights and parents)
|
type(tCellNodeDefinition), dimension(:), intent(in) :: definition !< cell node definition (weights and parents)
|
||||||
real(pReal), dimension(:,:), intent(in) :: node_elem !< element nodes
|
real(pReal), dimension(:,:), intent(in) :: node_elem !< element nodes
|
||||||
|
|
||||||
integer :: i, j, k, n
|
integer :: i, j, k, n
|
||||||
|
|
||||||
n = size(node_elem,2)
|
n = size(node_elem,2)
|
||||||
node_cell(:,1:n) = node_elem !< initial nodes coincide with element nodes
|
node_cell(:,1:n) = node_elem !< initial nodes coincide with element nodes
|
||||||
|
|
||||||
|
|
@ -914,12 +914,12 @@ subroutine buildCellNodes(node_cell, &
|
||||||
node_cell(:,n) = node_cell(:,n)/real(sum(definition(i)%weights(j,:)),pReal)
|
node_cell(:,n) = node_cell(:,n)/real(sum(definition(i)%weights(j,:)),pReal)
|
||||||
enddo
|
enddo
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
end subroutine buildCellNodes
|
end subroutine buildCellNodes
|
||||||
|
|
||||||
|
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
!> @brief Calculates IP coordinates as center of cell
|
!> @brief Calculate IP coordinates as center of cell
|
||||||
!--------------------------------------------------------------------------------------------------
|
!--------------------------------------------------------------------------------------------------
|
||||||
subroutine buildIPcoordinates(IPcoordinates, &
|
subroutine buildIPcoordinates(IPcoordinates, &
|
||||||
connectivity_cell,node_cell)
|
connectivity_cell,node_cell)
|
||||||
|
|
@ -927,7 +927,7 @@ subroutine buildIPcoordinates(IPcoordinates, &
|
||||||
real(pReal), dimension(:,:), intent(out):: IPcoordinates !< cell-center/IP coordinates
|
real(pReal), dimension(:,:), intent(out):: IPcoordinates !< cell-center/IP coordinates
|
||||||
integer, dimension(:,:), intent(in) :: connectivity_cell !< connectivity for each cell
|
integer, dimension(:,:), intent(in) :: connectivity_cell !< connectivity for each cell
|
||||||
real(pReal), dimension(:,:), intent(in) :: node_cell !< cell node coordinates
|
real(pReal), dimension(:,:), intent(in) :: node_cell !< cell node coordinates
|
||||||
|
|
||||||
integer :: i, n
|
integer :: i, n
|
||||||
|
|
||||||
do i = 1, size(connectivity_cell,2)
|
do i = 1, size(connectivity_cell,2)
|
||||||
|
|
@ -938,7 +938,7 @@ subroutine buildIPcoordinates(IPcoordinates, &
|
||||||
enddo
|
enddo
|
||||||
IPcoordinates(:,i) = IPcoordinates(:,i)/real(size(connectivity_cell,1),pReal)
|
IPcoordinates(:,i) = IPcoordinates(:,i)/real(size(connectivity_cell,1),pReal)
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
end subroutine buildIPcoordinates
|
end subroutine buildIPcoordinates
|
||||||
|
|
||||||
|
|
||||||
|
|
@ -948,11 +948,11 @@ end subroutine buildIPcoordinates
|
||||||
!> 2D cells assume an element depth of 1.0
|
!> 2D cells assume an element depth of 1.0
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
function IPvolume(elem,node,connectivity)
|
function IPvolume(elem,node,connectivity)
|
||||||
|
|
||||||
type(tElement), intent(in) :: elem
|
type(tElement), intent(in) :: elem
|
||||||
real(pReal), dimension(:,:), intent(in) :: node
|
real(pReal), dimension(:,:), intent(in) :: node
|
||||||
integer, dimension(:,:,:), intent(in) :: connectivity
|
integer, dimension(:,:,:), intent(in) :: connectivity
|
||||||
|
|
||||||
real(pReal), dimension(elem%nIPs,size(connectivity,3)) :: IPvolume
|
real(pReal), dimension(elem%nIPs,size(connectivity,3)) :: IPvolume
|
||||||
real(pReal), dimension(3) :: x0,x1,x2,x3,x4,x5,x6,x7
|
real(pReal), dimension(3) :: x0,x1,x2,x3,x4,x5,x6,x7
|
||||||
|
|
||||||
|
|
@ -1011,19 +1011,19 @@ function IPareaNormal(elem,nElem,connectivity,node)
|
||||||
integer, intent(in) :: nElem
|
integer, intent(in) :: nElem
|
||||||
integer, dimension(:,:,:), intent(in) :: connectivity
|
integer, dimension(:,:,:), intent(in) :: connectivity
|
||||||
real(pReal), dimension(:,:), intent(in) :: node
|
real(pReal), dimension(:,:), intent(in) :: node
|
||||||
|
|
||||||
real(pReal), dimension(3,elem%nIPneighbors,elem%nIPs,nElem) :: ipAreaNormal
|
real(pReal), dimension(3,elem%nIPneighbors,elem%nIPs,nElem) :: ipAreaNormal
|
||||||
|
|
||||||
real(pReal), dimension (3,size(elem%cellFace,1)) :: nodePos
|
real(pReal), dimension (3,size(elem%cellFace,1)) :: nodePos
|
||||||
integer :: e,i,f,n,m
|
integer :: e,i,f,n,m
|
||||||
|
|
||||||
m = size(elem%cellFace,1)
|
m = size(elem%cellFace,1)
|
||||||
|
|
||||||
do e = 1,nElem
|
do e = 1,nElem
|
||||||
do i = 1,elem%nIPs
|
do i = 1,elem%nIPs
|
||||||
do f = 1,elem%nIPneighbors
|
do f = 1,elem%nIPneighbors
|
||||||
nodePos = node(1:3,connectivity(elem%cellface(1:m,f),i,e))
|
nodePos = node(1:3,connectivity(elem%cellface(1:m,f),i,e))
|
||||||
|
|
||||||
select case (elem%cellType)
|
select case (elem%cellType)
|
||||||
case (1,2) ! 2D 3 or 4 node
|
case (1,2) ! 2D 3 or 4 node
|
||||||
IPareaNormal(1,f,i,e) = nodePos(2,2) - nodePos(2,1) ! x_normal = y_connectingVector
|
IPareaNormal(1,f,i,e) = nodePos(2,2) - nodePos(2,1) ! x_normal = y_connectingVector
|
||||||
|
|
@ -1038,7 +1038,7 @@ function IPareaNormal(elem,nElem,connectivity,node)
|
||||||
! the sum has to be divided by two; this whole prcedure tries to compensate for
|
! the sum has to be divided by two; this whole prcedure tries to compensate for
|
||||||
! probable non-planar cell surfaces
|
! probable non-planar cell surfaces
|
||||||
IPareaNormal(1:3,f,i,e) = 0.0_pReal
|
IPareaNormal(1:3,f,i,e) = 0.0_pReal
|
||||||
do n = 1, m
|
do n = 1, m
|
||||||
IPareaNormal(1:3,f,i,e) = IPareaNormal(1:3,f,i,e) &
|
IPareaNormal(1:3,f,i,e) = IPareaNormal(1:3,f,i,e) &
|
||||||
+ math_cross(nodePos(1:3,mod(n+0,m)+1) - nodePos(1:3,n), &
|
+ math_cross(nodePos(1:3,mod(n+0,m)+1) - nodePos(1:3,n), &
|
||||||
nodePos(1:3,mod(n+1,m)+1) - nodePos(1:3,n)) * 0.5_pReal
|
nodePos(1:3,mod(n+1,m)+1) - nodePos(1:3,n)) * 0.5_pReal
|
||||||
|
|
|
||||||
|
|
@ -464,6 +464,8 @@ subroutine selfTest
|
||||||
real(pReal), dimension(4) :: qu
|
real(pReal), dimension(4) :: qu
|
||||||
type(quaternion) :: q, q_2
|
type(quaternion) :: q, q_2
|
||||||
|
|
||||||
|
if(dNeq(abs(P),1.0_pReal)) call IO_error(0,ext_msg='P not in {-1,+1}')
|
||||||
|
|
||||||
call random_number(qu)
|
call random_number(qu)
|
||||||
qu = (qu-0.5_pReal) * 2.0_pReal
|
qu = (qu-0.5_pReal) * 2.0_pReal
|
||||||
q = quaternion(qu)
|
q = quaternion(qu)
|
||||||
|
|
|
||||||
|
|
@ -574,6 +574,7 @@ end function om2qu
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
!> @author Marc De Graef, Carnegie Mellon University
|
!> @author Marc De Graef, Carnegie Mellon University
|
||||||
!> @brief orientation matrix to Euler angles
|
!> @brief orientation matrix to Euler angles
|
||||||
|
!> @details Two step check for special cases to avoid invalid operations (not needed for python)
|
||||||
!---------------------------------------------------------------------------------------------------
|
!---------------------------------------------------------------------------------------------------
|
||||||
pure function om2eu(om) result(eu)
|
pure function om2eu(om) result(eu)
|
||||||
|
|
||||||
|
|
@ -581,16 +582,16 @@ pure function om2eu(om) result(eu)
|
||||||
real(pReal), dimension(3) :: eu
|
real(pReal), dimension(3) :: eu
|
||||||
real(pReal) :: zeta
|
real(pReal) :: zeta
|
||||||
|
|
||||||
if (abs(om(3,3)) < 1.0_pReal) then
|
if (dNeq(abs(om(3,3)),1.0_pReal,1.e-8_pReal)) then
|
||||||
zeta = 1.0_pReal/sqrt(1.0_pReal-om(3,3)**2.0_pReal)
|
zeta = 1.0_pReal/sqrt(math_clip(1.0_pReal-om(3,3)**2.0_pReal,1e-64_pReal,1.0_pReal))
|
||||||
eu = [atan2(om(3,1)*zeta,-om(3,2)*zeta), &
|
eu = [atan2(om(3,1)*zeta,-om(3,2)*zeta), &
|
||||||
acos(om(3,3)), &
|
acos(math_clip(om(3,3),-1.0_pReal,1.0_pReal)), &
|
||||||
atan2(om(1,3)*zeta, om(2,3)*zeta)]
|
atan2(om(1,3)*zeta, om(2,3)*zeta)]
|
||||||
else
|
else
|
||||||
eu = [atan2(om(1,2),om(1,1)), 0.5_pReal*PI*(1.0_pReal-om(3,3)),0.0_pReal ]
|
eu = [atan2(om(1,2),om(1,1)), 0.5_pReal*PI*(1.0_pReal-om(3,3)),0.0_pReal ]
|
||||||
end if
|
end if
|
||||||
|
where(abs(eu) < 1.e-8_pReal) eu = 0.0_pReal
|
||||||
where(eu<0.0_pReal) eu = mod(eu+2.0_pReal*PI,[2.0_pReal*PI,PI,2.0_pReal*PI])
|
where(eu<0.0_pReal) eu = mod(eu+2.0_pReal*PI,[2.0_pReal*PI,PI,2.0_pReal*PI])
|
||||||
|
|
||||||
end function om2eu
|
end function om2eu
|
||||||
|
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue