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DAMASK_EICMD
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only look for opening part of <CellData> tag

This commit is contained in:
Philip Eisenlohr 2021-11-09 15:10:19 -05:00
parent 292449aca9
commit 186b688b04
1 changed files with 18 additions and 18 deletions
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36
src/grid/discretization_grid.f90
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@ -75,7 +75,7 @@ subroutine discretization_grid_init(restart)
print'(/,a)', ' <<<+- discretization_grid init -+>>>'; flush(IO_STDOUT) print'(/,a)', ' <<<+- discretization_grid init -+>>>'; flush(IO_STDOUT)
if(worldrank == 0) then if (worldrank == 0) then
fileContent = IO_read(interface_geomFile) fileContent = IO_read(interface_geomFile)
call readVTI(grid,geomSize,origin,materialAt_global,fileContent) call readVTI(grid,geomSize,origin,materialAt_global,fileContent)
fname = interface_geomFile fname = interface_geomFile
@ -100,7 +100,7 @@ subroutine discretization_grid_init(restart)
print'(a,3(es12.5))', ' size x y z: ', geomSize print'(a,3(es12.5))', ' size x y z: ', geomSize
print'(a,3(es12.5))', ' origin x y z: ', origin print'(a,3(es12.5))', ' origin x y z: ', origin
if(worldsize>grid(3)) call IO_error(894, ext_msg='number of processes exceeds grid(3)') if (worldsize>grid(3)) call IO_error(894, ext_msg='number of processes exceeds grid(3)')
call fftw_mpi_init call fftw_mpi_init
devNull = fftw_mpi_local_size_3d(int(grid(3),C_INTPTR_T), & devNull = fftw_mpi_local_size_3d(int(grid(3),C_INTPTR_T), &
@ -109,7 +109,7 @@ subroutine discretization_grid_init(restart)
PETSC_COMM_WORLD, & PETSC_COMM_WORLD, &
z, & ! domain grid size along z z, & ! domain grid size along z
z_offset) ! domain grid offset along z z_offset) ! domain grid offset along z
if(z==0_C_INTPTR_T) call IO_error(894, ext_msg='Cannot distribute MPI processes') if (z==0_C_INTPTR_T) call IO_error(894, ext_msg='Cannot distribute MPI processes')
grid3 = int(z) grid3 = int(z)
grid3Offset = int(z_offset) grid3Offset = int(z_offset)
@ -136,7 +136,7 @@ subroutine discretization_grid_init(restart)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! store geometry information for post processing ! store geometry information for post processing
if(.not. restart) then if (.not. restart) then
call results_openJobFile call results_openJobFile
call results_closeGroup(results_addGroup('geometry')) call results_closeGroup(results_addGroup('geometry'))
call results_addAttribute('cells', grid, '/geometry') call results_addAttribute('cells', grid, '/geometry')
@ -202,7 +202,7 @@ subroutine readVTI(grid,geomSize,origin,material, &
if (endPos < startPos) endPos = len(fileContent,kind=pI64) ! end of file without new line if (endPos < startPos) endPos = len(fileContent,kind=pI64) ! end of file without new line
if (.not. inFile) then if (.not. inFile) then
if(index(fileContent(startPos:endPos),'<VTKFile',kind=pI64) /= 0_pI64) then if (index(fileContent(startPos:endPos),'<VTKFile',kind=pI64) /= 0_pI64) then
inFile = .true. inFile = .true.
if (.not. fileFormatOk(fileContent(startPos:endPos))) call IO_error(error_ID = 844, ext_msg='file format') if (.not. fileFormatOk(fileContent(startPos:endPos))) call IO_error(error_ID = 844, ext_msg='file format')
headerType = merge('UInt64','UInt32',getXMLValue(fileContent(startPos:endPos),'header_type')=='UInt64') headerType = merge('UInt64','UInt32',getXMLValue(fileContent(startPos:endPos),'header_type')=='UInt64')
@ -215,7 +215,7 @@ subroutine readVTI(grid,geomSize,origin,material, &
call cellsSizeOrigin(grid,geomSize,origin,fileContent(startPos:endPos)) call cellsSizeOrigin(grid,geomSize,origin,fileContent(startPos:endPos))
endif endif
else else
if (index(fileContent(startPos:endPos),'<CellData>',kind=pI64) /= 0_pI64) then if (index(fileContent(startPos:endPos),'<CellData',kind=pI64) /= 0_pI64) then
gotCellData = .true. gotCellData = .true.
do while (index(fileContent(startPos:endPos),'</CellData>',kind=pI64) == 0_pI64) do while (index(fileContent(startPos:endPos),'</CellData>',kind=pI64) == 0_pI64)
if (index(fileContent(startPos:endPos),'<DataArray',kind=pI64) /= 0_pI64 .and. & if (index(fileContent(startPos:endPos),'<DataArray',kind=pI64) /= 0_pI64 .and. &
@ -243,12 +243,12 @@ subroutine readVTI(grid,geomSize,origin,material, &
enddo enddo
if(.not. allocated(material)) call IO_error(error_ID = 844, ext_msg='material data not found') if (.not. allocated(material)) call IO_error(error_ID = 844, ext_msg='material data not found')
if(size(material) /= product(grid)) call IO_error(error_ID = 844, ext_msg='size(material)') if (size(material) /= product(grid)) call IO_error(error_ID = 844, ext_msg='size(material)')
if(any(geomSize<=0)) call IO_error(error_ID = 844, ext_msg='size') if (any(geomSize<=0)) call IO_error(error_ID = 844, ext_msg='size')
if(any(grid<1)) call IO_error(error_ID = 844, ext_msg='grid') if (any(grid<1)) call IO_error(error_ID = 844, ext_msg='grid')
material = material + 1 material = material + 1
if(any(material<1)) call IO_error(error_ID = 844, ext_msg='material ID < 0') if (any(material<1)) call IO_error(error_ID = 844, ext_msg='material ID < 0')
contains contains
@ -352,7 +352,7 @@ subroutine readVTI(grid,geomSize,origin,material, &
integer(C_SIGNED_CHAR), dimension(:), allocatable :: bytes integer(C_SIGNED_CHAR), dimension(:), allocatable :: bytes
if(compressed) then if (compressed) then
bytes = asBytes_compressed(base64_str,headerType) bytes = asBytes_compressed(base64_str,headerType)
else else
bytes = asBytes_uncompressed(base64_str,headerType) bytes = asBytes_uncompressed(base64_str,headerType)
@ -379,12 +379,12 @@ subroutine readVTI(grid,geomSize,origin,material, &
integer(pI64), dimension(:), allocatable :: temp, size_inflated, size_deflated integer(pI64), dimension(:), allocatable :: temp, size_inflated, size_deflated
integer(pI64) :: headerLen, nBlock, b,s,e integer(pI64) :: headerLen, nBlock, b,s,e
if (headerType == 'UInt32') then if (headerType == 'UInt32') then
temp = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(:base64_nChar(4_pI64)))),pI64) temp = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(:base64_nChar(4_pI64)))),pI64)
nBlock = int(temp(1),pI64) nBlock = int(temp(1),pI64)
headerLen = 4_pI64 * (3_pI64 + nBlock) headerLen = 4_pI64 * (3_pI64 + nBlock)
temp = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(:base64_nChar(headerLen)))),pI64) temp = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(:base64_nChar(headerLen)))),pI64)
elseif(headerType == 'UInt64') then elseif (headerType == 'UInt64') then
temp = int(prec_bytesToC_INT64_T(base64_to_bytes(base64_str(:base64_nChar(8_pI64)))),pI64) temp = int(prec_bytesToC_INT64_T(base64_to_bytes(base64_str(:base64_nChar(8_pI64)))),pI64)
nBlock = int(temp(1),pI64) nBlock = int(temp(1),pI64)
headerLen = 8_pI64 * (3_pI64 + nBlock) headerLen = 8_pI64 * (3_pI64 + nBlock)
@ -424,13 +424,13 @@ subroutine readVTI(grid,geomSize,origin,material, &
allocate(bytes(0)) allocate(bytes(0))
s=0_pI64 s=0_pI64
if (headerType == 'UInt32') then if (headerType == 'UInt32') then
do while(s+base64_nChar(4_pI64)<(len(base64_str,pI64))) do while(s+base64_nChar(4_pI64)<(len(base64_str,pI64)))
nByte = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(4_pI64)))),pI64) nByte = int(prec_bytesToC_INT32_T(base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(4_pI64)))),pI64)
bytes = [bytes,base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(4_pI64+nByte(1))),5_pI64)] bytes = [bytes,base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(4_pI64+nByte(1))),5_pI64)]
s = s + base64_nChar(4_pI64+nByte(1)) s = s + base64_nChar(4_pI64+nByte(1))
enddo enddo
elseif(headerType == 'UInt64') then elseif (headerType == 'UInt64') then
do while(s+base64_nChar(8_pI64)<(len(base64_str,pI64))) do while(s+base64_nChar(8_pI64)<(len(base64_str,pI64)))
nByte = int(prec_bytesToC_INT64_T(base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(8_pI64)))),pI64) nByte = int(prec_bytesToC_INT64_T(base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(8_pI64)))),pI64)
bytes = [bytes,base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(8_pI64+nByte(1))),9_pI64)] bytes = [bytes,base64_to_bytes(base64_str(s+1_pI64:s+base64_nChar(8_pI64+nByte(1))),9_pI64)]
@ -455,11 +455,11 @@ subroutine readVTI(grid,geomSize,origin,material, &
#endif #endif
s = index(line," "//key,back=.true.) s = index(line," "//key,back=.true.)
if(s==0) then if (s==0) then
getXMLValue = '' getXMLValue = ''
else else
e = s + 1 + scan(line(s+1:),"'"//'"') e = s + 1 + scan(line(s+1:),"'"//'"')
if(scan(line(s:e-2),'=') == 0) then if (scan(line(s:e-2),'=') == 0) then
getXMLValue = '' getXMLValue = ''
else else
s = e s = e