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DAMASK_EICMD
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fixed bug 'the table' instead of 'table'

This commit is contained in:
Tias Maiti 2014-09-19 15:24:59 +00:00
parent d07a098724
commit 14530b0a76
1 changed files with 13 additions and 13 deletions
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26
processing/pre/seeds_fromGeom.py
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@ -91,8 +91,8 @@ for file in files:
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n') if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n') else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
theTable = damask.ASCIItable(file['input'],file['output'],labels = False,buffered = False) table = damask.ASCIItable(file['input'],file['output'],labels = False,buffered = False)
theTable.head_read() table.head_read()
#--- interpret header ---------------------------------------------------------------------------- #--- interpret header ----------------------------------------------------------------------------
info = { info = {
@ -109,7 +109,7 @@ for file in files:
} }
extra_header = [] extra_header = []
for header in theTable.info: for header in table.info:
headitems = map(str.lower,header.split()) headitems = map(str.lower,header.split())
if len(headitems) == 0: continue # skip blank lines if len(headitems) == 0: continue # skip blank lines
for synonym,alternatives in synonyms.iteritems(): for synonym,alternatives in synonyms.iteritems():
@ -142,8 +142,8 @@ for file in files:
#--- read data ------------------------------------------------------------------------------------ #--- read data ------------------------------------------------------------------------------------
microstructure = numpy.zeros(info['grid'].prod(),'i') # initialize as flat array microstructure = numpy.zeros(info['grid'].prod(),'i') # initialize as flat array
i = 0 i = 0
while theTable.data_read(): while table.data_read():
items = theTable.data items = table.data
if len(items) > 2: if len(items) > 2:
if items[1].lower() == 'of': items = [int(items[2])]*int(items[0]) if items[1].lower() == 'of': items = [int(items[2])]*int(items[0])
elif items[1].lower() == 'to': items = xrange(int(items[0]),1+int(items[2])) elif items[1].lower() == 'to': items = xrange(int(items[0]),1+int(items[2]))
@ -157,18 +157,18 @@ for file in files:
# ------------------------------------------ assemble header --------------------------------------- # ------------------------------------------ assemble header ---------------------------------------
theTable.info = [ table.info = [
scriptID, scriptID,
"grid\ta %i\tb %i\tc %i"%(info['grid'][0],info['grid'][1],info['grid'][2],), "grid\ta %i\tb %i\tc %i"%(info['grid'][0],info['grid'][1],info['grid'][2],),
"size\tx %i\ty %i\tz %i"%(info['size'][0],info['size'][1],info['size'][2],), "size\tx %i\ty %i\tz %i"%(info['size'][0],info['size'][1],info['size'][2],),
"origin\tx %i\ty %i\tz %i"%(info['origin'][0],info['origin'][1],info['origin'][2],), "origin\tx %i\ty %i\tz %i"%(info['origin'][0],info['origin'][1],info['origin'][2],),
] ]
theTable.labels_clear() table.labels_clear()
theTable.labels_append(['x','y','z','microstructure']) # implicitly switching label processing/writing on table.labels_append(['x','y','z','microstructure']) # implicitly switching label processing/writing on
theTable.head_write() table.head_write()
#--- filtering of grain voxels ------------------------------------------------------------------------------------ #--- filtering of grain voxels ------------------------------------------------------------------------------------
theTable.data_clear() table.data_clear()
i = 0 i = 0
outputDead = False outputDead = False
coord = numpy.zeros(3,'d') coord = numpy.zeros(3,'d')
@ -178,8 +178,8 @@ for file in files:
if (options.whitelist == [] and options.blacklist == []) or \ if (options.whitelist == [] and options.blacklist == []) or \
(options.whitelist != [] and microstructure[i] in options.whitelist) or \ (options.whitelist != [] and microstructure[i] in options.whitelist) or \
(options.blacklist != [] and microstructure[i] not in options.blacklist): (options.blacklist != [] and microstructure[i] not in options.blacklist):
theTable.data = list((coord+0.5)/info['grid'])+[microstructure[i]] table.data = list((coord+0.5)/info['grid'])+[microstructure[i]]
outputDead = not theTable.data_write() outputDead = not table.data_write()
i += 1 i += 1
if outputDead: break if outputDead: break
if outputDead: break if outputDead: break
@ -187,7 +187,7 @@ for file in files:
# ------------------------------------------ output result --------------------------------------- # ------------------------------------------ output result ---------------------------------------
outputDead or theTable.output_flush() # just in case of buffered ASCII table outputDead or table.output_flush() # just in case of buffered ASCII table
table.input_close() # close input ASCII table table.input_close() # close input ASCII table
if file['name'] != 'STDIN': if file['name'] != 'STDIN':