223031012
/
DAMASK_EICMD
mirror of https://github.com/achalhp/DAMASK_EICMD.git
1
0
Fork 0
Code Issues Projects Releases Wiki Activity

fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input. 

changed file handle setup to allow for large lists of input files.
This commit is contained in:
Philip Eisenlohr 2014-10-23 21:23:10 +00:00
parent dfd5be70b5
commit 13ba71a314
1 changed files with 14 additions and 16 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

26
processing/post/filterTable.py
View File

@ -34,19 +34,16 @@ parser.set_defaults(condition = '')
(options,filenames) = parser.parse_args()
# ------------------------------------------ setup file handles ------------------------------------
files = []
if filenames == []:
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
else:
for name in filenames:
if os.path.exists(name):
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
#--- loop over input files -------------------------------------------------------------------------
for file in files:
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
for name in filenames:
if name != 'STDIN':
file = {'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr}
file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else:
if not os.path.exists(name): continue
file = {'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr}
file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
table.head_read() # read ASCII header info
@ -57,6 +54,7 @@ for file in files:
}
labels = []
positions = []
for position,label in enumerate(table.labels):
if (options.whitelist == [] or any([fnmatch.fnmatch(label,needle) for needle in options.whitelist])) \
and (options.blacklist == [] or not any([fnmatch.fnmatch(label,needle) for needle in options.blacklist])): # a label to keep?
@ -65,7 +63,7 @@ for file in files:
interpolator = []
for position,operand in enumerate(set(re.findall(r'#(([s]#)?(.+?))#',options.condition))): # find three groups
options.condition = options.condition.replace('#'+operand[0]+'#',
condition = options.condition.replace('#'+operand[0]+'#',
{ '': '{%i}'%position,
's#':'"{%i}"'%position}[operand[1]])
if operand[2] in specials: # special label ?
@ -78,7 +76,7 @@ for file in files:
except:
parser.error('column %s not found...\n'%operand[2])
evaluator = "'" + options.condition + "'.format(" + ','.join(interpolator) + ")"
evaluator = "'" + condition + "'.format(" + ','.join(interpolator) + ")"
# ------------------------------------------ assemble header ---------------------------------------
table.labels = labels # update with new label set
@ -88,7 +86,7 @@ for file in files:
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
specials['_row_'] += 1 # count row
if options.condition == '' or eval(eval(evaluator)): # valid row ?
if condition == '' or eval(eval(evaluator)): # valid row ?
table.data = [table.data[position] for position in positions] # retain filtered columns
outputAlive = table.data_write() # output processed line