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DAMASK_EICMD
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This commit is contained in:
Martin Diehl 2023-12-04 22:25:28 +01:00
parent ffd3cfe951
commit 1245ec7d94
1 changed files with 15 additions and 25 deletions
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40
python/damask/_result.py
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@ -1940,7 +1940,7 @@ class Result:
The DREAM3D file is based on HDF5 file format. The DREAM3D file is based on HDF5 file format.
Without any regridding. Without any regridding.
Considers the original grid from DAMASK. Considers the original grid from DAMASK.
Needs orientation data, O, present in the file. Needs orientation data, 'O', present in the file.
Parameters Parameters
---------- ----------
@ -1999,25 +1999,19 @@ class Result:
o.create_group(g) o.create_group(g)
data_container = create_and_open(o,'DataContainers/SyntheticVolumeDataContainer') data_container = create_and_open(o,'DataContainers/SyntheticVolumeDataContainer')
cell = create_and_open(data_container,'CellData') cell = create_and_open(data_container,'CellData')
cell['Phases'] = np.reshape(phase_ID_array,tuple(np.flip(self.cells))+(1,))
cell['EulerAngles'] = cell_orientation.reshape(tuple(np.flip(self.cells))+(3,))
add_attribute(cell,'AttributeMatrixType',np.array([3],np.uint32)) add_attribute(cell,'AttributeMatrixType',np.array([3],np.uint32))
add_attribute(cell,'TupleDimensions', np.array(self.cells,np.uint64)) add_attribute(cell,'TupleDimensions', np.array(self.cells,np.uint64))
# Common Attributes for groups in CellData cell['Phases'] = np.reshape(phase_ID_array,tuple(np.flip(self.cells))+(1,))
cell['EulerAngles'] = cell_orientation.reshape(tuple(np.flip(self.cells))+(3,))
for dataset in ['Phases','EulerAngles']: for dataset in ['Phases','EulerAngles']:
add_attribute(cell[dataset],'DataArrayVersion',np.array([2],np.int32)) add_attribute(cell[dataset],'DataArrayVersion',np.array([2],np.int32))
add_attribute(cell[dataset],'Tuple Axis Dimensions','x={},y={},z={}'.format(*np.array(self.cells))) add_attribute(cell[dataset],'Tuple Axis Dimensions','x={},y={},z={}'.format(*np.array(self.cells)))
add_attribute(cell[dataset],'TupleDimensions', np.array(self.cells,np.uint64)) add_attribute(cell[dataset],'TupleDimensions', np.array(self.cells,np.uint64))
# phase attributes
add_attribute(cell['Phases'], 'ComponentDimensions', np.array([1],np.uint64)) add_attribute(cell['Phases'], 'ComponentDimensions', np.array([1],np.uint64))
add_attribute(cell['Phases'], 'ObjectType', 'DataArray<int32_t>') add_attribute(cell['Phases'], 'ObjectType', 'DataArray<int32_t>')
# Eulers attributes
add_attribute(cell['EulerAngles'], 'ComponentDimensions', np.array([3],np.uint64)) add_attribute(cell['EulerAngles'], 'ComponentDimensions', np.array([3],np.uint64))
add_attribute(cell['EulerAngles'], 'ObjectType', 'DataArray<float>') add_attribute(cell['EulerAngles'], 'ObjectType', 'DataArray<float>')
@ -2046,18 +2040,15 @@ class Result:
cell_ensemble.attrs['TupleDimensions'] = np.array([len(self.phases) + 1], np.uint64) cell_ensemble.attrs['TupleDimensions'] = np.array([len(self.phases) + 1], np.uint64)
# Attributes for data in Ensemble matrix # Attributes for data in Ensemble matrix
for group in ['CrystalStructures','PhaseTypes']: for group in ['CrystalStructures','PhaseTypes','PhaseName']:
add_attribute(cell_ensemble[group], 'ComponentDimensions', np.array([1],np.uint64)) add_attribute(cell_ensemble[group], 'ComponentDimensions', np.array([1],np.uint64))
add_attribute(cell_ensemble[group], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}') add_attribute(cell_ensemble[group], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}')
add_attribute(cell_ensemble[group], 'DataArrayVersion', np.array([2],np.int32)) add_attribute(cell_ensemble[group], 'DataArrayVersion', np.array([2],np.int32))
add_attribute(cell_ensemble[group], 'ObjectType', 'DataArray<uint32_t>') add_attribute(cell_ensemble[group], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64))
add_attribute(cell_ensemble[group], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64))
add_attribute(cell_ensemble['PhaseName'], 'ComponentDimensions', np.array([1],np.uint64)) for group in ['CrystalStructures','PhaseTypes']:
add_attribute(cell_ensemble['PhaseName'], 'Tuple Axis Dimensions', f'x={len(self.phases)+1}') add_attribute(cell_ensemble[group], 'ObjectType', 'DataArray<uint32_t>')
add_attribute(cell_ensemble['PhaseName'], 'DataArrayVersion', np.array([2],np.int32)) add_attribute(cell_ensemble['PhaseName'], 'ObjectType', 'StringDataArray')
add_attribute(cell_ensemble['PhaseName'], 'ObjectType', 'StringDataArray')
add_attribute(cell_ensemble['PhaseName'], 'TupleDimensions', np.array([len(self.phases) + 1],np.uint64))
# Create geometry info # Create geometry info
geom = create_and_open(data_container,'_SIMPL_GEOMETRY') geom = create_and_open(data_container,'_SIMPL_GEOMETRY')
@ -2066,11 +2057,10 @@ class Result:
geom['ORIGIN'] = np.float32(np.zeros(3)) geom['ORIGIN'] = np.float32(np.zeros(3))
geom['SPACING'] = np.float32(dx) geom['SPACING'] = np.float32(dx)
add_attribute(geom, 'GeometryName', 'ImageGeometry') names = ['GeometryName', 'GeometryTypeName','GeometryType','SpatialDimensionality','UnitDimensionality']
add_attribute(geom, 'GeometryTypeName', 'ImageGeometry') values = ['ImageGeometry','ImageGeometry',np.array([0],np.uint32),np.array([3],np.uint32),np.array([3],np.uint32)]
add_attribute(geom, 'GeometryType', np.array([0],np.uint32)) for name,value in zip(names,values):
add_attribute(geom, 'SpatialDimensionality', np.array([3],np.uint32)) add_attribute(geom,name,value)
add_attribute(geom, 'UnitDimensionality', np.array([3],np.uint32))
def export_DADF5(self, def export_DADF5(self,