adjusting to PETSc 3.9.x
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src/FEM_mech.f90
286
src/FEM_mech.f90
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@ -5,6 +5,10 @@
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!> @brief FEM PETSc solver
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!--------------------------------------------------------------------------------------------------
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module FEM_mech
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#include <petsc/finclude/petsc.h>
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use PETScdmda
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use PETScsnes
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use prec, only: &
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pInt, &
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pReal
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@ -23,7 +27,6 @@ module FEM_mech
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implicit none
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private
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#include <petsc/finclude/petsc.h>
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!--------------------------------------------------------------------------------------------------
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! derived types
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@ -40,7 +43,7 @@ module FEM_mech
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SNES, private :: mech_snes
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Vec, private :: solution, solution_rate, solution_local
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PetscInt, private :: dimPlex, cellDof, nQuadrature, nBasis
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PetscReal, allocatable, target, private :: qPoints(:), qWeights(:)
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PetscReal, allocatable, target,dimension(:), private :: qPoints, qWeights
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MatNullSpace, private :: matnull
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!--------------------------------------------------------------------------------------------------
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@ -55,32 +58,11 @@ module FEM_mech
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FEM_mech_init, &
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FEM_mech_solution ,&
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FEM_mech_forward, &
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FEM_mech_output, &
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FEM_mech_destroy
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external :: &
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MPI_abort, &
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MPI_Allreduce, &
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VecCopy, &
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VecSet, &
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VecISSet, &
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VecScale, &
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VecWAXPY, &
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VecAXPY, &
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VecGetSize, &
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VecAssemblyBegin, &
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VecAssemblyEnd, &
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VecView, &
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VecDestroy, &
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MatSetOption, &
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MatSetLocalToGlobalMapping, &
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MatSetNearNullSpace, &
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MatZeroEntries, &
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MatZeroRowsColumnsLocalIS, &
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MatAssemblyBegin, &
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MatAssemblyEnd, &
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MatScale, &
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MatNullSpaceCreateRigidBody, &
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PetscQuadratureCreate, &
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PetscFECreateDefault, &
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PetscFESetQuadrature, &
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@ -92,39 +74,14 @@ module FEM_mech
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PetscDSGetTotalDimension, &
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PetscDSGetDiscretization, &
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PetscDualSpaceGetFunctional, &
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DMClone, &
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DMCreateGlobalVector, &
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DMGetDS, &
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DMGetDimension, &
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DMGetDefaultSection, &
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DMGetDefaultGlobalSection, &
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DMGetLocalToGlobalMapping, &
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DMGetLocalVector, &
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DMGetLabelSize, &
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DMPlexCopyCoordinates, &
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DMPlexGetHeightStratum, &
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DMPlexGetDepthStratum, &
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DMLocalToGlobalBegin, &
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DMLocalToGlobalEnd, &
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DMGlobalToLocalBegin, &
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DMGlobalToLocalEnd, &
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DMRestoreLocalVector, &
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DMSNESSetFunctionLocal, &
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DMSNESSetJacobianLocal, &
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SNESCreate, &
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SNESSetOptionsPrefix, &
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SNESSetDM, &
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SNESSetMaxLinearSolveFailures, &
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SNESSetConvergenceTest, &
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SNESSetTolerances, &
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SNESSetFromOptions, &
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SNESGetDM, &
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SNESGetConvergedReason, &
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SNESGetIterationNumber, &
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SNESSolve, &
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SNESDestroy, &
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PetscViewerHDF5PushGroup, &
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PetscViewerHDF5PopGroup, &
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PetscObjectSetName
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contains
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@ -178,11 +135,9 @@ subroutine FEM_mech_init(fieldBC)
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character(len=7) :: prefix = 'mechFE_'
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PetscErrorCode :: ierr
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if (worldrank == 0) then
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write(6,'(/,a)') ' <<<+- FEM_mech init -+>>>'
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write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
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write(6,'(/,a)') ' <<<+- FEM_mech init -+>>>'
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write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
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#include "compilation_info.f90"
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endif
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!--------------------------------------------------------------------------------------------------
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! Setup FEM mech mesh
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@ -248,13 +203,13 @@ subroutine FEM_mech_init(fieldBC)
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call ISRestoreIndicesF90(bcPoint,pBcPoint,ierr); CHKERRQ(ierr)
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call ISDestroy(bcPoint,ierr); CHKERRQ(ierr)
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else
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call ISCreateGeneral(PETSC_COMM_WORLD,0,0,PETSC_COPY_VALUES,bcPoints(numBC),ierr)
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call ISCreateGeneral(PETSC_COMM_WORLD,0,[0],PETSC_COPY_VALUES,bcPoints(numBC),ierr)
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CHKERRQ(ierr)
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endif
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endif
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enddo; enddo
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call DMPlexCreateSection(mech_mesh,dimPlex,1,pNumComp,pNumDof, &
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numBC,pBcField,pBcComps,pBcPoints,PETSC_NULL_OBJECT, &
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numBC,pBcField,pBcComps,pBcPoints,PETSC_NULL_VEC, &
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section,ierr)
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CHKERRQ(ierr)
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call DMSetDefaultSection(mech_mesh,section,ierr); CHKERRQ(ierr)
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@ -270,12 +225,12 @@ subroutine FEM_mech_init(fieldBC)
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call DMCreateGlobalVector(mech_mesh,solution ,ierr); CHKERRQ(ierr) !< locally owned displacement Dofs
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call DMCreateGlobalVector(mech_mesh,solution_rate ,ierr); CHKERRQ(ierr) !< locally owned velocity Dofs to guess solution at next load step
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call DMCreateLocalVector (mech_mesh,solution_local ,ierr); CHKERRQ(ierr) !< locally owned velocity Dofs to guess solution at next load step
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call DMSNESSetFunctionLocal(mech_mesh,FEM_mech_formResidual,PETSC_NULL_OBJECT,ierr) !< function to evaluate residual forces
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call DMSNESSetFunctionLocal(mech_mesh,FEM_mech_formResidual,PETSC_NULL_VEC,ierr) !< function to evaluate residual forces
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CHKERRQ(ierr)
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call DMSNESSetJacobianLocal(mech_mesh,FEM_mech_formJacobian,PETSC_NULL_OBJECT,ierr) !< function to evaluate stiffness matrix
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call DMSNESSetJacobianLocal(mech_mesh,FEM_mech_formJacobian,PETSC_NULL_VEC,ierr) !< function to evaluate stiffness matrix
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CHKERRQ(ierr)
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call SNESSetMaxLinearSolveFailures(mech_snes, huge(1), ierr); CHKERRQ(ierr) !< ignore linear solve failures
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call SNESSetConvergenceTest(mech_snes,FEM_mech_converged,PETSC_NULL_OBJECT,PETSC_NULL_FUNCTION,ierr)
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call SNESSetConvergenceTest(mech_snes,FEM_mech_converged,PETSC_NULL_VEC,PETSC_NULL_FUNCTION,ierr)
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CHKERRQ(ierr)
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call SNESSetTolerances(mech_snes,1.0,0.0,0.0,itmax,itmax,ierr)
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CHKERRQ(ierr)
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@ -357,7 +312,7 @@ type(tSolutionState) function FEM_mech_solution( &
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params%timeincOld = timeinc_old
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params%fieldBC = fieldBC
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call SNESSolve(mech_snes,PETSC_NULL_OBJECT,solution,ierr); CHKERRQ(ierr) ! solve mech_snes based on solution guess (result in solution)
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call SNESSolve(mech_snes,PETSC_NULL_VEC,solution,ierr); CHKERRQ(ierr) ! solve mech_snes based on solution guess (result in solution)
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call SNESGetConvergedReason(mech_snes,reason,ierr); CHKERRQ(ierr) ! solution converged?
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terminallyIll = .false.
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@ -370,10 +325,8 @@ type(tSolutionState) function FEM_mech_solution( &
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CHKERRQ(ierr)
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endif
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if (worldrank == 0) then
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write(6,'(/,a)') ' ==========================================================================='
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flush(6)
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endif
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write(6,'(/,a)') ' ==========================================================================='
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flush(6)
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end function FEM_mech_solution
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@ -765,215 +718,6 @@ subroutine FEM_mech_converged(snes_local,PETScIter,xnorm,snorm,fnorm,reason,dumm
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end subroutine FEM_mech_converged
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!--------------------------------------------------------------------------------------------------
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!> @brief output routine
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!--------------------------------------------------------------------------------------------------
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subroutine FEM_mech_output(inc,fieldBC)
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use material, only: &
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material_Nhomogenization, &
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material_Ncrystallite, &
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material_Nphase, &
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homogenization_maxNgrains, &
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homogenization_name, &
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crystallite_name, &
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phase_name
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use homogenization, only: &
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homogOutput, &
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crystalliteOutput, &
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phaseOutput
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use numerics, only: &
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integrationOrder
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use FEM_utilities, only: &
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resUnit, &
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coordinatesVec, &
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homogenizationResultsVec, &
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crystalliteResultsVec, &
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phaseResultsVec
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implicit none
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integer(pInt), intent(in) :: inc
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type(tFieldBC),intent(in) :: fieldBC
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DM :: dm_local
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PetscDS :: prob
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Vec :: localVec
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PetscScalar, dimension(:), pointer :: x_scal, coordinates, results
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PetscSection :: section
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PetscReal, pointer :: basisField(:), basisFieldDer(:)
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PetscInt :: nodeStart, nodeEnd, node
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PetscInt :: faceStart, faceEnd, face
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PetscInt :: cellStart, cellEnd, cell
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PetscInt :: field, qPt, qOffset, fOffset, dim, gType, cSize
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PetscInt :: homog, cryst, grain, phase, res, resSize
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PetscErrorCode :: ierr
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character(len=1024) :: resultPartition, incPartition, homogPartition, &
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crystPartition, phasePartition, &
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grainStr
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integer(pInt) :: ctr
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write(incPartition,'(a11,i0)') '/Increment_',inc
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call PetscViewerHDF5PushGroup(resUnit, trim(incPartition), ierr); CHKERRQ(ierr)
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call SNESGetDM(mech_snes,dm_local,ierr); CHKERRQ(ierr) !< retrieve mesh info from mech_snes into dm_local
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call DMGetDS(dm_local,prob,ierr); CHKERRQ(ierr) !< retrieve discretization from mesh and store in prob
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call DMGetDefaultSection(dm_local,section,ierr); CHKERRQ(ierr) !< retrieve section (degrees of freedom)
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call DMGetLocalVector(dm_local,localVec,ierr); CHKERRQ(ierr) !< retrieve local vector
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call VecCopy(solution_local,localVec,ierr); CHKERRQ(ierr)
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call VecGetArrayF90(coordinatesVec, coordinates, ierr); CHKERRQ(ierr)
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ctr = 1_pInt
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select case (integrationOrder)
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case(1_pInt) !< first order quadrature
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call DMPlexGetDepthStratum(dm_local,0,nodeStart,nodeEnd,ierr); CHKERRQ(ierr) !< get index range of entities at dimension 0 (i.e., all nodes)
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do node = nodeStart, nodeEnd-1 !< loop over all nodes in mesh
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call DMPlexVecGetClosure(dm_local,section,localVec,node,x_scal,ierr) !< x_scal = localVec (i.e. solution) at node
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CHKERRQ(ierr)
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do dim = 1, dimPlex
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coordinates(ctr) = x_scal(dim); ctr = ctr + 1_pInt !< coordinates of node
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enddo
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call DMPlexVecRestoreClosure(dm_local,section,localVec,node,x_scal,ierr) !< disassociate x_scal pointer
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CHKERRQ(ierr)
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enddo
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case(2_pInt) !< second order quadrature
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call DMPlexGetHeightStratum(dm_local,0,cellStart,cellEnd,ierr) !< get index range of highest dimension object (i.e. cells of mesh) TODO 3D assumption!!
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CHKERRQ(ierr)
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do cell = cellStart, cellEnd-1 !< loop over all elements
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call DMPlexVecGetClosure(dm_local,section,localVec,cell,x_scal,ierr)
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CHKERRQ(ierr)
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do dim = 1, dimPlex
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coordinates(ctr) = sum(x_scal(dim:cellDof:dimPlex))/real(nBasis) !< coordinates of cell center
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ctr = ctr + 1_pInt
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enddo
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call DMPlexVecRestoreClosure(dm_local,section,localVec,cell,x_scal,ierr)
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CHKERRQ(ierr)
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enddo
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call DMPlexGetDepthStratum(dm_local,0,nodeStart,nodeEnd,ierr) !< get index range of entities at dimension 0 (i.e., all nodes)
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CHKERRQ(ierr)
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do node = nodeStart, nodeEnd-1 !< loop over all nodes
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call DMPlexVecGetClosure(dm_local,section,localVec,node,x_scal,ierr)
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CHKERRQ(ierr)
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do dim = 1, dimPlex
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coordinates(ctr) = x_scal(dim) !< coordinates of cell corners
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ctr = ctr + 1_pInt
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enddo
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call DMPlexVecRestoreClosure(dm_local,section,localVec,node,x_scal,ierr)
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CHKERRQ(ierr)
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enddo
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do gType = 1, dimPlex-1
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call DMPlexGetHeightStratum(dm_local,gType,faceStart,faceEnd,ierr) !< get index range of entities at dimension N-1 (i.e., all faces)
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CHKERRQ(ierr)
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do face = faceStart, faceEnd-1 !< loop over all elements
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call DMPlexVecGetClosure(dm_local,section,localVec,face,x_scal,ierr)
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CHKERRQ(ierr)
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cSize = size(x_scal)
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do dim = 1, dimPlex
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coordinates(ctr) = sum(x_scal(dim:cSize:dimPlex))/real(cSize/dimPlex) !< coordinates of edge/face centers TODO quadratic element assumption used here!
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ctr = ctr + 1_pInt
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enddo
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call DMPlexVecRestoreClosure(dm_local,section,localVec,face,x_scal,ierr)
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CHKERRQ(ierr)
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enddo
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enddo
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case default
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call DMPlexGetHeightStratum(dm_local,0,cellStart,cellEnd,ierr) !< get index range of elements (mesh cells)
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CHKERRQ(ierr)
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do cell = cellStart, cellEnd-1 !< loop over all elements
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call DMPlexVecGetClosure(dm_local, & !< mesh
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section, & !< distribution of DoF on mesh
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localVec, & !< overall solution vector (i.e. all DoFs)...
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cell, & !< ...at this cell
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x_scal, & !< store all DoFs of closure (faces, edges, nodes if present) into x_scal
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ierr) !< --> get coordinates of closure entities with DoFs
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CHKERRQ(ierr)
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qOffset = 0
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do qPt = 1, nQuadrature !< loop over each quad point in cell
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fOffset = 0
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do field = 0, dimPlex-1 !< loop over each solution field (e.g., x,y,z coordinates)
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call PetscDSGetTabulation(prob,field,basisField,basisFieldDer,ierr) !< retrieve shape function at each quadrature point for field
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CHKERRQ(ierr)
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coordinates(ctr) = real(sum(basisField(qOffset+1:qOffset+nBasis)* &
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x_scal(fOffset+1:fOffset+nBasis)), pReal) !< interpolate field value (in x_scal) to quad points
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ctr = ctr + 1_pInt
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fOffset = fOffset + nBasis !< wind forward by one field
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enddo
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qOffset = qOffset + nBasis !< wind forward by one quad point
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enddo
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call DMPlexVecRestoreClosure(dm_local,section,localVec,cell,x_scal,ierr)
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CHKERRQ(ierr)
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enddo
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end select
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call VecRestoreArrayF90(coordinatesVec, coordinates, ierr); CHKERRQ(ierr)
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call VecAssemblyBegin(coordinatesVec, ierr); CHKERRQ(ierr)
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call VecAssemblyEnd (coordinatesVec, ierr); CHKERRQ(ierr)
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call VecView(coordinatesVec, resUnit, ierr); CHKERRQ(ierr)
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call DMRestoreLocalVector(dm_local,localVec,ierr); CHKERRQ(ierr)
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do homog = 1, material_Nhomogenization
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call VecGetSize(homogenizationResultsVec(homog),resSize,ierr)
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if (resSize > 0) then
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homogPartition = trim(incPartition)//'/Homog_'//trim(homogenization_name(homog))
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call PetscViewerHDF5PushGroup(resUnit, homogPartition, ierr)
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CHKERRQ(ierr)
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do res = 1, homogOutput(homog)%sizeResults
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write(resultPartition,'(a12,i0)') 'homogResult_',res
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call PetscObjectSetName(homogenizationResultsVec(homog),trim(resultPartition),ierr)
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CHKERRQ(ierr)
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call VecGetArrayF90(homogenizationResultsVec(homog),results,ierr);CHKERRQ(ierr)
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results = homogOutput(homog)%output(res,:)
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call VecRestoreArrayF90(homogenizationResultsVec(homog), results, ierr)
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CHKERRQ(ierr)
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call VecAssemblyBegin(homogenizationResultsVec(homog), ierr); CHKERRQ(ierr)
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call VecAssemblyEnd (homogenizationResultsVec(homog), ierr); CHKERRQ(ierr)
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call VecView(homogenizationResultsVec(homog), resUnit, ierr); CHKERRQ(ierr)
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enddo
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call PetscViewerHDF5PopGroup(resUnit, ierr); CHKERRQ(ierr)
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endif
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enddo
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do cryst = 1, material_Ncrystallite; do grain = 1, homogenization_maxNgrains
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call VecGetSize(crystalliteResultsVec(cryst,grain),resSize,ierr)
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if (resSize > 0) then
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write(grainStr,'(a,i0)') 'Grain',grain
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crystPartition = trim(incPartition)//'/Crystallite_'//trim(crystallite_name(cryst))//'_'//trim(grainStr)
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call PetscViewerHDF5PushGroup(resUnit, crystPartition, ierr)
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CHKERRQ(ierr)
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do res = 1, crystalliteOutput(cryst,grain)%sizeResults
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write(resultPartition,'(a18,i0)') 'crystalliteResult_',res
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call PetscObjectSetName(crystalliteResultsVec(cryst,grain),trim(resultPartition),ierr)
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CHKERRQ(ierr)
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call VecGetArrayF90(crystalliteResultsVec(cryst,grain),results,ierr)
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CHKERRQ(ierr)
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results = crystalliteOutput(cryst,grain)%output(res,:)
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call VecRestoreArrayF90(crystalliteResultsVec(cryst,grain), results, ierr)
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CHKERRQ(ierr)
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call VecAssemblyBegin(crystalliteResultsVec(cryst,grain), ierr);CHKERRQ(ierr)
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call VecAssemblyEnd (crystalliteResultsVec(cryst,grain), ierr);CHKERRQ(ierr)
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call VecView(crystalliteResultsVec(cryst,grain), resUnit, ierr);CHKERRQ(ierr)
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enddo
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call PetscViewerHDF5PopGroup(resUnit, ierr); CHKERRQ(ierr)
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endif
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enddo; enddo
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do phase = 1, material_Nphase; do grain = 1, homogenization_maxNgrains
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call VecGetSize(phaseResultsVec(phase,grain),resSize,ierr)
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if (resSize > 0) then
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write(grainStr,'(a,i0)') 'Grain',grain
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phasePartition = trim(incPartition)//'/Phase_'//trim(phase_name(phase))//'_'//trim(grainStr)
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call PetscViewerHDF5PushGroup(resUnit, phasePartition, ierr)
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CHKERRQ(ierr)
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do res = 1, phaseOutput(phase,grain)%sizeResults
|
||||
write(resultPartition,'(a12,i0)') 'phaseResult_',res
|
||||
call PetscObjectSetName(phaseResultsVec(phase,grain),trim(resultPartition),ierr)
|
||||
CHKERRQ(ierr)
|
||||
call VecGetArrayF90(phaseResultsVec(phase,grain),results,ierr);CHKERRQ(ierr)
|
||||
results = phaseOutput(phase,grain)%output(res,:)
|
||||
call VecRestoreArrayF90(phaseResultsVec(phase,grain), results, ierr)
|
||||
CHKERRQ(ierr)
|
||||
call VecAssemblyBegin(phaseResultsVec(phase,grain), ierr); CHKERRQ(ierr)
|
||||
call VecAssemblyEnd (phaseResultsVec(phase,grain), ierr); CHKERRQ(ierr)
|
||||
call VecView(phaseResultsVec(phase,grain), resUnit, ierr); CHKERRQ(ierr)
|
||||
enddo
|
||||
call PetscViewerHDF5PopGroup(resUnit, ierr); CHKERRQ(ierr)
|
||||
endif
|
||||
enddo; enddo
|
||||
|
||||
end subroutine FEM_mech_output
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!> @brief destroy routine
|
||||
|
|
|
@ -3,8 +3,7 @@
|
|||
!> @brief Utilities used by the FEM solver
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
module FEM_utilities
|
||||
#include <petsc/finclude/petscis.h>
|
||||
#include <petsc/finclude/petscdmda.h>
|
||||
#include <petsc/finclude/petsc.h>
|
||||
use prec, only: pReal, pInt
|
||||
|
||||
use PETScdmda
|
||||
|
@ -12,7 +11,6 @@ use PETScis
|
|||
|
||||
implicit none
|
||||
private
|
||||
#include <petsc/finclude/petsc.h>
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
!
|
||||
logical, public :: cutBack = .false. !< cut back of BVP solver in case convergence is not achieved or a material point is terminally ill
|
||||
|
@ -187,14 +185,9 @@ subroutine utilities_init()
|
|||
use mesh, only: &
|
||||
mesh_NcpElemsGlobal, &
|
||||
mesh_maxNips, &
|
||||
geomMesh, &
|
||||
mesh_element
|
||||
geomMesh
|
||||
use material, only: &
|
||||
homogenization_Ngrains, &
|
||||
homogenization_maxNgrains, &
|
||||
material_homog, &
|
||||
material_phase, &
|
||||
microstructure_crystallite
|
||||
material_homog
|
||||
|
||||
implicit none
|
||||
|
||||
|
@ -204,17 +197,13 @@ subroutine utilities_init()
|
|||
PetscInt, dimension(:), pointer :: points
|
||||
PetscInt, allocatable :: nEntities(:), nOutputCells(:), nOutputNodes(:), mappingCells(:)
|
||||
PetscInt :: cellStart, cellEnd, cell, ip, dim, ctr, qPt
|
||||
PetscInt :: homog, cryst, grain, phase
|
||||
PetscInt, allocatable :: connectivity(:,:)
|
||||
Vec :: connectivityVec
|
||||
PetscScalar, dimension(:), pointer :: results
|
||||
PetscErrorCode :: ierr
|
||||
|
||||
if (worldrank == 0) then
|
||||
write(6,'(/,a)') ' <<<+- DAMASK_FEM_utilities init -+>>>'
|
||||
write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
|
||||
write(6,'(/,a)') ' <<<+- DAMASK_FEM_utilities init -+>>>'
|
||||
write(6,'(a15,a)') ' Current time: ',IO_timeStamp()
|
||||
#include "compilation_info.f90"
|
||||
endif
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! set debugging parameters
|
||||
|
@ -738,8 +727,8 @@ end subroutine utilities_indexActiveSet
|
|||
!> @brief cleans up
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
subroutine utilities_destroy()
|
||||
use material, only: &
|
||||
homogenization_Ngrains
|
||||
!use material, only: &
|
||||
! homogenization_Ngrains
|
||||
|
||||
!implicit none
|
||||
!PetscInt :: homog, cryst, grain, phase
|
||||
|
|
Loading…
Reference in New Issue