Merge commit 'v2.0.1-943-g84ec8bf'
This commit is contained in:
commit
023fdda21f
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@ -451,9 +451,9 @@ def mapIncremental(label, mapping, N, base, new):
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# -----------------------------
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# -----------------------------
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def OpenPostfile(name,type,nodal = False):
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def OpenPostfile(name,type,nodal = False):
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"""Open postfile with extrapolation mode 'translate'"""
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"""Open postfile with extrapolation mode 'translate'"""
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p = {\
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p = {
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'spectral': MPIEspectral_result,\
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'spectral': MPIEspectral_result,
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'marc': post_open,\
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'marc': post_open,
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}[type](name)
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}[type](name)
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p.extrapolation({True:'linear',False:'translate'}[nodal])
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p.extrapolation({True:'linear',False:'translate'}[nodal])
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p.moveto(1)
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p.moveto(1)
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@ -512,19 +512,19 @@ def ParsePostfile(p,filename, outputFormat):
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needs "outputFormat" for mapping of output names to postfile output indices
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needs "outputFormat" for mapping of output names to postfile output indices
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"""
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"""
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stat = { \
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stat = {
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'IndexOfLabel': {}, \
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'IndexOfLabel': {},
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'Title': p.title(), \
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'Title': p.title(),
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'Extrapolation': p.extrapolate, \
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'Extrapolation': p.extrapolate,
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'NumberOfIncrements': p.increments(), \
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'NumberOfIncrements': p.increments(),
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'NumberOfNodes': p.nodes(), \
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'NumberOfNodes': p.nodes(),
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'NumberOfNodalScalars': p.node_scalars(), \
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'NumberOfNodalScalars': p.node_scalars(),
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'LabelOfNodalScalar': [None]*p.node_scalars() , \
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'LabelOfNodalScalar': [None]*p.node_scalars(),
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'NumberOfElements': p.elements(), \
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'NumberOfElements': p.elements(),
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'NumberOfElementalScalars': p.element_scalars(), \
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'NumberOfElementalScalars': p.element_scalars(),
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'LabelOfElementalScalar': [None]*p.element_scalars() , \
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'LabelOfElementalScalar': [None]*p.element_scalars(),
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'NumberOfElementalTensors': p.element_tensors(), \
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'NumberOfElementalTensors': p.element_tensors(),
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'LabelOfElementalTensor': [None]*p.element_tensors(), \
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'LabelOfElementalTensor': [None]*p.element_tensors(),
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}
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}
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# --- find labels
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# --- find labels
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@ -671,6 +671,9 @@ parser.add_option('-m','--map', dest='func',
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parser.add_option('-p','--type', dest='filetype',
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parser.add_option('-p','--type', dest='filetype',
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metavar = 'string',
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metavar = 'string',
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help = 'type of result file [auto]')
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help = 'type of result file [auto]')
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parser.add_option('-q','--quiet', dest='verbose',
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action = 'store_false',
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help = 'suppress verbose output')
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group_material = OptionGroup(parser,'Material identifier')
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group_material = OptionGroup(parser,'Material identifier')
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@ -711,24 +714,26 @@ parser.add_option_group(group_material)
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parser.add_option_group(group_general)
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parser.add_option_group(group_general)
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parser.add_option_group(group_special)
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parser.add_option_group(group_special)
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parser.set_defaults(info = False)
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parser.set_defaults(info = False,
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parser.set_defaults(legacy = False)
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verbose = True,
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parser.set_defaults(nodal = False)
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legacy = False,
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parser.set_defaults(prefix = '')
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nodal = False,
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parser.set_defaults(suffix = '')
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prefix = '',
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parser.set_defaults(dir = 'postProc')
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suffix = '',
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parser.set_defaults(filetype = None)
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dir = 'postProc',
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parser.set_defaults(func = 'avg')
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filetype = None,
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parser.set_defaults(homog = '1')
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func = 'avg',
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parser.set_defaults(cryst = '1')
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homog = '1',
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parser.set_defaults(phase = '1')
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cryst = '1',
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parser.set_defaults(filter = '')
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phase = '1',
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parser.set_defaults(sep = [])
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filter = '',
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parser.set_defaults(sort = [])
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sep = [],
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parser.set_defaults(inc = False)
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sort = [],
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parser.set_defaults(time = False)
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inc = False,
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parser.set_defaults(separateFiles = False)
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time = False,
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parser.set_defaults(getIncrements= False)
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separateFiles = False,
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getIncrements= False,
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)
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(options, files) = parser.parse_args()
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(options, files) = parser.parse_args()
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@ -797,8 +802,9 @@ options.sep.reverse()
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# --- start background messaging
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# --- start background messaging
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bg = damask.util.backgroundMessage()
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if options.verbose:
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bg.start()
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bg = damask.util.backgroundMessage()
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bg.start()
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# --- parse .output and .t16 files
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# --- parse .output and .t16 files
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@ -816,7 +822,7 @@ me = {
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'Constitutive': options.phase,
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'Constitutive': options.phase,
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}
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}
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bg.set_message('parsing .output files...')
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if options.verbose: bg.set_message('parsing .output files...')
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for what in me:
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for what in me:
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outputFormat[what] = ParseOutputFormat(filename, what, me[what])
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outputFormat[what] = ParseOutputFormat(filename, what, me[what])
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@ -824,9 +830,10 @@ for what in me:
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print("\nsection '{}' not found in <{}>".format(me[what], what))
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print("\nsection '{}' not found in <{}>".format(me[what], what))
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print('\n'.join(map(lambda x:' [%s]'%x, outputFormat[what]['specials']['brothers'])))
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print('\n'.join(map(lambda x:' [%s]'%x, outputFormat[what]['specials']['brothers'])))
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bg.set_message('opening result file...')
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if options.verbose: bg.set_message('opening result file...')
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p = OpenPostfile(filename+extension,options.filetype,options.nodal)
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p = OpenPostfile(filename+extension,options.filetype,options.nodal)
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bg.set_message('parsing result file...')
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if options.verbose: bg.set_message('parsing result file...')
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stat = ParsePostfile(p, filename, outputFormat)
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stat = ParsePostfile(p, filename, outputFormat)
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if options.filetype == 'marc':
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if options.filetype == 'marc':
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stat['NumberOfIncrements'] -= 1 # t16 contains one "virtual" increment (at 0)
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stat['NumberOfIncrements'] -= 1 # t16 contains one "virtual" increment (at 0)
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@ -870,8 +877,7 @@ if options.info:
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elementsOfNode = {}
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elementsOfNode = {}
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for e in range(stat['NumberOfElements']):
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for e in range(stat['NumberOfElements']):
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if e%1000 == 0:
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if options.verbose and e%1000 == 0: bg.set_message('connect elem %i...'%e)
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bg.set_message('connect elem %i...'%e)
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for n in map(p.node_sequence,p.element(e).items):
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for n in map(p.node_sequence,p.element(e).items):
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if n not in elementsOfNode:
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if n not in elementsOfNode:
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elementsOfNode[n] = [p.element_id(e)]
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elementsOfNode[n] = [p.element_id(e)]
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@ -893,8 +899,7 @@ memberCount = 0
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if options.nodalScalar:
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if options.nodalScalar:
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for n in range(stat['NumberOfNodes']):
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for n in range(stat['NumberOfNodes']):
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if n%1000 == 0:
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if options.verbose and n%1000 == 0: bg.set_message('scan node %i...'%n)
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bg.set_message('scan node %i...'%n)
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myNodeID = p.node_id(n)
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myNodeID = p.node_id(n)
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myNodeCoordinates = [p.node(n).x, p.node(n).y, p.node(n).z]
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myNodeCoordinates = [p.node(n).x, p.node(n).y, p.node(n).z]
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myElemID = 0
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myElemID = 0
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@ -928,8 +933,7 @@ if options.nodalScalar:
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else:
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else:
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for e in range(stat['NumberOfElements']):
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for e in range(stat['NumberOfElements']):
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if e%1000 == 0:
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if options.verbose and e%1000 == 0: bg.set_message('scan elem %i...'%e)
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bg.set_message('scan elem %i...'%e)
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myElemID = p.element_id(e)
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myElemID = p.element_id(e)
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myIpCoordinates = ipCoords(p.element(e).type, map(lambda node: [node.x, node.y, node.z],
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myIpCoordinates = ipCoords(p.element(e).type, map(lambda node: [node.x, node.y, node.z],
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map(p.node, map(p.node_sequence, p.element(e).items))))
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map(p.node, map(p.node_sequence, p.element(e).items))))
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@ -995,7 +999,7 @@ if 'none' not in map(str.lower, options.sort):
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theKeys.append('x[0][%i]'%where[criterium])
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theKeys.append('x[0][%i]'%where[criterium])
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sortKeys = eval('lambda x:(%s)'%(','.join(theKeys)))
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sortKeys = eval('lambda x:(%s)'%(','.join(theKeys)))
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bg.set_message('sorting groups...')
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if options.verbose: bg.set_message('sorting groups...')
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groups.sort(key = sortKeys) # in-place sorting to save mem
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groups.sort(key = sortKeys) # in-place sorting to save mem
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@ -1014,7 +1018,7 @@ standard = ['inc'] + \
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# --------------------------- loop over positions --------------------------------
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# --------------------------- loop over positions --------------------------------
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bg.set_message('getting map between positions and increments...')
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if options.verbose: bg.set_message('getting map between positions and increments...')
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incAtPosition = {}
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incAtPosition = {}
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positionOfInc = {}
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positionOfInc = {}
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@ -1075,7 +1079,7 @@ for incCount,position in enumerate(locations): # walk through locations
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member += 1
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member += 1
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if member%1000 == 0:
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if member%1000 == 0:
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time_delta = ((len(locations)*memberCount)/float(member+incCount*memberCount)-1.0)*(time.time()-time_start)
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time_delta = ((len(locations)*memberCount)/float(member+incCount*memberCount)-1.0)*(time.time()-time_start)
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bg.set_message('(%02i:%02i:%02i) processing point %i of %i from increment %i (position %i)...'
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if options.verbose: bg.set_message('(%02i:%02i:%02i) processing point %i of %i from increment %i (position %i)...'
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%(time_delta//3600,time_delta%3600//60,time_delta%60,member,memberCount,increments[incCount],position))
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%(time_delta//3600,time_delta%3600//60,time_delta%60,member,memberCount,increments[incCount],position))
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newby = [] # current member's data
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newby = [] # current member's data
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