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error stop better suited for internal errors 

error stop gives full stack trace, which is very helpful for debugging.
This commit is contained in:
Martin Diehl 2020-11-11 10:19:47 +01:00
parent 2923f639da
commit 018709bfcf
2 changed files with 235 additions and 195 deletions
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229
src/HDF5_utilities.f90
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@ -12,7 +12,6 @@ module HDF5_utilities
use prec use prec
use parallelization use parallelization
use IO
use rotations use rotations
implicit none implicit none
@ -93,15 +92,15 @@ subroutine HDF5_utilities_init
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
!initialize HDF5 library and check if integer and float type size match !initialize HDF5 library and check if integer and float type size match
call h5open_f(hdferr) call h5open_f(hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5open_f') if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr) call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)') if(hdferr < 0) error stop 'HDF5 error'
if (int(bit_size(0),SIZE_T)/=typeSize*8) & if (int(bit_size(0),SIZE_T)/=typeSize*8) &
error stop 'Default integer size does not match H5T_NATIVE_INTEGER' error stop 'Default integer size does not match H5T_NATIVE_INTEGER'
call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr) call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)') if(hdferr < 0) error stop 'HDF5 error'
if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) & if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) &
error stop 'pReal does not match H5T_NATIVE_DOUBLE' error stop 'pReal does not match H5T_NATIVE_DOUBLE'
@ -128,30 +127,30 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
endif endif
call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr) call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pcreate_f') if(hdferr < 0) error stop 'HDF5 error'
#ifdef PETSc #ifdef PETSc
if (present(parallel)) then; if (parallel) then if (present(parallel)) then; if (parallel) then
call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr) call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pset_fapl_mpio_f') if(hdferr < 0) error stop 'HDF5 error'
endif; endif endif; endif
#endif #endif
if (m == 'w') then if (m == 'w') then
call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id) call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fcreate_f (w)') if(hdferr < 0) error stop 'HDF5 error'
elseif(m == 'a') then elseif(m == 'a') then
call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id) call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (a)') if(hdferr < 0) error stop 'HDF5 error'
elseif(m == 'r') then elseif(m == 'r') then
call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id) call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (r)') if(hdferr < 0) error stop 'HDF5 error'
else else
call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f unknown access mode: '//trim(m)) error stop 'unknown access mode'
endif endif
call h5pclose_f(plist_id, hdferr) call h5pclose_f(plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pclose_f') if(hdferr < 0) error stop 'HDF5 error'
end function HDF5_openFile end function HDF5_openFile
@ -166,7 +165,7 @@ subroutine HDF5_closeFile(fileHandle)
integer :: hdferr integer :: hdferr
call h5fclose_f(fileHandle,hdferr) call h5fclose_f(fileHandle,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_closeFile: h5fclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_closeFile end subroutine HDF5_closeFile
@ -185,19 +184,19 @@ integer(HID_T) function HDF5_addGroup(fileHandle,groupName)
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! creating a property list for data access properties ! creating a property list for data access properties
call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr) call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pcreate_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! setting I/O mode to collective ! setting I/O mode to collective
#ifdef PETSc #ifdef PETSc
call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr) call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
#endif #endif
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! Create group ! Create group
call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id) call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
call h5pclose_f(aplist_id,hdferr) call h5pclose_f(aplist_id,hdferr)
@ -221,19 +220,19 @@ integer(HID_T) function HDF5_openGroup(fileHandle,groupName)
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! creating a property list for data access properties ! creating a property list for data access properties
call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr) call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pcreate_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! setting I/O mode to collective ! setting I/O mode to collective
#ifdef PETSc #ifdef PETSc
call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr) call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
#endif #endif
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! opening the group ! opening the group
call h5gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id) call h5gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5gopen_f ('//trim(groupName)//')') if(hdferr < 0) error stop 'HDF5 error'
call h5pclose_f(aplist_id,hdferr) call h5pclose_f(aplist_id,hdferr)
@ -250,7 +249,7 @@ subroutine HDF5_closeGroup(group_id)
integer :: hdferr integer :: hdferr
call h5gclose_f(group_id, hdferr) call h5gclose_f(group_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(group_id)) if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_closeGroup end subroutine HDF5_closeGroup
@ -273,11 +272,11 @@ logical function HDF5_objectExists(loc_id,path)
endif endif
call h5lexists_f(loc_id, p, HDF5_objectExists, hdferr) call h5lexists_f(loc_id, p, HDF5_objectExists, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if(HDF5_objectExists) then if(HDF5_objectExists) then
call h5oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr) call h5oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
end function HDF5_objectExists end function HDF5_objectExists
@ -309,25 +308,25 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
ptr(1) = c_loc(attrValue_) ptr(1) = c_loc(attrValue_)
call h5screate_f(H5S_SCALAR_F,space_id,hdferr) call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5screate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5tcopy_f(H5T_STRING, type_id, hdferr) call h5tcopy_f(H5T_STRING, type_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tcopy_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if (attrExists) then if (attrExists) then
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr) call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5adelete_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5acreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5awrite_f(attr_id, type_id, c_loc(ptr(1)), hdferr) call h5awrite_f(attr_id, type_id, c_loc(ptr(1)), hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5awrite_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(type_id,hdferr) call h5tclose_f(type_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(space_id,hdferr) call h5sclose_f(space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5sclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_addAttribute_str end subroutine HDF5_addAttribute_str
@ -354,21 +353,21 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
endif endif
call h5screate_f(H5S_SCALAR_F,space_id,hdferr) call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5screate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5aexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if (attrExists) then if (attrExists) then
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr) call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5adelete_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5acreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr) call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5awrite_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5tclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(space_id,hdferr) call h5sclose_f(space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5sclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_addAttribute_int end subroutine HDF5_addAttribute_int
@ -395,21 +394,21 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
endif endif
call h5screate_f(H5S_SCALAR_F,space_id,hdferr) call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5screate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5aexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if (attrExists) then if (attrExists) then
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr) call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5adelete_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5acreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr) call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5awrite_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5tclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(space_id,hdferr) call h5sclose_f(space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5sclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_addAttribute_real end subroutine HDF5_addAttribute_real
@ -439,21 +438,21 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
array_size = size(attrValue,kind=HSIZE_T) array_size = size(attrValue,kind=HSIZE_T)
call h5screate_simple_f(1, array_size, space_id, hdferr, array_size) call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if (attrExists) then if (attrExists) then
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr) call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr) call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(space_id,hdferr) call h5sclose_f(space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_addAttribute_int_array end subroutine HDF5_addAttribute_int_array
@ -483,21 +482,21 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
array_size = size(attrValue,kind=HSIZE_T) array_size = size(attrValue,kind=HSIZE_T)
call h5screate_simple_f(1, array_size, space_id, hdferr, array_size) call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr) call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
if (attrExists) then if (attrExists) then
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr) call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr) call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr) call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f') if(hdferr < 0) error stop 'HDF5 error'
call h5aclose_f(attr_id,hdferr) call h5aclose_f(attr_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(space_id,hdferr) call h5sclose_f(space_id,hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_addAttribute_real_array end subroutine HDF5_addAttribute_real_array
@ -513,13 +512,13 @@ subroutine HDF5_setLink(loc_id,target_name,link_name)
logical :: linkExists logical :: linkExists
call h5lexists_f(loc_id, link_name,linkExists, hdferr) call h5lexists_f(loc_id, link_name,linkExists, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lexists_soft_f ('//trim(link_name)//')') if(hdferr < 0) error stop 'HDF5 error'
if (linkExists) then if (linkExists) then
call h5ldelete_f(loc_id,link_name, hdferr) call h5ldelete_f(loc_id,link_name, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5ldelete_soft_f ('//trim(link_name)//')') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call h5lcreate_soft_f(target_name, loc_id, link_name, hdferr) call h5lcreate_soft_f(target_name, loc_id, link_name, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lcreate_soft_f ('//trim(target_name)//' '//trim(link_name)//')') if(hdferr < 0) error stop 'HDF5 error'
end subroutine HDF5_setLink end subroutine HDF5_setLink
@ -558,7 +557,7 @@ subroutine HDF5_read_real1(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real1: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -598,7 +597,7 @@ subroutine HDF5_read_real2(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real2: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -638,7 +637,7 @@ subroutine HDF5_read_real3(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real3: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -678,7 +677,7 @@ subroutine HDF5_read_real4(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real4: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -718,7 +717,7 @@ subroutine HDF5_read_real5(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real5: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -758,7 +757,7 @@ subroutine HDF5_read_real6(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real6: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -798,7 +797,7 @@ subroutine HDF5_read_real7(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real7: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -840,7 +839,7 @@ subroutine HDF5_read_int1(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int1: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -880,7 +879,7 @@ subroutine HDF5_read_int2(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int2: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -920,7 +919,7 @@ subroutine HDF5_read_int3(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int3: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -960,7 +959,7 @@ subroutine HDF5_read_int4(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int4: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -1000,7 +999,7 @@ subroutine HDF5_read_int5(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int5: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -1040,7 +1039,7 @@ subroutine HDF5_read_int6(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int6: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -1080,7 +1079,7 @@ subroutine HDF5_read_int7(loc_id,dataset,datasetName,parallel)
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,& call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id) file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int7: h5dread_f') if(hdferr < 0) error stop 'HDF5 error'
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id) call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
@ -1121,7 +1120,7 @@ subroutine HDF5_write_real1(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real1: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1162,7 +1161,7 @@ subroutine HDF5_write_real2(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real2: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1203,7 +1202,7 @@ subroutine HDF5_write_real3(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real3: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1244,7 +1243,7 @@ subroutine HDF5_write_real4(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real4: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1286,7 +1285,7 @@ subroutine HDF5_write_real5(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real5: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1327,7 +1326,7 @@ subroutine HDF5_write_real6(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real6: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1368,7 +1367,7 @@ subroutine HDF5_write_real7(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real7: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1410,7 +1409,7 @@ subroutine HDF5_write_int1(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int1: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1451,7 +1450,7 @@ subroutine HDF5_write_int2(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int2: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1492,7 +1491,7 @@ subroutine HDF5_write_int3(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int3: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1533,7 +1532,7 @@ subroutine HDF5_write_int4(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int4: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1574,7 +1573,7 @@ subroutine HDF5_write_int5(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int5: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1615,7 +1614,7 @@ subroutine HDF5_write_int6(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int6: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1656,7 +1655,7 @@ subroutine HDF5_write_int7(loc_id,dataset,datasetName,parallel)
if (product(totalShape) /= 0) then if (product(totalShape) /= 0) then
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int7: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1732,7 +1731,7 @@ subroutine HDF5_write_rotation(loc_id,dataset,datasetName,parallel)
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
call h5dwrite_f(dset_id, z_id,dataset_asArray(4,:),int(totalShape,HSIZE_T), hdferr,& call h5dwrite_f(dset_id, z_id,dataset_asArray(4,:),int(totalShape,HSIZE_T), hdferr,&
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_rotation: h5dwrite_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
call finalize_write(plist_id, dset_id, filespace_id, memspace_id) call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
@ -1765,7 +1764,7 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! creating a property list for transfer properties (is collective for MPI) ! creating a property list for transfer properties (is collective for MPI)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
readSize = 0 readSize = 0
@ -1773,9 +1772,9 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
#ifdef PETSc #ifdef PETSc
if (parallel) then if (parallel) then
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_dxpl_mpio_f') if(hdferr < 0) error stop 'HDF5 error'
call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894,ext_msg='initialize_read: MPI_allreduce') if (ierr /= 0) error stop 'MPI error'
endif endif
#endif #endif
myStart = int(0,HSIZE_T) myStart = int(0,HSIZE_T)
@ -1785,28 +1784,28 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create dataspace in memory (local shape) ! create dataspace in memory (local shape)
call h5screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape) call h5screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5screate_simple_f/memspace_id') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! creating a property list for IO and set it to collective ! creating a property list for IO and set it to collective
call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr) call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f') if(hdferr < 0) error stop 'HDF5 error'
#ifdef PETSc #ifdef PETSc
call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr) call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_all_coll_metadata_ops_f') if(hdferr < 0) error stop 'HDF5 error'
#endif #endif
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! open the dataset in the file and get the space ID ! open the dataset in the file and get the space ID
call h5dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id) call h5dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dopen_f') if(hdferr < 0) error stop 'HDF5 error'
call h5dget_space_f(dset_id, filespace_id, hdferr) call h5dget_space_f(dset_id, filespace_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dget_space_f') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! select a hyperslab (the portion of the current process) in the file ! select a hyperslab (the portion of the current process) in the file
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr) call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5sselect_hyperslab_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine initialize_read end subroutine initialize_read
@ -1820,15 +1819,15 @@ subroutine finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id
integer :: hdferr integer :: hdferr
call h5pclose_f(plist_id, hdferr) call h5pclose_f(plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: plist_id') if(hdferr < 0) error stop 'HDF5 error'
call h5pclose_f(aplist_id, hdferr) call h5pclose_f(aplist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: aplist_id') if(hdferr < 0) error stop 'HDF5 error'
call h5dclose_f(dset_id, hdferr) call h5dclose_f(dset_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5dclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(filespace_id, hdferr) call h5sclose_f(filespace_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/filespace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(memspace_id, hdferr) call h5sclose_f(memspace_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/memspace_id') if(hdferr < 0) error stop 'HDF5 error'
end subroutine finalize_read end subroutine finalize_read
@ -1859,11 +1858,11 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
!------------------------------------------------------------------------------------------------- !-------------------------------------------------------------------------------------------------
! creating a property list for transfer properties (is collective when reading in parallel) ! creating a property list for transfer properties (is collective when reading in parallel)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr) call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pcreate_f') if(hdferr < 0) error stop 'HDF5 error'
#ifdef PETSc #ifdef PETSc
if (parallel) then if (parallel) then
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr) call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pset_dxpl_mpio_f') if(hdferr < 0) error stop 'HDF5 error'
endif endif
#endif #endif
@ -1874,7 +1873,7 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
#ifdef PETSc #ifdef PETSc
if (parallel) then if (parallel) then
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
if (ierr /= 0) call IO_error(894,ext_msg='initialize_write: MPI_allreduce') if (ierr /= 0) error stop 'MPI error'
endif endif
#endif #endif
myStart = int(0,HSIZE_T) myStart = int(0,HSIZE_T)
@ -1884,16 +1883,16 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create dataspace in memory (local shape) and in file (global shape) ! create dataspace in memory (local shape) and in file (global shape)
call h5screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape) call h5screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dopen_f') if(hdferr < 0) error stop 'HDF5 error'
call h5screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape) call h5screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dget_space_f') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create dataset in the file and select a hyperslab from it (the portion of the current process) ! create dataset in the file and select a hyperslab from it (the portion of the current process)
call h5dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr) call h5dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dcreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr) call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5sselect_hyperslab_f') if(hdferr < 0) error stop 'HDF5 error'
end subroutine initialize_write end subroutine initialize_write
@ -1907,13 +1906,13 @@ subroutine finalize_write(plist_id, dset_id, filespace_id, memspace_id)
integer :: hdferr integer :: hdferr
call h5pclose_f(plist_id, hdferr) call h5pclose_f(plist_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: plist_id') if(hdferr < 0) error stop 'HDF5 error'
call h5dclose_f(dset_id, hdferr) call h5dclose_f(dset_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5dclose_f') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(filespace_id, hdferr) call h5sclose_f(filespace_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/filespace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(memspace_id, hdferr) call h5sclose_f(memspace_id, hdferr)
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/memspace_id') if(hdferr < 0) error stop 'HDF5 error'
end subroutine finalize_write end subroutine finalize_write

193
src/results.f90
View File

@ -7,6 +7,7 @@
module results module results
use DAMASK_interface use DAMASK_interface
use parallelization use parallelization
use IO
use rotations use rotations
use HDF5_utilities use HDF5_utilities
#ifdef PETSc #ifdef PETSc
@ -535,33 +536,46 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
integer(SIZE_T) :: type_size_string, type_size_int integer(SIZE_T) :: type_size_string, type_size_int
integer :: ierr, i integer :: hdferr, ierr, i
!--------------------------------------------------------------------------------------------------- !---------------------------------------------------------------------------------------------------
! compound type: name of phase section + position/index within results array ! compound type: name of phase section + position/index within results array
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr) call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(dt_id, type_size_string, ierr) call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(dt_id, type_size_string, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr) call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr) call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create memory types for each component of the compound type ! create memory types for each component of the compound type
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dt_id, ierr) call h5tclose_f(dt_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! prepare MPI communication (transparent for non-MPI runs) ! prepare MPI communication (transparent for non-MPI runs)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr) call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
memberOffset = 0 memberOffset = 0
do i=1, size(label) do i=1, size(label)
memberOffset(i,worldrank) = count(phaseAt == i)*size(memberAtLocal,2) ! number of points/instance of this process memberOffset(i,worldrank) = count(phaseAt == i)*size(memberAtLocal,2) ! number of points/instance of this process
@ -572,14 +586,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! MPI settings and communication ! MPI settings and communication
#ifdef PETSc #ifdef PETSc
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr) call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5pset_dxpl_mpio_f') if(hdferr < 0) error stop 'HDF5 error'
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/writeSize') if(ierr /= 0) error stop 'MPI error'
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/memberOffset') if(ierr /= 0) error stop 'MPI error'
#endif #endif
myShape = int([size(phaseAt,1),writeSize(worldrank)], HSIZE_T) myShape = int([size(phaseAt,1),writeSize(worldrank)], HSIZE_T)
@ -588,14 +602,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create dataspace in memory (local shape = hyperslab) and in file (global shape) ! create dataspace in memory (local shape = hyperslab) and in file (global shape)
call h5screate_simple_f(2,myShape,memspace_id,ierr,myShape) call h5screate_simple_f(2,myShape,memspace_id,hdferr,myShape)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/memspace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5screate_simple_f(2,totalShape,filespace_id,ierr,totalShape) call h5screate_simple_f(2,totalShape,filespace_id,hdferr,totalShape)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/filespace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr) call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5sselect_hyperslab_f') if(hdferr < 0) error stop 'HDF5 error'
!--------------------------------------------------------------------------------------------------- !---------------------------------------------------------------------------------------------------
! expand phaseAt to consider IPs (is not stored per IP) ! expand phaseAt to consider IPs (is not stored per IP)
@ -611,29 +625,36 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! write the components of the compound type individually ! write the components of the compound type individually
call h5pset_preserve_f(plist_id, .TRUE., ierr) call h5pset_preserve_f(plist_id, .TRUE., hdferr)
if(hdferr < 0) error stop 'HDF5 error'
loc_id = results_openGroup('/mapping') loc_id = results_openGroup('/mapping')
call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, ierr) call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dcreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5dwrite_f(dset_id, name_id, reshape(label(pack(phaseAtMaterialpoint,.true.)),myShape), & call h5dwrite_f(dset_id, name_id, reshape(label(pack(phaseAtMaterialpoint,.true.)),myShape), &
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/name_id') if(hdferr < 0) error stop 'HDF5 error'
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), & call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/position_id') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! close all ! close all
call HDF5_closeGroup(loc_id) call HDF5_closeGroup(loc_id)
call h5pclose_f(plist_id, ierr) call h5pclose_f(plist_id, hdferr)
call h5sclose_f(filespace_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(memspace_id, ierr) call h5sclose_f(filespace_id, hdferr)
call h5dclose_f(dset_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dtype_id, ierr) call h5sclose_f(memspace_id, hdferr)
call h5tclose_f(name_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(position_id, ierr) call h5dclose_f(dset_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dtype_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(name_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(position_id, hdferr)
! for backward compatibility ! for backward compatibility
call results_setLink('/mapping/phase','/mapping/cellResults/constituent') call results_setLink('/mapping/phase','/mapping/cellResults/constituent')
@ -673,33 +694,46 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
integer(SIZE_T) :: type_size_string, type_size_int integer(SIZE_T) :: type_size_string, type_size_int
integer :: ierr, i integer :: hdferr, ierr, i
!--------------------------------------------------------------------------------------------------- !---------------------------------------------------------------------------------------------------
! compound type: name of phase section + position/index within results array ! compound type: name of phase section + position/index within results array
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr) call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(dt_id, type_size_string, ierr) call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(dt_id, type_size_string, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr) call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr) call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create memory types for each component of the compound type ! create memory types for each component of the compound type
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr) call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dt_id, ierr) call h5tclose_f(dt_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! prepare MPI communication (transparent for non-MPI runs) ! prepare MPI communication (transparent for non-MPI runs)
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr) call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
memberOffset = 0 memberOffset = 0
do i=1, size(label) do i=1, size(label)
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process
@ -710,14 +744,14 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! MPI settings and communication ! MPI settings and communication
#ifdef PETSc #ifdef PETSc
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr) call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5pset_dxpl_mpio_f') if(hdferr < 0) error stop 'HDF5 error'
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/writeSize') if(ierr /= 0) error stop 'MPI error'
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/memberOffset') if(ierr /= 0) error stop 'MPI error'
#endif #endif
myShape = int([writeSize(worldrank)], HSIZE_T) myShape = int([writeSize(worldrank)], HSIZE_T)
@ -726,14 +760,14 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! create dataspace in memory (local shape = hyperslab) and in file (global shape) ! create dataspace in memory (local shape = hyperslab) and in file (global shape)
call h5screate_simple_f(1,myShape,memspace_id,ierr,myShape) call h5screate_simple_f(1,myShape,memspace_id,hdferr,myShape)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/memspace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5screate_simple_f(1,totalShape,filespace_id,ierr,totalShape) call h5screate_simple_f(1,totalShape,filespace_id,hdferr,totalShape)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/filespace_id') if(hdferr < 0) error stop 'HDF5 error'
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr) call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5sselect_hyperslab_f') if(hdferr < 0) error stop 'HDF5 error'
!--------------------------------------------------------------------------------------------------- !---------------------------------------------------------------------------------------------------
! expand phaseAt to consider IPs (is not stored per IP) ! expand phaseAt to consider IPs (is not stored per IP)
@ -749,29 +783,36 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! write the components of the compound type individually ! write the components of the compound type individually
call h5pset_preserve_f(plist_id, .TRUE., ierr) call h5pset_preserve_f(plist_id, .TRUE., hdferr)
loc_id = results_openGroup('/mapping') loc_id = results_openGroup('/mapping')
call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, ierr) call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, hdferr)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dcreate_f') if(hdferr < 0) error stop 'HDF5 error'
call h5dwrite_f(dset_id, name_id, reshape(label(pack(homogenizationAtMaterialpoint,.true.)),myShape), & call h5dwrite_f(dset_id, name_id, reshape(label(pack(homogenizationAtMaterialpoint,.true.)),myShape), &
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/name_id') if(hdferr < 0) error stop 'HDF5 error'
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), & call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id) myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/position_id') if(hdferr < 0) error stop 'HDF5 error'
!-------------------------------------------------------------------------------------------------- !--------------------------------------------------------------------------------------------------
! close all ! close all
call HDF5_closeGroup(loc_id) call HDF5_closeGroup(loc_id)
call h5pclose_f(plist_id, ierr) call h5pclose_f(plist_id, hdferr)
call h5sclose_f(filespace_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5sclose_f(memspace_id, ierr) call h5sclose_f(filespace_id, hdferr)
call h5dclose_f(dset_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dtype_id, ierr) call h5sclose_f(memspace_id, hdferr)
call h5tclose_f(name_id, ierr) if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(position_id, ierr) call h5dclose_f(dset_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(dtype_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(name_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
call h5tclose_f(position_id, hdferr)
if(hdferr < 0) error stop 'HDF5 error'
! for backward compatibility ! for backward compatibility
call results_setLink('/mapping/homogenization','/mapping/cellResults/materialpoint') call results_setLink('/mapping/homogenization','/mapping/cellResults/materialpoint')