error stop better suited for internal errors
error stop gives full stack trace, which is very helpful for debugging.
This commit is contained in:
parent
2923f639da
commit
018709bfcf
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@ -12,11 +12,10 @@ module HDF5_utilities
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use prec
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use parallelization
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use IO
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use rotations
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implicit none
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public
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implicit none
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public
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!--------------------------------------------------------------------------------------------------
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!> @brief reads integer or float data of defined shape from file ! ToDo: order of arguments wrong
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@ -93,15 +92,15 @@ subroutine HDF5_utilities_init
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!--------------------------------------------------------------------------------------------------
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!initialize HDF5 library and check if integer and float type size match
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call h5open_f(hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5open_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
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if(hdferr < 0) error stop 'HDF5 error'
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if (int(bit_size(0),SIZE_T)/=typeSize*8) &
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error stop 'Default integer size does not match H5T_NATIVE_INTEGER'
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call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
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if(hdferr < 0) error stop 'HDF5 error'
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if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) &
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error stop 'pReal does not match H5T_NATIVE_DOUBLE'
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@ -128,30 +127,30 @@ integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
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endif
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call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pcreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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#ifdef PETSc
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if (present(parallel)) then; if (parallel) then
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call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pset_fapl_mpio_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif; endif
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#endif
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if (m == 'w') then
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call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fcreate_f (w)')
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if(hdferr < 0) error stop 'HDF5 error'
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elseif(m == 'a') then
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call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (a)')
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if(hdferr < 0) error stop 'HDF5 error'
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elseif(m == 'r') then
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call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f (r)')
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if(hdferr < 0) error stop 'HDF5 error'
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else
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call IO_error(1,ext_msg='HDF5_openFile: h5fopen_f unknown access mode: '//trim(m))
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error stop 'unknown access mode'
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endif
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call h5pclose_f(plist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_openFile: h5pclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end function HDF5_openFile
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@ -166,7 +165,7 @@ subroutine HDF5_closeFile(fileHandle)
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integer :: hdferr
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call h5fclose_f(fileHandle,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_closeFile: h5fclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_closeFile
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@ -185,19 +184,19 @@ integer(HID_T) function HDF5_addGroup(fileHandle,groupName)
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!-------------------------------------------------------------------------------------------------
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! creating a property list for data access properties
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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!-------------------------------------------------------------------------------------------------
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! setting I/O mode to collective
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#ifdef PETSc
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call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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#endif
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!-------------------------------------------------------------------------------------------------
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! Create group
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call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5pclose_f(aplist_id,hdferr)
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@ -221,19 +220,19 @@ integer(HID_T) function HDF5_openGroup(fileHandle,groupName)
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!-------------------------------------------------------------------------------------------------
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! creating a property list for data access properties
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pcreate_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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!-------------------------------------------------------------------------------------------------
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! setting I/O mode to collective
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#ifdef PETSc
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call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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#endif
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!-------------------------------------------------------------------------------------------------
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! opening the group
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call h5gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_openGroup: h5gopen_f ('//trim(groupName)//')')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5pclose_f(aplist_id,hdferr)
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@ -250,7 +249,7 @@ subroutine HDF5_closeGroup(group_id)
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integer :: hdferr
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call h5gclose_f(group_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(group_id))
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_closeGroup
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@ -273,11 +272,11 @@ logical function HDF5_objectExists(loc_id,path)
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endif
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call h5lexists_f(loc_id, p, HDF5_objectExists, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if(HDF5_objectExists) then
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call h5oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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end function HDF5_objectExists
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@ -309,25 +308,25 @@ subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
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ptr(1) = c_loc(attrValue_)
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tcopy_f(H5T_STRING, type_id, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tcopy_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, type_id, c_loc(ptr(1)), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5aclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5tclose_f(type_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_str: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_str
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@ -354,21 +353,21 @@ subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
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endif
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, int([1],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_int
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@ -395,21 +394,21 @@ subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
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endif
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call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5screate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, int([1],HSIZE_T), hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_real: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_real
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@ -439,21 +438,21 @@ subroutine HDF5_addAttribute_int_array(loc_id,attrLabel,attrValue,path)
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array_size = size(attrValue,kind=HSIZE_T)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_INTEGER,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_INTEGER, attrValue, array_size, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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end subroutine HDF5_addAttribute_int_array
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@ -483,21 +482,21 @@ subroutine HDF5_addAttribute_real_array(loc_id,attrLabel,attrValue,path)
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array_size = size(attrValue,kind=HSIZE_T)
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call h5screate_simple_f(1, array_size, space_id, hdferr, array_size)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5screate_simple_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5aexists_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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if (attrExists) then
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call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5adelete_by_name_f')
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if(hdferr < 0) error stop 'HDF5 error'
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endif
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call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),H5T_NATIVE_DOUBLE,space_id,attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5acreate_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5awrite_f(attr_id, H5T_NATIVE_DOUBLE, attrValue, array_size, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5awrite_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5aclose_f(attr_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5tclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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call h5sclose_f(space_id,hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_addAttribute_int_array: h5sclose_f')
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if(hdferr < 0) error stop 'HDF5 error'
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|
||||
end subroutine HDF5_addAttribute_real_array
|
||||
|
||||
|
@ -513,13 +512,13 @@ subroutine HDF5_setLink(loc_id,target_name,link_name)
|
|||
logical :: linkExists
|
||||
|
||||
call h5lexists_f(loc_id, link_name,linkExists, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lexists_soft_f ('//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
if (linkExists) then
|
||||
call h5ldelete_f(loc_id,link_name, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5ldelete_soft_f ('//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
call h5lcreate_soft_f(target_name, loc_id, link_name, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg = 'HDF5_setLink: h5lcreate_soft_f ('//trim(target_name)//' '//trim(link_name)//')')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine HDF5_setLink
|
||||
|
||||
|
@ -558,7 +557,7 @@ subroutine HDF5_read_real1(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real1: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -598,7 +597,7 @@ subroutine HDF5_read_real2(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real2: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -638,7 +637,7 @@ subroutine HDF5_read_real3(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real3: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -678,7 +677,7 @@ subroutine HDF5_read_real4(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real4: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -718,7 +717,7 @@ subroutine HDF5_read_real5(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real5: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -758,7 +757,7 @@ subroutine HDF5_read_real6(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real6: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -798,7 +797,7 @@ subroutine HDF5_read_real7(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_real7: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -840,7 +839,7 @@ subroutine HDF5_read_int1(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int1: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -880,7 +879,7 @@ subroutine HDF5_read_int2(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int2: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -920,7 +919,7 @@ subroutine HDF5_read_int3(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int3: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -960,7 +959,7 @@ subroutine HDF5_read_int4(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int4: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -1000,7 +999,7 @@ subroutine HDF5_read_int5(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int5: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -1040,7 +1039,7 @@ subroutine HDF5_read_int6(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int6: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -1080,7 +1079,7 @@ subroutine HDF5_read_int7(loc_id,dataset,datasetName,parallel)
|
|||
|
||||
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
||||
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_read_int7: h5dread_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
||||
|
||||
|
@ -1121,7 +1120,7 @@ subroutine HDF5_write_real1(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real1: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1162,7 +1161,7 @@ subroutine HDF5_write_real2(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real2: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1203,7 +1202,7 @@ subroutine HDF5_write_real3(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real3: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1244,7 +1243,7 @@ subroutine HDF5_write_real4(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real4: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1286,7 +1285,7 @@ subroutine HDF5_write_real5(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real5: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1327,7 +1326,7 @@ subroutine HDF5_write_real6(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real6: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1368,7 +1367,7 @@ subroutine HDF5_write_real7(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_real7: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1410,7 +1409,7 @@ subroutine HDF5_write_int1(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int1: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1451,7 +1450,7 @@ subroutine HDF5_write_int2(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int2: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1492,7 +1491,7 @@ subroutine HDF5_write_int3(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int3: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1533,7 +1532,7 @@ subroutine HDF5_write_int4(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int4: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1574,7 +1573,7 @@ subroutine HDF5_write_int5(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int5: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1615,7 +1614,7 @@ subroutine HDF5_write_int6(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int6: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1656,7 +1655,7 @@ subroutine HDF5_write_int7(loc_id,dataset,datasetName,parallel)
|
|||
if (product(totalShape) /= 0) then
|
||||
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_int7: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1732,7 +1731,7 @@ subroutine HDF5_write_rotation(loc_id,dataset,datasetName,parallel)
|
|||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
call h5dwrite_f(dset_id, z_id,dataset_asArray(4,:),int(totalShape,HSIZE_T), hdferr,&
|
||||
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='HDF5_write_rotation: h5dwrite_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
|
||||
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
||||
|
@ -1765,7 +1764,7 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
!-------------------------------------------------------------------------------------------------
|
||||
! creating a property list for transfer properties (is collective for MPI)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
readSize = 0
|
||||
|
@ -1773,9 +1772,9 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_dxpl_mpio_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='initialize_read: MPI_allreduce')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
endif
|
||||
#endif
|
||||
myStart = int(0,HSIZE_T)
|
||||
|
@ -1785,28 +1784,28 @@ subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape)
|
||||
call h5screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5screate_simple_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! creating a property list for IO and set it to collective
|
||||
call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#ifdef PETSc
|
||||
call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5pset_all_coll_metadata_ops_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#endif
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! open the dataset in the file and get the space ID
|
||||
call h5dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dopen_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5dget_space_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! select a hyperslab (the portion of the current process) in the file
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_read: h5sselect_hyperslab_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine initialize_read
|
||||
|
||||
|
@ -1820,15 +1819,15 @@ subroutine finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|||
integer :: hdferr
|
||||
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: plist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5pclose_f(aplist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: aplist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5dclose_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/filespace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_read: h5sclose_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine finalize_read
|
||||
|
||||
|
@ -1859,11 +1858,11 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
!-------------------------------------------------------------------------------------------------
|
||||
! creating a property list for transfer properties (is collective when reading in parallel)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5pset_dxpl_mpio_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
endif
|
||||
#endif
|
||||
|
||||
|
@ -1874,7 +1873,7 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
#ifdef PETSc
|
||||
if (parallel) then
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='initialize_write: MPI_allreduce')
|
||||
if (ierr /= 0) error stop 'MPI error'
|
||||
endif
|
||||
#endif
|
||||
myStart = int(0,HSIZE_T)
|
||||
|
@ -1884,16 +1883,16 @@ subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape) and in file (global shape)
|
||||
call h5screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dopen_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dget_space_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataset in the file and select a hyperslab from it (the portion of the current process)
|
||||
call h5dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5dcreate_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='initialize_write: h5sselect_hyperslab_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine initialize_write
|
||||
|
||||
|
@ -1907,13 +1906,13 @@ subroutine finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|||
integer :: hdferr
|
||||
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: plist_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5dclose_f')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/filespace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if (hdferr < 0) call IO_error(1,ext_msg='finalize_write: h5sclose_f/memspace_id')
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
end subroutine finalize_write
|
||||
|
||||
|
|
197
src/results.f90
197
src/results.f90
|
@ -7,6 +7,7 @@
|
|||
module results
|
||||
use DAMASK_interface
|
||||
use parallelization
|
||||
use IO
|
||||
use rotations
|
||||
use HDF5_utilities
|
||||
#ifdef PETSc
|
||||
|
@ -535,33 +536,46 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
|
||||
integer(SIZE_T) :: type_size_string, type_size_int
|
||||
integer :: ierr, i
|
||||
integer :: hdferr, ierr, i
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! compound type: name of phase section + position/index within results array
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
|
||||
call h5tget_size_f(dt_id, type_size_string, ierr)
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tget_size_f(dt_id, type_size_string, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create memory types for each component of the compound type
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tclose_f(dt_id, ierr)
|
||||
call h5tclose_f(dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! prepare MPI communication (transparent for non-MPI runs)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
memberOffset = 0
|
||||
do i=1, size(label)
|
||||
memberOffset(i,worldrank) = count(phaseAt == i)*size(memberAtLocal,2) ! number of points/instance of this process
|
||||
|
@ -572,14 +586,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
!--------------------------------------------------------------------------------------------------
|
||||
! MPI settings and communication
|
||||
#ifdef PETSc
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5pset_dxpl_mpio_f')
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/writeSize')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_constituent: MPI_allreduce/memberOffset')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
#endif
|
||||
|
||||
myShape = int([size(phaseAt,1),writeSize(worldrank)], HSIZE_T)
|
||||
|
@ -588,14 +602,14 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||||
call h5screate_simple_f(2,myShape,memspace_id,ierr,myShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/memspace_id')
|
||||
call h5screate_simple_f(2,myShape,memspace_id,hdferr,myShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5screate_simple_f(2,totalShape,filespace_id,ierr,totalShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5screate_simple_f/filespace_id')
|
||||
call h5screate_simple_f(2,totalShape,filespace_id,hdferr,totalShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5sselect_hyperslab_f')
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! expand phaseAt to consider IPs (is not stored per IP)
|
||||
|
@ -611,29 +625,36 @@ subroutine results_mapping_constituent(phaseAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write the components of the compound type individually
|
||||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||||
call h5pset_preserve_f(plist_id, .TRUE., hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
loc_id = results_openGroup('/mapping')
|
||||
call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dcreate_f')
|
||||
call h5dcreate_f(loc_id, 'phase', dtype_id, filespace_id, dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(phaseAtMaterialpoint,.true.)),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/name_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_constituent: h5dwrite_f/position_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! close all
|
||||
call HDF5_closeGroup(loc_id)
|
||||
call h5pclose_f(plist_id, ierr)
|
||||
call h5sclose_f(filespace_id, ierr)
|
||||
call h5sclose_f(memspace_id, ierr)
|
||||
call h5dclose_f(dset_id, ierr)
|
||||
call h5tclose_f(dtype_id, ierr)
|
||||
call h5tclose_f(name_id, ierr)
|
||||
call h5tclose_f(position_id, ierr)
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(position_id, hdferr)
|
||||
|
||||
! for backward compatibility
|
||||
call results_setLink('/mapping/phase','/mapping/cellResults/constituent')
|
||||
|
@ -673,51 +694,64 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
|
||||
integer(SIZE_T) :: type_size_string, type_size_int
|
||||
integer :: ierr, i
|
||||
integer :: hdferr, ierr, i
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! compound type: name of phase section + position/index within results array
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, ierr)
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), ierr)
|
||||
call h5tget_size_f(dt_id, type_size_string, ierr)
|
||||
call h5tcopy_f(H5T_NATIVE_CHARACTER, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tset_size_f(dt_id, int(len(label(1)),SIZE_T), hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tget_size_f(dt_id, type_size_string, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, ierr)
|
||||
call h5tget_size_f(H5T_NATIVE_INTEGER, type_size_int, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, ierr)
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,ierr)
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string + type_size_int, dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Name", 0_SIZE_T, dt_id,hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(dtype_id, "Position", type_size_string, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create memory types for each component of the compound type
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, ierr)
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_string, name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(name_id, "Name", 0_SIZE_T, dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, ierr)
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, ierr)
|
||||
call h5tcreate_f(H5T_COMPOUND_F, type_size_int, position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tinsert_f(position_id, "Position", 0_SIZE_T, H5T_NATIVE_INTEGER, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5tclose_f(dt_id, ierr)
|
||||
call h5tclose_f(dt_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! prepare MPI communication (transparent for non-MPI runs)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
||||
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
memberOffset = 0
|
||||
do i=1, size(label)
|
||||
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process
|
||||
memberOffset(i,worldrank) = count(homogenizationAt == i)*size(memberAtLocal,1) ! number of points/instance of this process
|
||||
enddo
|
||||
writeSize = 0
|
||||
writeSize(worldrank) = size(memberAtLocal) ! total number of points by this process
|
||||
writeSize(worldrank) = size(memberAtLocal) ! total number of points by this process
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! MPI settings and communication
|
||||
#ifdef PETSc
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5pset_dxpl_mpio_f')
|
||||
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get output at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/writeSize')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
|
||||
call MPI_allreduce(MPI_IN_PLACE,memberOffset,size(memberOffset),MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr)! get offset at each process
|
||||
if (ierr /= 0) call IO_error(894,ext_msg='results_mapping_homogenization: MPI_allreduce/memberOffset')
|
||||
if(ierr /= 0) error stop 'MPI error'
|
||||
#endif
|
||||
|
||||
myShape = int([writeSize(worldrank)], HSIZE_T)
|
||||
|
@ -726,14 +760,14 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! create dataspace in memory (local shape = hyperslab) and in file (global shape)
|
||||
call h5screate_simple_f(1,myShape,memspace_id,ierr,myShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/memspace_id')
|
||||
call h5screate_simple_f(1,myShape,memspace_id,hdferr,myShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5screate_simple_f(1,totalShape,filespace_id,ierr,totalShape)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5screate_simple_f/filespace_id')
|
||||
call h5screate_simple_f(1,totalShape,filespace_id,hdferr,totalShape)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5sselect_hyperslab_f')
|
||||
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myOffset, myShape, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!---------------------------------------------------------------------------------------------------
|
||||
! expand phaseAt to consider IPs (is not stored per IP)
|
||||
|
@ -749,29 +783,36 @@ subroutine results_mapping_homogenization(homogenizationAt,memberAtLocal,label)
|
|||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! write the components of the compound type individually
|
||||
call h5pset_preserve_f(plist_id, .TRUE., ierr)
|
||||
call h5pset_preserve_f(plist_id, .TRUE., hdferr)
|
||||
|
||||
loc_id = results_openGroup('/mapping')
|
||||
call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, ierr)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dcreate_f')
|
||||
call h5dcreate_f(loc_id, 'homogenization', dtype_id, filespace_id, dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
call h5dwrite_f(dset_id, name_id, reshape(label(pack(homogenizationAtMaterialpoint,.true.)),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/name_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dwrite_f(dset_id, position_id, reshape(pack(memberAtGlobal,.true.),myShape), &
|
||||
myShape, ierr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if (ierr < 0) call IO_error(1,ext_msg='results_mapping_homogenization: h5dwrite_f/position_id')
|
||||
myShape, hdferr, file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
!--------------------------------------------------------------------------------------------------
|
||||
! close all
|
||||
call HDF5_closeGroup(loc_id)
|
||||
call h5pclose_f(plist_id, ierr)
|
||||
call h5sclose_f(filespace_id, ierr)
|
||||
call h5sclose_f(memspace_id, ierr)
|
||||
call h5dclose_f(dset_id, ierr)
|
||||
call h5tclose_f(dtype_id, ierr)
|
||||
call h5tclose_f(name_id, ierr)
|
||||
call h5tclose_f(position_id, ierr)
|
||||
call h5pclose_f(plist_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(filespace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5sclose_f(memspace_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5dclose_f(dset_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(dtype_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(name_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
call h5tclose_f(position_id, hdferr)
|
||||
if(hdferr < 0) error stop 'HDF5 error'
|
||||
|
||||
! for backward compatibility
|
||||
call results_setLink('/mapping/homogenization','/mapping/cellResults/materialpoint')
|
||||
|
|
Loading…
Reference in New Issue