DAMASK_EICMD/processing/post/permuteData.py

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#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-
import os,sys,string
import numpy as np
from optparse import OptionParser
import damask
scriptID = string.replace('$Id$','\n','\\n')
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scriptName = os.path.splitext(scriptID.split()[1])[0]
# --------------------------------------------------------------------
# MAIN
# --------------------------------------------------------------------
parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
Permute all values in given column(s).
""", version = scriptID)
parser.add_option('-l','--label',
dest = 'label',
action = 'extend', metavar = '<string LIST>',
help ='column(s) to permute')
parser.add_option('-r', '--rnd',
dest = 'randomSeed',
type = 'int', metavar = 'int',
help = 'seed of random number generator [%default]')
parser.set_defaults(label = [],
randomSeed = None,
)
(options,filenames) = parser.parse_args()
if len(options.label) == 0:
parser.error('no labels specified.')
# --- loop over input files -------------------------------------------------------------------------
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if filenames == []: filenames = [None]
for name in filenames:
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try:
table = damask.ASCIItable(name = name,
buffered = False)
except: continue
table.croak('\033[1m'+scriptName+'\033[0m'+(': '+name if name else ''))
# ------------------------------------------ read header ------------------------------------------
table.head_read()
# ------------------------------------------ process labels ---------------------------------------
errors = []
remarks = []
columns = []
dims = []
indices = table.label_index (options.label)
dimensions = table.label_dimension(options.label)
for i,index in enumerate(indices):
if index == -1: remarks.append('label {} not present...'.format(options.label[i]))
else:
columns.append(index)
dims.append(dimensions[i])
if remarks != []: table.croak(remarks)
if errors != []:
table.croak(errors)
table.close(dismiss = True)
continue
# ------------------------------------------ assemble header ---------------------------------------
randomSeed = int(os.urandom(4).encode('hex'), 16) if options.randomSeed == None else options.randomSeed # random seed per file
np.random.seed(randomSeed)
table.info_append([scriptID + '\t' + ' '.join(sys.argv[1:]),
'random seed {}'.format(randomSeed),
])
table.head_write()
# ------------------------------------------ process data ------------------------------------------
table.data_readArray() # read all data at once
for col,dim in zip(columns,dims):
table.data[:,col:col+dim] = np.random.permutation(table.data[:,col:col+dim])
# ------------------------------------------ output result -----------------------------------------
table.data_writeArray()
# ------------------------------------------ output finalization -----------------------------------
table.close() # close ASCII tables