DAMASK_EICMD/processing/post/shiftData.py

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#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-
import os,sys,string
import numpy as np
from collections import defaultdict
from optparse import OptionParser
import damask
scriptID = string.replace('$Id$','\n','\\n')
scriptName = scriptID.split()[1][:-3]
# --------------------------------------------------------------------
# MAIN
# --------------------------------------------------------------------
parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [file[s]]', description = """
Shift values of scalar, vector, or tensor columns by given offset.
""", version = scriptID)
parser.add_option('-s','--scalar', dest='scalar', action='extend', metavar='<string LIST>',
help='column heading to shift by scalar')
parser.add_option('-v','--vector', dest='vector', action='extend', metavar='<string LIST>',
help='column heading to shift by vector')
parser.add_option('-t','--tensor', dest='tensor', action='extend', metavar='<string LIST>',
help='column heading to shift by tensor')
parser.add_option('-d','--delta', dest='delta', action='extend', metavar='<float LIST>',
help='list of scalar, vector, and tensor shifts (in this order!)')
parser.set_defaults(scalar = [])
parser.set_defaults(vector = [])
parser.set_defaults(tensor = [])
parser.set_defaults(delta = [])
(options,filenames) = parser.parse_args()
options.delta = np.array(options.delta,'d')
datainfo = { # list of requested labels per datatype
'scalar': {'len':1,
'label':[]},
'vector': {'len':3,
'label':[]},
'tensor': {'len':9,
'label':[]},
}
length = 0
if options.scalar != []: datainfo['scalar']['label'] += options.scalar; length += len(options.scalar)*datainfo['scalar']['len']
if options.vector != []: datainfo['vector']['label'] += options.vector; length += len(options.vector)*datainfo['vector']['len']
if options.tensor != []: datainfo['tensor']['label'] += options.tensor; length += len(options.tensor)*datainfo['tensor']['len']
if len(options.delta) != length:
parser.error('length of offset vector does not match column types...')
# ------------------------------------------ setup file handles ------------------------------------
files = []
if filenames == []:
files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout, 'croak':sys.stderr})
else:
for name in filenames:
if os.path.exists(name):
files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w'), 'croak':sys.stderr})
# ------------------------------------------ loop over input files ---------------------------------
for file in files:
if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
table = damask.ASCIItable(file['input'],file['output'],False) # make unbuffered ASCII_table
table.head_read() # read ASCII header info
table.info_append(scriptID + '\t' + ' '.join(sys.argv[1:]))
# --------------- figure out columns to process ---------------------------------------------------
active = defaultdict(list)
column = defaultdict(dict)
for datatype,info in datainfo.items():
for label in info['label']:
key = {True :'1_%s',
False:'%s' }[info['len']>1]%label
if key in table.labels:
active[datatype].append(label)
column[datatype][label] = table.labels.index(key) # remember columns of requested data
else:
file['croak'].write('column %s not found...\n'%label)
# ------------------------------------------ assemble header ---------------------------------------
table.head_write()
# ------------------------------------------ process data ------------------------------------------
outputAlive = True
while outputAlive and table.data_read(): # read next data line of ASCII table
i = 0
for datatype,labels in sorted(active.items(),key=lambda x:datainfo[x[0]]['len']): # loop over scalar,vector,tensor
for label in labels: # loop over all requested labels
for j in xrange(datainfo[datatype]['len']): # loop over entity elements
table.data[column[datatype][label]+j] = float(table.data[column[datatype][label]+j]) + options.delta[i]
i += 1
outputAlive = table.data_write() # output processed line
# ------------------------------------------ output result -----------------------------------------
outputAlive and table.output_flush() # just in case of buffered ASCII table
file['input'].close() # close input ASCII table (works for stdin)
file['output'].close() # close output ASCII table (works for stdout)
if file['name'] != 'STDIN':
os.rename(file['name']+'_tmp',file['name']) # overwrite old one with tmp new