DAMASK_EICMD/processing/post/addDeviator.py

#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-

import os,re,sys,math,string,damask
from optparse import OptionParser, Option

oneThird = 1.0/3.0
# -----------------------------
class extendableOption(Option):
# -----------------------------
# used for definition of new option parser action 'extend', which enables to take multiple option arguments
# taken from online tutorial http://docs.python.org/library/optparse.html
  
  ACTIONS = Option.ACTIONS + ("extend",)
  STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
  TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
  ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)

  def take_action(self, action, dest, opt, value, values, parser):
    if action == "extend":
      lvalue = value.split(",")
      values.ensure_value(dest, []).extend(lvalue)
    else:
      Option.take_action(self, action, dest, opt, value, values, parser)



def deviator(m):
  sph = oneThird*(m[0]+m[4]+m[8])
  m[0] = m[0] - sph
  m[4] = m[4] - sph
  m[8] = m[8] - sph
  return  m


# --------------------------------------------------------------------
#                                MAIN
# --------------------------------------------------------------------

parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
Add column(s) containing deviator of requested tensor column(s).

""" + string.replace('$Id$','\n','\\n')
)


parser.add_option('-t','--tensor',      dest='tensor', action='extend', type='string', \
                                        help='heading of columns containing tensor field values')
parser.add_option('-s','--spherical',   dest='hydrostatic', action='store_true',\
                                        help='also add sperical part of tensor (hydrostatic component, pressure)')
parser.set_defaults(hydrostatic = False)
parser.set_defaults(tensor = [])

(options,filenames) = parser.parse_args()

if len(options.tensor) == 0:
  parser.error('no data column specified...')

datainfo = {                                                               # list of requested labels per datatype
             'tensor':     {'len':9,
                            'label':[]},
           }


if options.tensor != None:    datainfo['tensor']['label'] += options.tensor



# ------------------------------------------ setup file handles ---------------------------------------  

files = []
if filenames == []:
  files.append({'name':'STDIN', 'input':sys.stdin, 'output':sys.stdout})
else:
  for name in filenames:
    if os.path.exists(name):
      files.append({'name':name, 'input':open(name), 'output':open(name+'_tmp','w')})

# ------------------------------------------ loop over input files ---------------------------------------  

for file in files:
  if file['name'] != 'STDIN': print file['name']

  table = damask.ASCIItable(file['input'],file['output'],False)             # make unbuffered ASCII_table
  table.head_read()                                                         # read ASCII header info
  table.info_append(string.replace('$Id$','\n','\\n') + \
                    '\t' + ' '.join(sys.argv[1:]))

  active = {}
  column = {}
  head = []

  for datatype,info in datainfo.items():
    for label in info['label']:
      key = {True :'1_%s',
             False:'%s'   }[info['len']>1]%label
      if key not in table.labels:
        sys.stderr.write('column %s not found...\n'%key)
      else:
        if datatype not in active: active[datatype] = []
        if datatype not in column: column[datatype] = {}
        active[datatype].append(label)
        column[datatype][label] = table.labels.index(key)                   # remember columns of requested data
        table.labels_append(['%i_dev(%s)'%(i+1,label) for i in xrange(9)])  # extend ASCII header with new labels
        if(options.hydrostatic): table.labels_append('sph(%s)'%label)

# ------------------------------------------ assemble header ---------------------------------------  

  table.head_write()

# ------------------------------------------ process data ---------------------------------------  

  while table.data_read():                                                  # read next data line of ASCII table
  
    for datatype,labels in active.items():                                  # loop over vector,tensor
      for label in labels:                                                  # loop over all deviators
        myTensor = map(float,table.data[column[datatype][label]:
                             column[datatype][label]+datainfo[datatype]['len']])
        table.data_append(deviator(myTensor))
        if(options.hydrostatic): table.data_append(oneThird*(myTensor[0]+myTensor[4]+myTensor[8]))

    table.data_write()                                                      # output processed line

# ------------------------------------------ output result ---------------------------------------  

  table.output_flush()                                                      # just in case of buffered ASCII table

  file['input'].close()                                                     # close input ASCII table
  if file['name'] != 'STDIN':
    file['output'].close                                                    # close output ASCII table
    os.rename(file['name']+'_tmp',file['name'])                             # overwrite old one with tmp new