59 lines
2.1 KiB
Python
59 lines
2.1 KiB
Python
|
#!/usr/bin/env python3
|
||
|
|
|
||
|
|
import os
|
||
|
|
import sys
|
||
|
|
from io import StringIO
|
||
|
|
from optparse import OptionParser
|
||
|
|
|
||
|
|
import numpy as np
|
||
|
|
|
||
|
|
import damask
|
||
|
|
|
||
|
|
|
||
|
|
scriptName = os.path.splitext(os.path.basename(__file__))[0]
|
||
|
|
scriptID = ' '.join([scriptName,damask.version])
|
||
|
|
|
||
|
|
|
||
|
|
# --------------------------------------------------------------------
|
||
|
|
# MAIN
|
||
|
|
# --------------------------------------------------------------------
|
||
|
|
|
||
|
|
parser = OptionParser(option_class=damask.extendableOption, usage='%prog options [ASCIItable(s)]', description = """
|
||
|
|
Add column(s) containing divergence of requested column(s).
|
||
|
|
Operates on periodic ordered three-dimensional data sets of vector and tensor fields.
|
||
|
|
""", version = scriptID)
|
||
|
|
|
||
|
|
parser.add_option('-p','--pos','--periodiccellcenter',
|
||
|
|
dest = 'pos',
|
||
|
|
type = 'string', metavar = 'string',
|
||
|
|
help = 'label of coordinates [%default]')
|
||
|
|
parser.add_option('-l','--label',
|
||
|
|
dest = 'labels',
|
||
|
|
action = 'extend', metavar = '<string LIST>',
|
||
|
|
help = 'label(s) of field values')
|
||
|
|
|
||
|
|
parser.set_defaults(pos = 'pos',
|
||
|
|
)
|
||
|
|
|
||
|
|
(options,filenames) = parser.parse_args()
|
||
|
|
if filenames == []: filenames = [None]
|
||
|
|
|
||
|
|
if options.labels is None: parser.error('no data column specified.')
|
||
|
|
|
||
|
|
for name in filenames:
|
||
|
|
damask.util.report(scriptName,name)
|
||
|
|
|
||
|
|
table = damask.Table.load(StringIO(''.join(sys.stdin.read())) if name is None else name)
|
||
|
|
grid,size,origin = damask.grid_filters.cellsSizeOrigin_coordinates0_point(table.get(options.pos))
|
||
|
|
|
||
|
|
for label in options.labels:
|
||
|
|
field = table.get(label)
|
||
|
|
shape = (3,) if np.prod(field.shape)//np.prod(grid) == 3 else (3,3) # vector or tensor
|
||
|
|
field = field.reshape(tuple(grid)+(-1,),order='F').reshape(tuple(grid)+shape)
|
||
|
|
div = damask.grid_filters.divergence(size,field)
|
||
|
|
table = table.add('divFFT({})'.format(label),
|
||
|
|
div.reshape(tuple(grid)+(-1,)).reshape(-1,np.prod(shape)//3,order='F'),
|
||
|
|
scriptID+' '+' '.join(sys.argv[1:]))
|
||
|
|
|
||
|
|
table.save((sys.stdout if name is None else name))
|