DAMASK_EICMD/processing/post/DADF5_postResults.py

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#!/usr/bin/env python3
import os
import argparse
import numpy as np
import damask
scriptName = os.path.splitext(os.path.basename(__file__))[0]
scriptID = ' '.join([scriptName,damask.version])
# --------------------------------------------------------------------
# MAIN
# --------------------------------------------------------------------
parser = argparse.ArgumentParser()
parser.add_argument('filenames', nargs='+',
help='DADF5 files')
parser.add_argument('-d','--dir', dest='dir',default='postProc',metavar='string',
help='name of subdirectory relative to the location of the DADF5 file to hold output')
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parser.add_argument('--mat', nargs='+',
help='labels for homogenization',dest='mat')
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parser.add_argument('--con', nargs='+',
help='labels for phase',dest='con')
options = parser.parse_args()
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if options.mat is None: options.mat=[]
if options.con is None: options.con=[]
for filename in options.filenames:
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results = damask.Result(filename)
if not results.structured: continue
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coords = damask.grid_filters.cell_coord0(results.grid,results.size,results.origin).reshape(-1,3,order='F')
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N_digits = int(np.floor(np.log10(int(results.increments[-1][3:]))))+1
N_digits = 5 # hack to keep test intact
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for inc in damask.util.show_progress(results.iterate('increments'),len(results.increments)):
table = damask.Table(np.ones(np.product(results.grid),dtype=int)*int(inc[3:]),{'inc':(1,)})\
.add('pos',coords.reshape(-1,3))
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results.pick('homogenizations',False)
results.pick('phases',True)
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for label in options.con:
x = results.get_dataset_location(label)
if len(x) != 0:
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table = table.add(label,results.read_dataset(x,0,plain=True).reshape(results.grid.prod(),-1))
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results.pick('phases',False)
results.pick('homogenizations',True)
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for label in options.mat:
x = results.get_dataset_location(label)
if len(x) != 0:
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table = table.add(label,results.read_dataset(x,0,plain=True).reshape(results.grid.prod(),-1))
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dirname = os.path.abspath(os.path.join(os.path.dirname(filename),options.dir))
if not os.path.isdir(dirname):
os.mkdir(dirname,0o755)
file_out = '{}_inc{}.txt'.format(os.path.splitext(os.path.split(filename)[-1])[0],
inc[3:].zfill(N_digits))
table.save(os.path.join(dirname,file_out),legacy=True)