663 lines
20 KiB
Diff
663 lines
20 KiB
Diff
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---
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+++
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@@ -298,7 +298,23 @@
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. "$DIR/getarch"
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+
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+# getting user subroutine file name
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+found=0
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+for i in "$@"; do
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+ if test $found = 1; then
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+ DAMASK_USER=$i
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+ found=0
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+ fi
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+ case $i in
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+ -u* | -U*)
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+ found=1
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+ ;;
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+ esac
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+done
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+# sourcing include_linux64 (needs DAMASK_USER to be set)
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. $MARC_INCLUDE
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+
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#
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#
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@@ -399,7 +415,7 @@
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did=
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vid=
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user=
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-usersubname=
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+usernoext=
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objs=
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qid=background
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cpu=
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@@ -568,7 +584,7 @@
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justlist=yes
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;;
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-fe* | -FE*)
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- feature=$value
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+ feature=$value
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;;
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-pr* | -PR*)
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@@ -664,50 +680,19 @@
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esac
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;;
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-u* | -U*)
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- user=`dirname $value`/`$BASENAME $value .f`
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- usersubname=$user
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- basefile=`$BASENAME $value`
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- if test ${basefile##*.} = f
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- then
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- user=`dirname $value`/`$BASENAME $value .f`
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- usersubname=$user.f
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- elif test ${basefile##*.} = F
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- then
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- user=`dirname $value`/`$BASENAME $value .F`
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- usersubname=$user.F
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- elif test ${basefile##*.} = f90
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- then
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- user=`dirname $value`/`$BASENAME $value .f90`
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- usersubname=$user.f90
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- elif test ${basefile##*.} = F90
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- then
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- user=`dirname $value`/`$BASENAME $value .F90`
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- usersubname=$user.F90
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- fi
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+ user=$value
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case $user in
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\/*)
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;;
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*)
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user=`pwd`/$user
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- usersubname=`pwd`/$usersubname
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;;
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esac
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- if test ! -f $usersubname
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- then
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- if test -f $usersubname.f
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- then
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- usersubname=$usersubname.f
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- elif test -f $usersubname.F
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- then
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- usersubname=$usersubname.F
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- elif test -f $usersubname.f90
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- then
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- usersubname=$usersubname.f90
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- elif test -f $usersubname.F90
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- then
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- usersubname=$usersubname.F90
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- fi
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- fi
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+ usernoext=$user
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
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;;
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-obj | -OBJ)
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objs="$value"
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@@ -1188,12 +1173,12 @@
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fi
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fi
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fi
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- if test "$usersubname"
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+ if test "$user"
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then
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- if test ! -f $usersubname
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+ if test ! -f $user
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then
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error="$error
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-user subroutine file $usersubname not accessible"
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+user subroutine file $user not accessible"
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fi
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fi
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if test "$objs"
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@@ -1367,7 +1352,7 @@
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else
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error="$error
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job id required"
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- fi
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+fi
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fi
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case $qid in
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@@ -1508,7 +1493,7 @@
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Marc shared lib : $progdll
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Version type : $mode
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Job ID : $DIRJID/$jid
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-User subroutine name : $usersubname
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+User subroutine name : $user
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User objects/libs : $objs
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Restart file job ID : $rid
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Substructure file ID : $sid
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@@ -1540,7 +1525,7 @@
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Marc shared lib : $progdll
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Version type : $mode
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Job ID : $DIRJID/$jid
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-User subroutine name : $usersubname
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+User subroutine name : $user
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User objects/libs : $objs
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Restart file job ID : $rid
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Substructure file ID : $sid
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@@ -1663,7 +1648,7 @@
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;;
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esac
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fi
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- $ECHO "User subroutine name ($usersubname)? $ECHOTXT"
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+ $ECHO "User subroutine name ($user)? $ECHOTXT"
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read value
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if test "$value"
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then
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@@ -1672,50 +1657,19 @@
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user=
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;;
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*)
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- user=`dirname $value`/`$BASENAME $value .f`
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- usersubname=$user
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- basefile=`$BASENAME $value`
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- if test ${basefile##*.} = f
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- then
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- user=`dirname $value`/`$BASENAME $value .f`
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- usersubname=$user.f
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- elif test ${basefile##*.} = F
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- then
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- user=`dirname $value`/`$BASENAME $value .F`
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- usersubname=$user.F
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- elif test ${basefile##*.} = f90
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- then
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- user=`dirname $value`/`$BASENAME $value .f90`
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- usersubname=$user.f90
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- elif test ${basefile##*.} = F90
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- then
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- user=`dirname $value`/`$BASENAME $value .F90`
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- usersubname=$user.F90
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- fi
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+ user=$value
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case $user in
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- \/*)
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- ;;
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- *)
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+ \/*)
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+ ;;
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+ *)
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user=`pwd`/$user
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- usersubname=`pwd`/$usersubname
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- ;;
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- esac
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- if test ! -f $usersubname
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- then
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- if test -f $usersubname.f
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- then
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- usersubname=$usersubname.f
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- elif test -f $usersubname.F
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- then
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- usersubname=$usersubname.F
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- elif test -f $usersubname.f90
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- then
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- usersubname=$usersubname.f90
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- elif test -f $usersubname.F90
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- then
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- usersubname=$usersubname.F90
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- fi
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- fi
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+ ;;
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+ esac
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+ usernoext=$user
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .F`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .for`
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+ usernoext=`dirname $usernoext`/`$BASENAME $usernoext .f90`
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;;
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esac
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fi
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@@ -2256,11 +2210,12 @@
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#
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# user subroutine used
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#
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+# add DAMASK options for linking
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+ DAMASK="-lstdc++"
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if test "$user"
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then
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-# program=$user.marc
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- program=$DIRJOB/`$BASENAME $user .f`.marc
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+ program=$usernoext.marc
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case $program in
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\/* | \.\/*)
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bd=
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@@ -2373,7 +2328,7 @@
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fi
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if test "$user"
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then
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- execpath=$DIRJOB/`$BASENAME $user .f`.marc
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+ execpath=$usernoext.marc
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usersub=1
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fi
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export execpath
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@@ -3256,44 +3211,27 @@
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echo
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if test "$user"
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then
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- userobj=$DIRJOB/`$BASENAME $user .f`.o
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- basefile=`$BASENAME $usersubname`
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- if test ${basefile##*.} = f
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- then
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- usersub=$DIRJOB/`$BASENAME $user .f`.F
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- ln -sf "$user.f" "$usersub"
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- else
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- usersub=$usersubname
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- fi
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-
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+ userobj=$usermoext.o
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fi
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cat > $jid.runmarcscript << END4
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if test "$user"
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then
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- if test ${basefile##*.} = f
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- then
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- ln -sf "$user.f" "$usersub"
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- fi
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if test $MACHINENAME = "CRAY"
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then
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- $FORTRAN $usersub || \
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+ $DFORTRANMP $user || \
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{
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- echo "$0: compile failed for $user.f"
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+ echo "$0: compile failed for $user"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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else
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- $FORTRAN $usersub -o $userobj || \
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+ $DFORTRANMP $user -o $userobj || \
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{
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- echo "$0: compile failed for $user.f"
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+ echo "$0: compile failed for $user"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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fi
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- if test ${basefile##*.} = f
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- then
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- /bin/rm -f "$usersub"
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- fi
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fi
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@@ -3313,7 +3251,8 @@
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$TKLIBS \
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$MRCLIBS \
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$METISLIBS \
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- $SFLIB \
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+ $DAMASK \
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+ $SFLIB \
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$OPENSSL_LIB \
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$SYSLIBS \
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$SECLIBS || \
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@@ -3326,6 +3265,8 @@
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prgsav=yes
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fi
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/bin/rm $userobj 2>/dev/null
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+/bin/rm $DIRJOB/*.mod 2>/dev/null
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+/bin/rm $DIRJOB/*.smod 2>/dev/null
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#
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# run marc
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@@ -3372,7 +3313,7 @@
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fi
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else
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if test $cpdll = yes; then
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- filename=`basename $usersubname .f`
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+ filename=$usernoext
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/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
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fi
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if test $rmdll = yes
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@@ -3538,7 +3479,7 @@
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# first copy over the user sub if local directories
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if test ${dirstatus[$counter]} = "local"
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then
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- $RCP $user.f $i:$DIR1/
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+ $RCP $user $i:$DIR1/
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fi
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# do the compilation on the other machine
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if test ${dirstatus[$counter]} = "shared"
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@@ -3551,21 +3492,21 @@
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remoteuser=$DIR1/`$BASENAME $user`
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$RSH $i /bin/rm $remoteprog 2> /dev/null
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echo
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- $RSH $i $DIR2/tools/comp_user $DIR2 $DIR1 $remoteuser $remoteprog
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+ $RSH $i $DIR2/tools/comp_damask_mp $DIR2 $DIR1 $remoteuser $remoteprog
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# check if successful, the new executable should be there
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line=`$RSH $i /bin/ls $remoteprog 2> /dev/null`
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if test "$line"
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then
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echo compilation and linking successful on host $i
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else
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- echo "$0: compile failed for $user.f on host $i"
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+ echo "$0: compile failed for $user on host $i"
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echo " $PRODUCT Exit number 3"
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exit 1
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fi
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# remove the user subroutine on remote machine
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if test ${dirstatus[$counter]} = "local"
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then
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- $RSH $i /bin/rm $remoteuser.f 2> /dev/null
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+ $RSH $i /bin/rm $remoteuser 2> /dev/null
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fi
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fi
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|
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fi
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@@ -3575,39 +3516,27 @@
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if test "$userhost"
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then
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echo
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- echo "Compiling and linking user subroutine $user.f on host `hostname`"
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+ echo "Compiling and linking user subroutine $user on host `hostname`"
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fi
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- userobj=$DIRJOB/`$BASENAME $user .f`.o
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- basefile=`$BASENAME $usersubname`
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- if test ${basefile##*.} = f
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- then
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- usersub=$DIRJOB/`$BASENAME $user .f`.F
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- ln -sf "$user.f" "$usersub"
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- else
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- usersub=$usersubname
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- fi
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+ userobj=$usernoext.o
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|
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if test $MACHINENAME = "CRAY"
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then
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- $FORTRAN $usersub || \
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+ $DFORTRANMP $user || \
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|
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{
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- echo "$0: compile failed for $user.f"
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+ echo "$0: compile failed for $user"
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echo " $PRODUCT Exit number 3"
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exit 1
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}
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/bin/rm $program 2>/dev/null
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else
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- $FORTRAN $usersub -o $userobj || \
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+ $DFORTRANMP $user -o $userobj || \
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{
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|
|
- echo "$0: compile failed for $user.f"
|
||
|
|
+ echo "$0: compile failed for $user"
|
||
|
|
echo " $PRODUCT Exit number 3"
|
||
|
|
exit 1
|
||
|
|
}
|
||
|
|
/bin/rm $program 2>/dev/null
|
||
|
|
fi
|
||
|
|
- if test ${basefile##*.} = f
|
||
|
|
- then
|
||
|
|
- /bin/rm -f "$usersub"
|
||
|
|
- fi
|
||
|
|
fi # if test $user
|
||
|
|
|
||
|
|
|
||
|
|
@@ -3627,7 +3556,8 @@
|
||
|
|
$TKLIBS \
|
||
|
|
$MRCLIBS \
|
||
|
|
$METISLIBS \
|
||
|
|
- $SFLIB \
|
||
|
|
+ $DAMASK \
|
||
|
|
+ $SFLIB \
|
||
|
|
$OPENSSL_LIB \
|
||
|
|
$SYSLIBS \
|
||
|
|
$SECLIBS || \
|
||
|
|
@@ -3668,6 +3598,8 @@
|
||
|
|
prgsav=yes
|
||
|
|
fi # if test $link
|
||
|
|
/bin/rm $userobj 2>/dev/null
|
||
|
|
+/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||
|
|
+/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||
|
|
|
||
|
|
#
|
||
|
|
# run marc
|
||
|
|
@@ -3726,42 +3658,42 @@
|
||
|
|
counter=0
|
||
|
|
if test -f "$host_filt"
|
||
|
|
then
|
||
|
|
- for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
|
||
|
|
- do
|
||
|
|
- ibase=${i%%.*}
|
||
|
|
- if test $ibase != $thishost
|
||
|
|
+ for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
|
||
|
|
+ do
|
||
|
|
+ ibase=${i%%.*}
|
||
|
|
+ if test $ibase != $thishost
|
||
|
|
+ then
|
||
|
|
+ counter=$((counter+1))
|
||
|
|
+ DIR1=$DIRJOB
|
||
|
|
+ line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||
|
|
+ workdir=`echo $line | $AWK '{print $3}'`
|
||
|
|
+ if test -n "$workdir"
|
||
|
|
then
|
||
|
|
- counter=$((counter+1))
|
||
|
|
- DIR1=$DIRJOB
|
||
|
|
- line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||
|
|
- workdir=`echo $line | $AWK '{print $3}'`
|
||
|
|
- if test -n "$workdir"
|
||
|
|
- then
|
||
|
|
- DIR1=$workdir
|
||
|
|
- fi
|
||
|
|
- # if an incompatible host uses shared directory,
|
||
|
|
- # then the root machine deletes the executable
|
||
|
|
- if test ${dirstatus[$counter]} = "shared" -a ${compstatus[$counter]} = "no"
|
||
|
|
- then
|
||
|
|
- hname=_$ibase
|
||
|
|
- /bin/rm ${execname}$hname
|
||
|
|
- fi
|
||
|
|
- # if local directory used, the remote machine
|
||
|
|
- # deletes the executable
|
||
|
|
- if test ${dirstatus[$counter]} = "local"
|
||
|
|
- then
|
||
|
|
- $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
|
||
|
|
- fi
|
||
|
|
+ DIR1=$workdir
|
||
|
|
fi
|
||
|
|
- done
|
||
|
|
- fi
|
||
|
|
+ # if an incompatible host uses shared directory,
|
||
|
|
+ # then the root machine deletes the executable
|
||
|
|
+ if test ${dirstatus[$counter]} = "shared" -a ${compstatus[$counter]} = "no"
|
||
|
|
+ then
|
||
|
|
+ hname=_$ibase
|
||
|
|
+ /bin/rm ${execname}$hname
|
||
|
|
+ fi
|
||
|
|
+ # if local directory used, the remote machine
|
||
|
|
+ # deletes the executable
|
||
|
|
+ if test ${dirstatus[$counter]} = "local"
|
||
|
|
+ then
|
||
|
|
+ $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
|
||
|
|
+ fi
|
||
|
|
+ fi
|
||
|
|
+ done
|
||
|
|
fi
|
||
|
|
fi
|
||
|
|
+fi
|
||
|
|
fi
|
||
|
|
else
|
||
|
|
#dllrun >0
|
||
|
|
if test $cpdll = yes; then
|
||
|
|
- filename=`basename $usersubname .f`
|
||
|
|
+ filename=$usernoext
|
||
|
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||
|
|
fi
|
||
|
|
if test $rmdll = yes;then
|
||
|
|
@@ -3886,7 +3818,7 @@
|
||
|
|
# first copy over the user sub if local directories
|
||
|
|
if test ${dirstatus[$counter]} = "local"
|
||
|
|
then
|
||
|
|
- $RCP $user.f $i:$DIR1/
|
||
|
|
+ $RCP $user $i:$DIR1/
|
||
|
|
fi
|
||
|
|
# do the compilation on the other machine
|
||
|
|
if test ${dirstatus[$counter]} = "shared"
|
||
|
|
@@ -3899,20 +3831,20 @@
|
||
|
|
remoteuser=$DIR1/`$BASENAME $user`
|
||
|
|
$RSH $i /bin/rm $remoteprog 2> /dev/null
|
||
|
|
echo
|
||
|
|
- $RSH $i $DIR2/tools/comp_user $DIR2 $DIR1 $remoteuser $remoteprog
|
||
|
|
+ $RSH $i $DIR2/tools/comp_damask_mp $DIR2 $DIR1 $remoteuser $remoteprog
|
||
|
|
# check if successful, the new executable should be there
|
||
|
|
line=`$RSH $i /bin/ls $remoteprog 2> /dev/null`
|
||
|
|
if test "$line"
|
||
|
|
then
|
||
|
|
echo compilation and linking successful on host $i
|
||
|
|
else
|
||
|
|
- echo "$0: compile failed for $user.f on host $i"
|
||
|
|
+ echo "$0: compile failed for $user on host $i"
|
||
|
|
exit 1
|
||
|
|
fi
|
||
|
|
# remove the user subroutine on remote machine
|
||
|
|
if test ${dirstatus[$counter]} = "local"
|
||
|
|
then
|
||
|
|
- $RSH $i /bin/rm $remoteuser.f 2> /dev/null
|
||
|
|
+ $RSH $i /bin/rm $remoteuser 2> /dev/null
|
||
|
|
fi
|
||
|
|
fi
|
||
|
|
fi
|
||
|
|
@@ -3922,37 +3854,25 @@
|
||
|
|
if test "$userhost"
|
||
|
|
then
|
||
|
|
echo
|
||
|
|
- echo "Compiling and linking user subroutine $user.f on host `hostname`"
|
||
|
|
+ echo "Compiling and linking user subroutine $user on host `hostname`"
|
||
|
|
fi
|
||
|
|
- userobj=$DIRJOB/`$BASENAME $user .f`.o
|
||
|
|
- basefile=`$BASENAME $usersubname`
|
||
|
|
- if test ${basefile##*.} = f
|
||
|
|
- then
|
||
|
|
- usersub=$DIRJOB/`$BASENAME $user .f`.F
|
||
|
|
- ln -sf "$user.f" "$usersub"
|
||
|
|
- else
|
||
|
|
- usersub=$usersubname
|
||
|
|
- fi
|
||
|
|
+ userobj=$usernoext.o
|
||
|
|
if test $MACHINENAME = "CRAY"
|
||
|
|
then
|
||
|
|
- $FORTRAN $usersub || \
|
||
|
|
+ $DFORTRANMP $user || \
|
||
|
|
{
|
||
|
|
- echo "$0: compile failed for $user.f"
|
||
|
|
+ echo "$0: compile failed for $user"
|
||
|
|
exit 1
|
||
|
|
}
|
||
|
|
/bin/rm $program 2>/dev/null
|
||
|
|
else
|
||
|
|
- $FORTRAN $usersub -o $userobj || \
|
||
|
|
+ $DFORTRANMP $user -o $userobj || \
|
||
|
|
{
|
||
|
|
- echo "$0: compile failed for $user.f"
|
||
|
|
+ echo "$0: compile failed for $user"
|
||
|
|
exit 1
|
||
|
|
}
|
||
|
|
/bin/rm $program 2>/dev/null
|
||
|
|
fi
|
||
|
|
- if test ${basefile##*.} = f
|
||
|
|
- then
|
||
|
|
- /bin/rm -f "$usersub"
|
||
|
|
- fi
|
||
|
|
fi # if test $user
|
||
|
|
|
||
|
|
|
||
|
|
@@ -3972,6 +3892,7 @@
|
||
|
|
$TKLIBS \
|
||
|
|
$MRCLIBS \
|
||
|
|
$METISLIBS \
|
||
|
|
+ $DAMASK \
|
||
|
|
$SFLIB \
|
||
|
|
$OPENSSL_LIB \
|
||
|
|
$SYSLIBS \
|
||
|
|
@@ -4012,7 +3933,8 @@
|
||
|
|
prgsav=yes
|
||
|
|
fi # if test $link
|
||
|
|
/bin/rm $userobj 2>/dev/null
|
||
|
|
-
|
||
|
|
+/bin/rm $DIRJOB/*.mod 2>/dev/null
|
||
|
|
+/bin/rm $DIRJOB/*.smod 2>/dev/null
|
||
|
|
# done if no job id given
|
||
|
|
if test -z "$jid"
|
||
|
|
then
|
||
|
|
@@ -4052,7 +3974,7 @@
|
||
|
|
RUN_JOB="$BINDIR/exeddm $RUN_JOB -ddm $ddm_arc "
|
||
|
|
fi
|
||
|
|
|
||
|
|
-$RUN_JOB
|
||
|
|
+ $RUN_JOB
|
||
|
|
|
||
|
|
if test $nprocd -gt 1
|
||
|
|
then
|
||
|
|
@@ -4096,42 +4018,42 @@
|
||
|
|
counter=0
|
||
|
|
if test -f "$host_filt"
|
||
|
|
then
|
||
|
|
- for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
|
||
|
|
- do
|
||
|
|
- ibase=${i%%.*}
|
||
|
|
- if test $ibase != $thishost
|
||
|
|
+ for i in `$AWK -v n=$numfield '{print $n}' $host_filt`
|
||
|
|
+ do
|
||
|
|
+ ibase=${i%%.*}
|
||
|
|
+ if test $ibase != $thishost
|
||
|
|
+ then
|
||
|
|
+ counter=$((counter+1))
|
||
|
|
+ DIR1=$DIRJOB
|
||
|
|
+ line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||
|
|
+ workdir=`echo $line | $AWK '{print $3}'`
|
||
|
|
+ if test -n "$workdir"
|
||
|
|
then
|
||
|
|
- counter=$((counter+1))
|
||
|
|
- DIR1=$DIRJOB
|
||
|
|
- line=`grep -v '^#' $userhost | grep "^$ibase "`
|
||
|
|
- workdir=`echo $line | $AWK '{print $3}'`
|
||
|
|
- if test -n "$workdir"
|
||
|
|
- then
|
||
|
|
- DIR1=$workdir
|
||
|
|
- fi
|
||
|
|
- # if an incompatible host uses shared directory,
|
||
|
|
- # then the root machine deletes the executable
|
||
|
|
- if test ${dirstatus[$counter]} = "shared" -a ${compstatus[$counter]} = "no"
|
||
|
|
- then
|
||
|
|
- hname=_$ibase
|
||
|
|
- /bin/rm ${execname}$hname
|
||
|
|
- fi
|
||
|
|
- # if local directory used, the remote machine
|
||
|
|
- # deletes the executable
|
||
|
|
- if test ${dirstatus[$counter]} = "local"
|
||
|
|
- then
|
||
|
|
- $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
|
||
|
|
- fi
|
||
|
|
+ DIR1=$workdir
|
||
|
|
fi
|
||
|
|
- done
|
||
|
|
- fi
|
||
|
|
+ # if an incompatible host uses shared directory,
|
||
|
|
+ # then the root machine deletes the executable
|
||
|
|
+ if test ${dirstatus[$counter]} = "shared" -a ${compstatus[$counter]} = "no"
|
||
|
|
+ then
|
||
|
|
+ hname=_$ibase
|
||
|
|
+ /bin/rm ${execname}$hname
|
||
|
|
+ fi
|
||
|
|
+ # if local directory used, the remote machine
|
||
|
|
+ # deletes the executable
|
||
|
|
+ if test ${dirstatus[$counter]} = "local"
|
||
|
|
+ then
|
||
|
|
+ $RSH $i /bin/rm $DIR1/${execname} 2>/dev/null
|
||
|
|
+ fi
|
||
|
|
+ fi
|
||
|
|
+ done
|
||
|
|
fi
|
||
|
|
fi
|
||
|
|
+fi
|
||
|
|
fi
|
||
|
|
else
|
||
|
|
#dllrun >0
|
||
|
|
if test $cpdll = yes; then
|
||
|
|
- filename=`basename $usersubname .f`
|
||
|
|
+ filename=$usernoext
|
||
|
|
/bin/cp $DIRJOB/$marcdll $DIRJOB/${filename}_$marcdll 2>/dev/null
|
||
|
|
fi
|
||
|
|
if test $rmdll = yes;then
|