fr/fr_env/lib/python3.8/site-packages/networkx/conftest.py

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2021-02-17 12:26:31 +05:30
import pytest
import networkx
import sys
import warnings
def pytest_addoption(parser):
parser.addoption(
"--runslow", action="store_true", default=False, help="run slow tests"
)
def pytest_configure(config):
config.addinivalue_line("markers", "slow: mark test as slow to run")
def pytest_collection_modifyitems(config, items):
if config.getoption("--runslow"):
# --runslow given in cli: do not skip slow tests
return
skip_slow = pytest.mark.skip(reason="need --runslow option to run")
for item in items:
if "slow" in item.keywords:
item.add_marker(skip_slow)
# TODO: The warnings below need to be dealt with, but for now we silence them.
@pytest.fixture(autouse=True)
def set_warnings():
warnings.filterwarnings(
"ignore",
category=DeprecationWarning,
message="literal_stringizer is deprecated*",
)
warnings.filterwarnings(
"ignore",
category=DeprecationWarning,
message="literal_destringizer is deprecated*",
)
warnings.filterwarnings(
"ignore", category=DeprecationWarning, message="is_string_like is deprecated*"
)
warnings.filterwarnings(
"ignore", category=DeprecationWarning, message="make_str is deprecated*"
)
warnings.filterwarnings(
"ignore",
category=DeprecationWarning,
message="context manager reversed is deprecated*",
)
warnings.filterwarnings(
"ignore",
category=DeprecationWarning,
message="This will return a generator in 3.0*",
)
warnings.filterwarnings(
"ignore", category=DeprecationWarning, message="betweenness_centrality_source*",
)
warnings.filterwarnings(
"ignore", category=DeprecationWarning, message="edge_betweeness*",
)
warnings.filterwarnings(
"ignore",
category=PendingDeprecationWarning,
message="the matrix subclass is not the recommended way*",
)
@pytest.fixture(autouse=True)
def add_nx(doctest_namespace):
doctest_namespace["nx"] = networkx
# What dependencies are installed?
try:
import numpy
has_numpy = True
except ImportError:
has_numpy = False
try:
import scipy
has_scipy = True
except ImportError:
has_scipy = False
try:
import matplotlib
has_matplotlib = True
except ImportError:
has_matplotlib = False
try:
import pandas
has_pandas = True
except ImportError:
has_pandas = False
try:
import pygraphviz
has_pygraphviz = True
except ImportError:
has_pygraphviz = False
try:
import yaml
has_yaml = True
except ImportError:
has_yaml = False
try:
import pydot
has_pydot = True
except ImportError:
has_pydot = False
try:
import ogr
has_ogr = True
except ImportError:
has_ogr = False
# List of files that pytest should ignore
collect_ignore = []
needs_numpy = [
"algorithms/centrality/current_flow_closeness.py",
"algorithms/node_classification/__init__.py",
"algorithms/non_randomness.py",
"algorithms/shortest_paths/dense.py",
"linalg/bethehessianmatrix.py",
"linalg/laplacianmatrix.py",
"utils/misc.py",
]
needs_scipy = [
"algorithms/assortativity/correlation.py",
"algorithms/assortativity/mixing.py",
"algorithms/assortativity/pairs.py",
"algorithms/bipartite/matrix.py",
"algorithms/bipartite/spectral.py",
"algorithms/centrality/current_flow_betweenness.py",
"algorithms/centrality/current_flow_betweenness_subset.py",
"algorithms/centrality/eigenvector.py",
"algorithms/centrality/katz.py",
"algorithms/centrality/second_order.py",
"algorithms/centrality/subgraph_alg.py",
"algorithms/communicability_alg.py",
"algorithms/link_analysis/hits_alg.py",
"algorithms/link_analysis/pagerank_alg.py",
"algorithms/node_classification/hmn.py",
"algorithms/node_classification/lgc.py",
"algorithms/similarity.py",
"convert_matrix.py",
"drawing/layout.py",
"generators/spectral_graph_forge.py",
"linalg/algebraicconnectivity.py",
"linalg/attrmatrix.py",
"linalg/graphmatrix.py",
"linalg/modularitymatrix.py",
"linalg/spectrum.py",
"utils/rcm.py",
]
needs_matplotlib = ["drawing/nx_pylab.py"]
needs_pandas = ["convert_matrix.py"]
needs_yaml = ["readwrite/nx_yaml.py"]
needs_pygraphviz = ["drawing/nx_agraph.py"]
needs_pydot = ["drawing/nx_pydot.py"]
needs_ogr = ["readwrite/nx_shp.py"]
if not has_numpy:
collect_ignore += needs_numpy
if not has_scipy:
collect_ignore += needs_scipy
if not has_matplotlib:
collect_ignore += needs_matplotlib
if not has_pandas:
collect_ignore += needs_pandas
if not has_yaml:
collect_ignore += needs_yaml
if not has_pygraphviz:
collect_ignore += needs_pygraphviz
if not has_pydot:
collect_ignore += needs_pydot
if not has_ogr:
collect_ignore += needs_ogr
# FIXME: This is to avoid errors on AppVeyor
if sys.platform.startswith("win"):
collect_ignore += ["readwrite/graph6.py", "readwrite/sparse6.py"]