170010030
/
fr
forked from 170010011/fr
1
0
Fork 0
Code Issues Pull Requests Projects Releases Wiki Activity
fr/fr_env/lib/python3.8/site-packages/pandas/_testing.py

3108 lines
94 KiB
Python
Raw Permalink Normal View History

tried svm
2021-03-02 18:34:59 +05:30
import bz2
from collections import Counter
from contextlib import contextmanager
from datetime import datetime
from functools import wraps
import gzip
import operator
import os
from pathlib import Path
import random
import re
from shutil import rmtree
import string
import tempfile
from typing import IO, Any, Callable, ContextManager, List, Optional, Type, Union, cast
import warnings
import zipfile
import numpy as np
from numpy.random import rand, randn
from pandas._config.localization import ( # noqa:F401
can_set_locale,
get_locales,
set_locale,
)
from pandas._libs.lib import no_default
import pandas._libs.testing as _testing
from pandas._typing import Dtype, FilePathOrBuffer, FrameOrSeries
from pandas.compat import get_lzma_file, import_lzma
from pandas.core.dtypes.common import (
is_bool,
is_categorical_dtype,
is_datetime64_dtype,
is_datetime64tz_dtype,
is_extension_array_dtype,
is_interval_dtype,
is_number,
is_numeric_dtype,
is_period_dtype,
is_sequence,
is_timedelta64_dtype,
needs_i8_conversion,
)
from pandas.core.dtypes.missing import array_equivalent
import pandas as pd
from pandas import (
Categorical,
CategoricalIndex,
DataFrame,
DatetimeIndex,
Index,
IntervalIndex,
MultiIndex,
RangeIndex,
Series,
bdate_range,
)
from pandas.core.algorithms import safe_sort, take_1d
from pandas.core.arrays import (
DatetimeArray,
ExtensionArray,
IntervalArray,
PeriodArray,
TimedeltaArray,
period_array,
)
from pandas.core.arrays.datetimelike import DatetimeLikeArrayMixin
from pandas.io.common import urlopen
from pandas.io.formats.printing import pprint_thing
lzma = import_lzma()
_N = 30
_K = 4
_RAISE_NETWORK_ERROR_DEFAULT = False
UNSIGNED_INT_DTYPES: List[Dtype] = ["uint8", "uint16", "uint32", "uint64"]
UNSIGNED_EA_INT_DTYPES: List[Dtype] = ["UInt8", "UInt16", "UInt32", "UInt64"]
SIGNED_INT_DTYPES: List[Dtype] = [int, "int8", "int16", "int32", "int64"]
SIGNED_EA_INT_DTYPES: List[Dtype] = ["Int8", "Int16", "Int32", "Int64"]
ALL_INT_DTYPES = UNSIGNED_INT_DTYPES + SIGNED_INT_DTYPES
ALL_EA_INT_DTYPES = UNSIGNED_EA_INT_DTYPES + SIGNED_EA_INT_DTYPES
FLOAT_DTYPES: List[Dtype] = [float, "float32", "float64"]
FLOAT_EA_DTYPES: List[Dtype] = ["Float32", "Float64"]
COMPLEX_DTYPES: List[Dtype] = [complex, "complex64", "complex128"]
STRING_DTYPES: List[Dtype] = [str, "str", "U"]
DATETIME64_DTYPES: List[Dtype] = ["datetime64[ns]", "M8[ns]"]
TIMEDELTA64_DTYPES: List[Dtype] = ["timedelta64[ns]", "m8[ns]"]
BOOL_DTYPES = [bool, "bool"]
BYTES_DTYPES = [bytes, "bytes"]
OBJECT_DTYPES = [object, "object"]
ALL_REAL_DTYPES = FLOAT_DTYPES + ALL_INT_DTYPES
ALL_NUMPY_DTYPES = (
ALL_REAL_DTYPES
+ COMPLEX_DTYPES
+ STRING_DTYPES
+ DATETIME64_DTYPES
+ TIMEDELTA64_DTYPES
+ BOOL_DTYPES
+ OBJECT_DTYPES
+ BYTES_DTYPES
)
NULL_OBJECTS = [None, np.nan, pd.NaT, float("nan"), pd.NA]
# set testing_mode
_testing_mode_warnings = (DeprecationWarning, ResourceWarning)
def set_testing_mode():
# set the testing mode filters
testing_mode = os.environ.get("PANDAS_TESTING_MODE", "None")
if "deprecate" in testing_mode:
# pandas\_testing.py:119: error: Argument 2 to "simplefilter" has
# incompatible type "Tuple[Type[DeprecationWarning],
# Type[ResourceWarning]]"; expected "Type[Warning]"
warnings.simplefilter(
"always", _testing_mode_warnings # type: ignore[arg-type]
)
def reset_testing_mode():
# reset the testing mode filters
testing_mode = os.environ.get("PANDAS_TESTING_MODE", "None")
if "deprecate" in testing_mode:
# pandas\_testing.py:126: error: Argument 2 to "simplefilter" has
# incompatible type "Tuple[Type[DeprecationWarning],
# Type[ResourceWarning]]"; expected "Type[Warning]"
warnings.simplefilter(
"ignore", _testing_mode_warnings # type: ignore[arg-type]
)
set_testing_mode()
def reset_display_options():
"""
Reset the display options for printing and representing objects.
"""
pd.reset_option("^display.", silent=True)
def round_trip_pickle(
obj: Any, path: Optional[FilePathOrBuffer] = None
) -> FrameOrSeries:
"""
Pickle an object and then read it again.
Parameters
----------
obj : any object
The object to pickle and then re-read.
path : str, path object or file-like object, default None
The path where the pickled object is written and then read.
Returns
-------
pandas object
The original object that was pickled and then re-read.
"""
_path = path
if _path is None:
_path = f"__{rands(10)}__.pickle"
with ensure_clean(_path) as temp_path:
pd.to_pickle(obj, temp_path)
return pd.read_pickle(temp_path)
def round_trip_pathlib(writer, reader, path: Optional[str] = None):
"""
Write an object to file specified by a pathlib.Path and read it back
Parameters
----------
writer : callable bound to pandas object
IO writing function (e.g. DataFrame.to_csv )
reader : callable
IO reading function (e.g. pd.read_csv )
path : str, default None
The path where the object is written and then read.
Returns
-------
pandas object
The original object that was serialized and then re-read.
"""
import pytest
Path = pytest.importorskip("pathlib").Path
if path is None:
path = "___pathlib___"
with ensure_clean(path) as path:
writer(Path(path))
obj = reader(Path(path))
return obj
def round_trip_localpath(writer, reader, path: Optional[str] = None):
"""
Write an object to file specified by a py.path LocalPath and read it back.
Parameters
----------
writer : callable bound to pandas object
IO writing function (e.g. DataFrame.to_csv )
reader : callable
IO reading function (e.g. pd.read_csv )
path : str, default None
The path where the object is written and then read.
Returns
-------
pandas object
The original object that was serialized and then re-read.
"""
import pytest
LocalPath = pytest.importorskip("py.path").local
if path is None:
path = "___localpath___"
with ensure_clean(path) as path:
writer(LocalPath(path))
obj = reader(LocalPath(path))
return obj
@contextmanager
def decompress_file(path, compression):
"""
Open a compressed file and return a file object.
Parameters
----------
path : str
The path where the file is read from.
compression : {'gzip', 'bz2', 'zip', 'xz', None}
Name of the decompression to use
Returns
-------
file object
"""
if compression is None:
f = open(path, "rb")
elif compression == "gzip":
# pandas\_testing.py:243: error: Incompatible types in assignment
# (expression has type "IO[Any]", variable has type "BinaryIO")
f = gzip.open(path, "rb") # type: ignore[assignment]
elif compression == "bz2":
# pandas\_testing.py:245: error: Incompatible types in assignment
# (expression has type "BZ2File", variable has type "BinaryIO")
f = bz2.BZ2File(path, "rb") # type: ignore[assignment]
elif compression == "xz":
f = get_lzma_file(lzma)(path, "rb")
elif compression == "zip":
zip_file = zipfile.ZipFile(path)
zip_names = zip_file.namelist()
if len(zip_names) == 1:
# pandas\_testing.py:252: error: Incompatible types in assignment
# (expression has type "IO[bytes]", variable has type "BinaryIO")
f = zip_file.open(zip_names.pop()) # type: ignore[assignment]
else:
raise ValueError(f"ZIP file {path} error. Only one file per ZIP.")
else:
raise ValueError(f"Unrecognized compression type: {compression}")
try:
yield f
finally:
f.close()
if compression == "zip":
zip_file.close()
def write_to_compressed(compression, path, data, dest="test"):
"""
Write data to a compressed file.
Parameters
----------
compression : {'gzip', 'bz2', 'zip', 'xz'}
The compression type to use.
path : str
The file path to write the data.
data : str
The data to write.
dest : str, default "test"
The destination file (for ZIP only)
Raises
------
ValueError : An invalid compression value was passed in.
"""
if compression == "zip":
compress_method = zipfile.ZipFile
elif compression == "gzip":
# pandas\_testing.py:288: error: Incompatible types in assignment
# (expression has type "Type[GzipFile]", variable has type
# "Type[ZipFile]")
compress_method = gzip.GzipFile # type: ignore[assignment]
elif compression == "bz2":
# pandas\_testing.py:290: error: Incompatible types in assignment
# (expression has type "Type[BZ2File]", variable has type
# "Type[ZipFile]")
compress_method = bz2.BZ2File # type: ignore[assignment]
elif compression == "xz":
compress_method = get_lzma_file(lzma)
else:
raise ValueError(f"Unrecognized compression type: {compression}")
if compression == "zip":
mode = "w"
args = (dest, data)
method = "writestr"
else:
mode = "wb"
# pandas\_testing.py:302: error: Incompatible types in assignment
# (expression has type "Tuple[Any]", variable has type "Tuple[Any,
# Any]")
args = (data,) # type: ignore[assignment]
method = "write"
with compress_method(path, mode=mode) as f:
getattr(f, method)(*args)
def _get_tol_from_less_precise(check_less_precise: Union[bool, int]) -> float:
"""
Return the tolerance equivalent to the deprecated `check_less_precise`
parameter.
Parameters
----------
check_less_precise : bool or int
Returns
-------
float
Tolerance to be used as relative/absolute tolerance.
Examples
--------
>>> # Using check_less_precise as a bool:
>>> _get_tol_from_less_precise(False)
0.5e-5
>>> _get_tol_from_less_precise(True)
0.5e-3
>>> # Using check_less_precise as an int representing the decimal
>>> # tolerance intended:
>>> _get_tol_from_less_precise(2)
0.5e-2
>>> _get_tol_from_less_precise(8)
0.5e-8
"""
if isinstance(check_less_precise, bool):
if check_less_precise:
# 3-digit tolerance
return 0.5e-3
else:
# 5-digit tolerance
return 0.5e-5
else:
# Equivalent to setting checking_less_precise=<decimals>
return 0.5 * 10 ** -check_less_precise
def assert_almost_equal(
left,
right,
check_dtype: Union[bool, str] = "equiv",
check_less_precise: Union[bool, int] = no_default,
rtol: float = 1.0e-5,
atol: float = 1.0e-8,
**kwargs,
):
"""
Check that the left and right objects are approximately equal.
By approximately equal, we refer to objects that are numbers or that
contain numbers which may be equivalent to specific levels of precision.
Parameters
----------
left : object
right : object
check_dtype : bool or {'equiv'}, default 'equiv'
Check dtype if both a and b are the same type. If 'equiv' is passed in,
then `RangeIndex` and `Int64Index` are also considered equivalent
when doing type checking.
check_less_precise : bool or int, default False
Specify comparison precision. 5 digits (False) or 3 digits (True)
after decimal points are compared. If int, then specify the number
of digits to compare.
When comparing two numbers, if the first number has magnitude less
than 1e-5, we compare the two numbers directly and check whether
they are equivalent within the specified precision. Otherwise, we
compare the **ratio** of the second number to the first number and
check whether it is equivalent to 1 within the specified precision.
.. deprecated:: 1.1.0
Use `rtol` and `atol` instead to define relative/absolute
tolerance, respectively. Similar to :func:`math.isclose`.
rtol : float, default 1e-5
Relative tolerance.
.. versionadded:: 1.1.0
atol : float, default 1e-8
Absolute tolerance.
.. versionadded:: 1.1.0
"""
if check_less_precise is not no_default:
warnings.warn(
"The 'check_less_precise' keyword in testing.assert_*_equal "
"is deprecated and will be removed in a future version. "
"You can stop passing 'check_less_precise' to silence this warning.",
FutureWarning,
stacklevel=2,
)
rtol = atol = _get_tol_from_less_precise(check_less_precise)
if isinstance(left, pd.Index):
assert_index_equal(
left,
right,
check_exact=False,
exact=check_dtype,
rtol=rtol,
atol=atol,
**kwargs,
)
elif isinstance(left, pd.Series):
assert_series_equal(
left,
right,
check_exact=False,
check_dtype=check_dtype,
rtol=rtol,
atol=atol,
**kwargs,
)
elif isinstance(left, pd.DataFrame):
assert_frame_equal(
left,
right,
check_exact=False,
check_dtype=check_dtype,
rtol=rtol,
atol=atol,
**kwargs,
)
else:
# Other sequences.
if check_dtype:
if is_number(left) and is_number(right):
# Do not compare numeric classes, like np.float64 and float.
pass
elif is_bool(left) and is_bool(right):
# Do not compare bool classes, like np.bool_ and bool.
pass
else:
if isinstance(left, np.ndarray) or isinstance(right, np.ndarray):
obj = "numpy array"
else:
obj = "Input"
assert_class_equal(left, right, obj=obj)
_testing.assert_almost_equal(
left, right, check_dtype=check_dtype, rtol=rtol, atol=atol, **kwargs
)
def _check_isinstance(left, right, cls):
"""
Helper method for our assert_* methods that ensures that
the two objects being compared have the right type before
proceeding with the comparison.
Parameters
----------
left : The first object being compared.
right : The second object being compared.
cls : The class type to check against.
Raises
------
AssertionError : Either `left` or `right` is not an instance of `cls`.
"""
cls_name = cls.__name__
if not isinstance(left, cls):
raise AssertionError(
f"{cls_name} Expected type {cls}, found {type(left)} instead"
)
if not isinstance(right, cls):
raise AssertionError(
f"{cls_name} Expected type {cls}, found {type(right)} instead"
)
def assert_dict_equal(left, right, compare_keys: bool = True):
_check_isinstance(left, right, dict)
_testing.assert_dict_equal(left, right, compare_keys=compare_keys)
def randbool(size=(), p: float = 0.5):
return rand(*size) <= p
RANDS_CHARS = np.array(list(string.ascii_letters + string.digits), dtype=(np.str_, 1))
RANDU_CHARS = np.array(
list("".join(map(chr, range(1488, 1488 + 26))) + string.digits),
dtype=(np.unicode_, 1),
)
def rands_array(nchars, size, dtype="O"):
"""
Generate an array of byte strings.
"""
retval = (
np.random.choice(RANDS_CHARS, size=nchars * np.prod(size))
.view((np.str_, nchars))
.reshape(size)
)
return retval.astype(dtype)
def randu_array(nchars, size, dtype="O"):
"""
Generate an array of unicode strings.
"""
retval = (
np.random.choice(RANDU_CHARS, size=nchars * np.prod(size))
.view((np.unicode_, nchars))
.reshape(size)
)
return retval.astype(dtype)
def rands(nchars):
"""
Generate one random byte string.
See `rands_array` if you want to create an array of random strings.
"""
return "".join(np.random.choice(RANDS_CHARS, nchars))
def close(fignum=None):
from matplotlib.pyplot import close as _close, get_fignums
if fignum is None:
for fignum in get_fignums():
_close(fignum)
else:
_close(fignum)
# -----------------------------------------------------------------------------
# contextmanager to ensure the file cleanup
@contextmanager
def ensure_clean(filename=None, return_filelike: bool = False, **kwargs: Any):
"""
Gets a temporary path and agrees to remove on close.
This implementation does not use tempfile.mkstemp to avoid having a file handle.
If the code using the returned path wants to delete the file itself, windows
requires that no program has a file handle to it.
Parameters
----------
filename : str (optional)
suffix of the created file.
return_filelike : bool (default False)
if True, returns a file-like which is *always* cleaned. Necessary for
savefig and other functions which want to append extensions.
**kwargs
Additional keywords are passed to open().
"""
folder = Path(tempfile.gettempdir())
if filename is None:
filename = ""
filename = (
"".join(random.choices(string.ascii_letters + string.digits, k=30)) + filename
)
path = folder / filename
path.touch()
handle_or_str: Union[str, IO] = str(path)
if return_filelike:
kwargs.setdefault("mode", "w+b")
handle_or_str = open(path, **kwargs)
try:
yield handle_or_str
finally:
if not isinstance(handle_or_str, str):
handle_or_str.close()
if path.is_file():
path.unlink()
@contextmanager
def ensure_clean_dir():
"""
Get a temporary directory path and agrees to remove on close.
Yields
------
Temporary directory path
"""
directory_name = tempfile.mkdtemp(suffix="")
try:
yield directory_name
finally:
try:
rmtree(directory_name)
except OSError:
pass
@contextmanager
def ensure_safe_environment_variables():
"""
Get a context manager to safely set environment variables
All changes will be undone on close, hence environment variables set
within this contextmanager will neither persist nor change global state.
"""
saved_environ = dict(os.environ)
try:
yield
finally:
os.environ.clear()
os.environ.update(saved_environ)
# -----------------------------------------------------------------------------
# Comparators
def equalContents(arr1, arr2) -> bool:
"""
Checks if the set of unique elements of arr1 and arr2 are equivalent.
"""
return frozenset(arr1) == frozenset(arr2)
def assert_index_equal(
left: Index,
right: Index,
exact: Union[bool, str] = "equiv",
check_names: bool = True,
check_less_precise: Union[bool, int] = no_default,
check_exact: bool = True,
check_categorical: bool = True,
check_order: bool = True,
rtol: float = 1.0e-5,
atol: float = 1.0e-8,
obj: str = "Index",
) -> None:
"""
Check that left and right Index are equal.
Parameters
----------
left : Index
right : Index
exact : bool or {'equiv'}, default 'equiv'
Whether to check the Index class, dtype and inferred_type
are identical. If 'equiv', then RangeIndex can be substituted for
Int64Index as well.
check_names : bool, default True
Whether to check the names attribute.
check_less_precise : bool or int, default False
Specify comparison precision. Only used when check_exact is False.
5 digits (False) or 3 digits (True) after decimal points are compared.
If int, then specify the digits to compare.
.. deprecated:: 1.1.0
Use `rtol` and `atol` instead to define relative/absolute
tolerance, respectively. Similar to :func:`math.isclose`.
check_exact : bool, default True
Whether to compare number exactly.
check_categorical : bool, default True
Whether to compare internal Categorical exactly.
check_order : bool, default True
Whether to compare the order of index entries as well as their values.
If True, both indexes must contain the same elements, in the same order.
If False, both indexes must contain the same elements, but in any order.
.. versionadded:: 1.2.0
rtol : float, default 1e-5
Relative tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
atol : float, default 1e-8
Absolute tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
obj : str, default 'Index'
Specify object name being compared, internally used to show appropriate
assertion message.
Examples
--------
>>> from pandas.testing import assert_index_equal
>>> a = pd.Index([1, 2, 3])
>>> b = pd.Index([1, 2, 3])
>>> assert_index_equal(a, b)
"""
__tracebackhide__ = True
def _check_types(left, right, obj="Index"):
if exact:
assert_class_equal(left, right, exact=exact, obj=obj)
# Skip exact dtype checking when `check_categorical` is False
if check_categorical:
assert_attr_equal("dtype", left, right, obj=obj)
# allow string-like to have different inferred_types
if left.inferred_type in ("string"):
assert right.inferred_type in ("string")
else:
assert_attr_equal("inferred_type", left, right, obj=obj)
def _get_ilevel_values(index, level):
# accept level number only
unique = index.levels[level]
level_codes = index.codes[level]
filled = take_1d(unique._values, level_codes, fill_value=unique._na_value)
return unique._shallow_copy(filled, name=index.names[level])
if check_less_precise is not no_default:
warnings.warn(
"The 'check_less_precise' keyword in testing.assert_*_equal "
"is deprecated and will be removed in a future version. "
"You can stop passing 'check_less_precise' to silence this warning.",
FutureWarning,
stacklevel=2,
)
rtol = atol = _get_tol_from_less_precise(check_less_precise)
# instance validation
_check_isinstance(left, right, Index)
# class / dtype comparison
_check_types(left, right, obj=obj)
# level comparison
if left.nlevels != right.nlevels:
msg1 = f"{obj} levels are different"
msg2 = f"{left.nlevels}, {left}"
msg3 = f"{right.nlevels}, {right}"
raise_assert_detail(obj, msg1, msg2, msg3)
# length comparison
if len(left) != len(right):
msg1 = f"{obj} length are different"
msg2 = f"{len(left)}, {left}"
msg3 = f"{len(right)}, {right}"
raise_assert_detail(obj, msg1, msg2, msg3)
# If order doesn't matter then sort the index entries
if not check_order:
left = Index(safe_sort(left))
right = Index(safe_sort(right))
# MultiIndex special comparison for little-friendly error messages
if left.nlevels > 1:
left = cast(MultiIndex, left)
right = cast(MultiIndex, right)
for level in range(left.nlevels):
# cannot use get_level_values here because it can change dtype
llevel = _get_ilevel_values(left, level)
rlevel = _get_ilevel_values(right, level)
lobj = f"MultiIndex level [{level}]"
assert_index_equal(
llevel,
rlevel,
exact=exact,
check_names=check_names,
check_exact=check_exact,
rtol=rtol,
atol=atol,
obj=lobj,
)
# get_level_values may change dtype
_check_types(left.levels[level], right.levels[level], obj=obj)
# skip exact index checking when `check_categorical` is False
if check_exact and check_categorical:
if not left.equals(right):
diff = np.sum((left.values != right.values).astype(int)) * 100.0 / len(left)
msg = f"{obj} values are different ({np.round(diff, 5)} %)"
raise_assert_detail(obj, msg, left, right)
else:
_testing.assert_almost_equal(
left.values,
right.values,
rtol=rtol,
atol=atol,
check_dtype=exact,
obj=obj,
lobj=left,
robj=right,
)
# metadata comparison
if check_names:
assert_attr_equal("names", left, right, obj=obj)
if isinstance(left, pd.PeriodIndex) or isinstance(right, pd.PeriodIndex):
assert_attr_equal("freq", left, right, obj=obj)
if isinstance(left, pd.IntervalIndex) or isinstance(right, pd.IntervalIndex):
assert_interval_array_equal(left._values, right._values)
if check_categorical:
if is_categorical_dtype(left.dtype) or is_categorical_dtype(right.dtype):
assert_categorical_equal(left._values, right._values, obj=f"{obj} category")
def assert_class_equal(left, right, exact: Union[bool, str] = True, obj="Input"):
"""
Checks classes are equal.
"""
__tracebackhide__ = True
def repr_class(x):
if isinstance(x, Index):
# return Index as it is to include values in the error message
return x
return type(x).__name__
if exact == "equiv":
if type(left) != type(right):
# allow equivalence of Int64Index/RangeIndex
types = {type(left).__name__, type(right).__name__}
if len(types - {"Int64Index", "RangeIndex"}):
msg = f"{obj} classes are not equivalent"
raise_assert_detail(obj, msg, repr_class(left), repr_class(right))
elif exact:
if type(left) != type(right):
msg = f"{obj} classes are different"
raise_assert_detail(obj, msg, repr_class(left), repr_class(right))
def assert_attr_equal(attr: str, left, right, obj: str = "Attributes"):
"""
Check attributes are equal. Both objects must have attribute.
Parameters
----------
attr : str
Attribute name being compared.
left : object
right : object
obj : str, default 'Attributes'
Specify object name being compared, internally used to show appropriate
assertion message
"""
__tracebackhide__ = True
left_attr = getattr(left, attr)
right_attr = getattr(right, attr)
if left_attr is right_attr:
return True
elif (
is_number(left_attr)
and np.isnan(left_attr)
and is_number(right_attr)
and np.isnan(right_attr)
):
# np.nan
return True
try:
result = left_attr == right_attr
except TypeError:
# datetimetz on rhs may raise TypeError
result = False
if not isinstance(result, bool):
result = result.all()
if result:
return True
else:
msg = f'Attribute "{attr}" are different'
raise_assert_detail(obj, msg, left_attr, right_attr)
def assert_is_valid_plot_return_object(objs):
import matplotlib.pyplot as plt
if isinstance(objs, (pd.Series, np.ndarray)):
for el in objs.ravel():
msg = (
"one of 'objs' is not a matplotlib Axes instance, "
f"type encountered {repr(type(el).__name__)}"
)
assert isinstance(el, (plt.Axes, dict)), msg
else:
msg = (
"objs is neither an ndarray of Artist instances nor a single "
"ArtistArtist instance, tuple, or dict, 'objs' is a "
f"{repr(type(objs).__name__)}"
)
assert isinstance(objs, (plt.Artist, tuple, dict)), msg
def assert_is_sorted(seq):
"""Assert that the sequence is sorted."""
if isinstance(seq, (Index, Series)):
seq = seq.values
# sorting does not change precisions
assert_numpy_array_equal(seq, np.sort(np.array(seq)))
def assert_categorical_equal(
left, right, check_dtype=True, check_category_order=True, obj="Categorical"
):
"""
Test that Categoricals are equivalent.
Parameters
----------
left : Categorical
right : Categorical
check_dtype : bool, default True
Check that integer dtype of the codes are the same
check_category_order : bool, default True
Whether the order of the categories should be compared, which
implies identical integer codes. If False, only the resulting
values are compared. The ordered attribute is
checked regardless.
obj : str, default 'Categorical'
Specify object name being compared, internally used to show appropriate
assertion message
"""
_check_isinstance(left, right, Categorical)
if check_category_order:
assert_index_equal(left.categories, right.categories, obj=f"{obj}.categories")
assert_numpy_array_equal(
left.codes, right.codes, check_dtype=check_dtype, obj=f"{obj}.codes"
)
else:
try:
lc = left.categories.sort_values()
rc = right.categories.sort_values()
except TypeError:
# e.g. '<' not supported between instances of 'int' and 'str'
lc, rc = left.categories, right.categories
assert_index_equal(lc, rc, obj=f"{obj}.categories")
assert_index_equal(
left.categories.take(left.codes),
right.categories.take(right.codes),
obj=f"{obj}.values",
)
assert_attr_equal("ordered", left, right, obj=obj)
def assert_interval_array_equal(left, right, exact="equiv", obj="IntervalArray"):
"""
Test that two IntervalArrays are equivalent.
Parameters
----------
left, right : IntervalArray
The IntervalArrays to compare.
exact : bool or {'equiv'}, default 'equiv'
Whether to check the Index class, dtype and inferred_type
are identical. If 'equiv', then RangeIndex can be substituted for
Int64Index as well.
obj : str, default 'IntervalArray'
Specify object name being compared, internally used to show appropriate
assertion message
"""
_check_isinstance(left, right, IntervalArray)
kwargs = {}
if left._left.dtype.kind in ["m", "M"]:
# We have a DatetimeArray or TimedeltaArray
kwargs["check_freq"] = False
assert_equal(left._left, right._left, obj=f"{obj}.left", **kwargs)
assert_equal(left._right, right._right, obj=f"{obj}.left", **kwargs)
assert_attr_equal("closed", left, right, obj=obj)
def assert_period_array_equal(left, right, obj="PeriodArray"):
_check_isinstance(left, right, PeriodArray)
assert_numpy_array_equal(left._data, right._data, obj=f"{obj}._data")
assert_attr_equal("freq", left, right, obj=obj)
def assert_datetime_array_equal(left, right, obj="DatetimeArray", check_freq=True):
__tracebackhide__ = True
_check_isinstance(left, right, DatetimeArray)
assert_numpy_array_equal(left._data, right._data, obj=f"{obj}._data")
if check_freq:
assert_attr_equal("freq", left, right, obj=obj)
assert_attr_equal("tz", left, right, obj=obj)
def assert_timedelta_array_equal(left, right, obj="TimedeltaArray", check_freq=True):
__tracebackhide__ = True
_check_isinstance(left, right, TimedeltaArray)
assert_numpy_array_equal(left._data, right._data, obj=f"{obj}._data")
if check_freq:
assert_attr_equal("freq", left, right, obj=obj)
def raise_assert_detail(obj, message, left, right, diff=None, index_values=None):
__tracebackhide__ = True
msg = f"""{obj} are different
{message}"""
if isinstance(index_values, np.ndarray):
msg += f"\n[index]: {pprint_thing(index_values)}"
if isinstance(left, np.ndarray):
left = pprint_thing(left)
elif is_categorical_dtype(left):
left = repr(left)
if isinstance(right, np.ndarray):
right = pprint_thing(right)
elif is_categorical_dtype(right):
right = repr(right)
msg += f"""
[left]: {left}
[right]: {right}"""
if diff is not None:
msg += f"\n[diff]: {diff}"
raise AssertionError(msg)
def assert_numpy_array_equal(
left,
right,
strict_nan=False,
check_dtype=True,
err_msg=None,
check_same=None,
obj="numpy array",
index_values=None,
):
"""
Check that 'np.ndarray' is equivalent.
Parameters
----------
left, right : numpy.ndarray or iterable
The two arrays to be compared.
strict_nan : bool, default False
If True, consider NaN and None to be different.
check_dtype : bool, default True
Check dtype if both a and b are np.ndarray.
err_msg : str, default None
If provided, used as assertion message.
check_same : None|'copy'|'same', default None
Ensure left and right refer/do not refer to the same memory area.
obj : str, default 'numpy array'
Specify object name being compared, internally used to show appropriate
assertion message.
index_values : numpy.ndarray, default None
optional index (shared by both left and right), used in output.
"""
__tracebackhide__ = True
# instance validation
# Show a detailed error message when classes are different
assert_class_equal(left, right, obj=obj)
# both classes must be an np.ndarray
_check_isinstance(left, right, np.ndarray)
def _get_base(obj):
return obj.base if getattr(obj, "base", None) is not None else obj
left_base = _get_base(left)
right_base = _get_base(right)
if check_same == "same":
if left_base is not right_base:
raise AssertionError(f"{repr(left_base)} is not {repr(right_base)}")
elif check_same == "copy":
if left_base is right_base:
raise AssertionError(f"{repr(left_base)} is {repr(right_base)}")
def _raise(left, right, err_msg):
if err_msg is None:
if left.shape != right.shape:
raise_assert_detail(
obj, f"{obj} shapes are different", left.shape, right.shape
)
diff = 0
for left_arr, right_arr in zip(left, right):
# count up differences
if not array_equivalent(left_arr, right_arr, strict_nan=strict_nan):
diff += 1
diff = diff * 100.0 / left.size
msg = f"{obj} values are different ({np.round(diff, 5)} %)"
raise_assert_detail(obj, msg, left, right, index_values=index_values)
raise AssertionError(err_msg)
# compare shape and values
if not array_equivalent(left, right, strict_nan=strict_nan):
_raise(left, right, err_msg)
if check_dtype:
if isinstance(left, np.ndarray) and isinstance(right, np.ndarray):
assert_attr_equal("dtype", left, right, obj=obj)
def assert_extension_array_equal(
left,
right,
check_dtype=True,
index_values=None,
check_less_precise=no_default,
check_exact=False,
rtol: float = 1.0e-5,
atol: float = 1.0e-8,
):
"""
Check that left and right ExtensionArrays are equal.
Parameters
----------
left, right : ExtensionArray
The two arrays to compare.
check_dtype : bool, default True
Whether to check if the ExtensionArray dtypes are identical.
index_values : numpy.ndarray, default None
Optional index (shared by both left and right), used in output.
check_less_precise : bool or int, default False
Specify comparison precision. Only used when check_exact is False.
5 digits (False) or 3 digits (True) after decimal points are compared.
If int, then specify the digits to compare.
.. deprecated:: 1.1.0
Use `rtol` and `atol` instead to define relative/absolute
tolerance, respectively. Similar to :func:`math.isclose`.
check_exact : bool, default False
Whether to compare number exactly.
rtol : float, default 1e-5
Relative tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
atol : float, default 1e-8
Absolute tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
Notes
-----
Missing values are checked separately from valid values.
A mask of missing values is computed for each and checked to match.
The remaining all-valid values are cast to object dtype and checked.
Examples
--------
>>> from pandas.testing import assert_extension_array_equal
>>> a = pd.Series([1, 2, 3, 4])
>>> b, c = a.array, a.array
>>> assert_extension_array_equal(b, c)
"""
if check_less_precise is not no_default:
warnings.warn(
"The 'check_less_precise' keyword in testing.assert_*_equal "
"is deprecated and will be removed in a future version. "
"You can stop passing 'check_less_precise' to silence this warning.",
FutureWarning,
stacklevel=2,
)
rtol = atol = _get_tol_from_less_precise(check_less_precise)
assert isinstance(left, ExtensionArray), "left is not an ExtensionArray"
assert isinstance(right, ExtensionArray), "right is not an ExtensionArray"
if check_dtype:
assert_attr_equal("dtype", left, right, obj="ExtensionArray")
if (
isinstance(left, DatetimeLikeArrayMixin)
and isinstance(right, DatetimeLikeArrayMixin)
and type(right) == type(left)
):
# Avoid slow object-dtype comparisons
# np.asarray for case where we have a np.MaskedArray
assert_numpy_array_equal(
np.asarray(left.asi8), np.asarray(right.asi8), index_values=index_values
)
return
left_na = np.asarray(left.isna())
right_na = np.asarray(right.isna())
assert_numpy_array_equal(
left_na, right_na, obj="ExtensionArray NA mask", index_values=index_values
)
left_valid = np.asarray(left[~left_na].astype(object))
right_valid = np.asarray(right[~right_na].astype(object))
if check_exact:
assert_numpy_array_equal(
left_valid, right_valid, obj="ExtensionArray", index_values=index_values
)
else:
_testing.assert_almost_equal(
left_valid,
right_valid,
check_dtype=check_dtype,
rtol=rtol,
atol=atol,
obj="ExtensionArray",
index_values=index_values,
)
# This could be refactored to use the NDFrame.equals method
def assert_series_equal(
left,
right,
check_dtype=True,
check_index_type="equiv",
check_series_type=True,
check_less_precise=no_default,
check_names=True,
check_exact=False,
check_datetimelike_compat=False,
check_categorical=True,
check_category_order=True,
check_freq=True,
check_flags=True,
rtol=1.0e-5,
atol=1.0e-8,
obj="Series",
):
"""
Check that left and right Series are equal.
Parameters
----------
left : Series
right : Series
check_dtype : bool, default True
Whether to check the Series dtype is identical.
check_index_type : bool or {'equiv'}, default 'equiv'
Whether to check the Index class, dtype and inferred_type
are identical.
check_series_type : bool, default True
Whether to check the Series class is identical.
check_less_precise : bool or int, default False
Specify comparison precision. Only used when check_exact is False.
5 digits (False) or 3 digits (True) after decimal points are compared.
If int, then specify the digits to compare.
When comparing two numbers, if the first number has magnitude less
than 1e-5, we compare the two numbers directly and check whether
they are equivalent within the specified precision. Otherwise, we
compare the **ratio** of the second number to the first number and
check whether it is equivalent to 1 within the specified precision.
.. deprecated:: 1.1.0
Use `rtol` and `atol` instead to define relative/absolute
tolerance, respectively. Similar to :func:`math.isclose`.
check_names : bool, default True
Whether to check the Series and Index names attribute.
check_exact : bool, default False
Whether to compare number exactly.
check_datetimelike_compat : bool, default False
Compare datetime-like which is comparable ignoring dtype.
check_categorical : bool, default True
Whether to compare internal Categorical exactly.
check_category_order : bool, default True
Whether to compare category order of internal Categoricals.
.. versionadded:: 1.0.2
check_freq : bool, default True
Whether to check the `freq` attribute on a DatetimeIndex or TimedeltaIndex.
.. versionadded:: 1.1.0
check_flags : bool, default True
Whether to check the `flags` attribute.
.. versionadded:: 1.2.0
rtol : float, default 1e-5
Relative tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
atol : float, default 1e-8
Absolute tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
obj : str, default 'Series'
Specify object name being compared, internally used to show appropriate
assertion message.
Examples
--------
>>> from pandas.testing import assert_series_equal
>>> a = pd.Series([1, 2, 3, 4])
>>> b = pd.Series([1, 2, 3, 4])
>>> assert_series_equal(a, b)
"""
__tracebackhide__ = True
if check_less_precise is not no_default:
warnings.warn(
"The 'check_less_precise' keyword in testing.assert_*_equal "
"is deprecated and will be removed in a future version. "
"You can stop passing 'check_less_precise' to silence this warning.",
FutureWarning,
stacklevel=2,
)
rtol = atol = _get_tol_from_less_precise(check_less_precise)
# instance validation
_check_isinstance(left, right, Series)
if check_series_type:
assert_class_equal(left, right, obj=obj)
# length comparison
if len(left) != len(right):
msg1 = f"{len(left)}, {left.index}"
msg2 = f"{len(right)}, {right.index}"
raise_assert_detail(obj, "Series length are different", msg1, msg2)
if check_flags:
assert left.flags == right.flags, f"{repr(left.flags)} != {repr(right.flags)}"
# index comparison
assert_index_equal(
left.index,
right.index,
exact=check_index_type,
check_names=check_names,
check_exact=check_exact,
check_categorical=check_categorical,
rtol=rtol,
atol=atol,
obj=f"{obj}.index",
)
if check_freq and isinstance(left.index, (pd.DatetimeIndex, pd.TimedeltaIndex)):
lidx = left.index
ridx = right.index
assert lidx.freq == ridx.freq, (lidx.freq, ridx.freq)
if check_dtype:
# We want to skip exact dtype checking when `check_categorical`
# is False. We'll still raise if only one is a `Categorical`,
# regardless of `check_categorical`
if (
is_categorical_dtype(left.dtype)
and is_categorical_dtype(right.dtype)
and not check_categorical
):
pass
else:
assert_attr_equal("dtype", left, right, obj=f"Attributes of {obj}")
if check_exact and is_numeric_dtype(left.dtype) and is_numeric_dtype(right.dtype):
left_values = left._values
right_values = right._values
# Only check exact if dtype is numeric
if is_extension_array_dtype(left_values) and is_extension_array_dtype(
right_values
):
assert_extension_array_equal(
left_values,
right_values,
check_dtype=check_dtype,
index_values=np.asarray(left.index),
)
else:
assert_numpy_array_equal(
left_values,
right_values,
check_dtype=check_dtype,
obj=str(obj),
index_values=np.asarray(left.index),
)
elif check_datetimelike_compat and (
needs_i8_conversion(left.dtype) or needs_i8_conversion(right.dtype)
):
# we want to check only if we have compat dtypes
# e.g. integer and M|m are NOT compat, but we can simply check
# the values in that case
# datetimelike may have different objects (e.g. datetime.datetime
# vs Timestamp) but will compare equal
if not Index(left._values).equals(Index(right._values)):
msg = (
f"[datetimelike_compat=True] {left._values} "
f"is not equal to {right._values}."
)
raise AssertionError(msg)
elif is_interval_dtype(left.dtype) and is_interval_dtype(right.dtype):
assert_interval_array_equal(left.array, right.array)
elif is_categorical_dtype(left.dtype) or is_categorical_dtype(right.dtype):
_testing.assert_almost_equal(
left._values,
right._values,
rtol=rtol,
atol=atol,
check_dtype=check_dtype,
obj=str(obj),
index_values=np.asarray(left.index),
)
elif is_extension_array_dtype(left.dtype) and is_extension_array_dtype(right.dtype):
assert_extension_array_equal(
left._values,
right._values,
check_dtype=check_dtype,
index_values=np.asarray(left.index),
)
elif is_extension_array_dtype_and_needs_i8_conversion(
left.dtype, right.dtype
) or is_extension_array_dtype_and_needs_i8_conversion(right.dtype, left.dtype):
assert_extension_array_equal(
left._values,
right._values,
check_dtype=check_dtype,
index_values=np.asarray(left.index),
)
elif needs_i8_conversion(left.dtype) and needs_i8_conversion(right.dtype):
# DatetimeArray or TimedeltaArray
assert_extension_array_equal(
left._values,
right._values,
check_dtype=check_dtype,
index_values=np.asarray(left.index),
)
else:
_testing.assert_almost_equal(
left._values,
right._values,
rtol=rtol,
atol=atol,
check_dtype=check_dtype,
obj=str(obj),
index_values=np.asarray(left.index),
)
# metadata comparison
if check_names:
assert_attr_equal("name", left, right, obj=obj)
if check_categorical:
if is_categorical_dtype(left.dtype) or is_categorical_dtype(right.dtype):
assert_categorical_equal(
left._values,
right._values,
obj=f"{obj} category",
check_category_order=check_category_order,
)
# This could be refactored to use the NDFrame.equals method
def assert_frame_equal(
left,
right,
check_dtype=True,
check_index_type="equiv",
check_column_type="equiv",
check_frame_type=True,
check_less_precise=no_default,
check_names=True,
by_blocks=False,
check_exact=False,
check_datetimelike_compat=False,
check_categorical=True,
check_like=False,
check_freq=True,
check_flags=True,
rtol=1.0e-5,
atol=1.0e-8,
obj="DataFrame",
):
"""
Check that left and right DataFrame are equal.
This function is intended to compare two DataFrames and output any
differences. Is is mostly intended for use in unit tests.
Additional parameters allow varying the strictness of the
equality checks performed.
Parameters
----------
left : DataFrame
First DataFrame to compare.
right : DataFrame
Second DataFrame to compare.
check_dtype : bool, default True
Whether to check the DataFrame dtype is identical.
check_index_type : bool or {'equiv'}, default 'equiv'
Whether to check the Index class, dtype and inferred_type
are identical.
check_column_type : bool or {'equiv'}, default 'equiv'
Whether to check the columns class, dtype and inferred_type
are identical. Is passed as the ``exact`` argument of
:func:`assert_index_equal`.
check_frame_type : bool, default True
Whether to check the DataFrame class is identical.
check_less_precise : bool or int, default False
Specify comparison precision. Only used when check_exact is False.
5 digits (False) or 3 digits (True) after decimal points are compared.
If int, then specify the digits to compare.
When comparing two numbers, if the first number has magnitude less
than 1e-5, we compare the two numbers directly and check whether
they are equivalent within the specified precision. Otherwise, we
compare the **ratio** of the second number to the first number and
check whether it is equivalent to 1 within the specified precision.
.. deprecated:: 1.1.0
Use `rtol` and `atol` instead to define relative/absolute
tolerance, respectively. Similar to :func:`math.isclose`.
check_names : bool, default True
Whether to check that the `names` attribute for both the `index`
and `column` attributes of the DataFrame is identical.
by_blocks : bool, default False
Specify how to compare internal data. If False, compare by columns.
If True, compare by blocks.
check_exact : bool, default False
Whether to compare number exactly.
check_datetimelike_compat : bool, default False
Compare datetime-like which is comparable ignoring dtype.
check_categorical : bool, default True
Whether to compare internal Categorical exactly.
check_like : bool, default False
If True, ignore the order of index & columns.
Note: index labels must match their respective rows
(same as in columns) - same labels must be with the same data.
check_freq : bool, default True
Whether to check the `freq` attribute on a DatetimeIndex or TimedeltaIndex.
.. versionadded:: 1.1.0
check_flags : bool, default True
Whether to check the `flags` attribute.
rtol : float, default 1e-5
Relative tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
atol : float, default 1e-8
Absolute tolerance. Only used when check_exact is False.
.. versionadded:: 1.1.0
obj : str, default 'DataFrame'
Specify object name being compared, internally used to show appropriate
assertion message.
See Also
--------
assert_series_equal : Equivalent method for asserting Series equality.
DataFrame.equals : Check DataFrame equality.
Examples
--------
This example shows comparing two DataFrames that are equal
but with columns of differing dtypes.
>>> from pandas._testing import assert_frame_equal
>>> df1 = pd.DataFrame({'a': [1, 2], 'b': [3, 4]})
>>> df2 = pd.DataFrame({'a': [1, 2], 'b': [3.0, 4.0]})
df1 equals itself.
>>> assert_frame_equal(df1, df1)
df1 differs from df2 as column 'b' is of a different type.
>>> assert_frame_equal(df1, df2)
Traceback (most recent call last):
...
AssertionError: Attributes of DataFrame.iloc[:, 1] (column name="b") are different
Attribute "dtype" are different
[left]: int64
[right]: float64
Ignore differing dtypes in columns with check_dtype.
>>> assert_frame_equal(df1, df2, check_dtype=False)
"""
__tracebackhide__ = True
if check_less_precise is not no_default:
warnings.warn(
"The 'check_less_precise' keyword in testing.assert_*_equal "
"is deprecated and will be removed in a future version. "
"You can stop passing 'check_less_precise' to silence this warning.",
FutureWarning,
stacklevel=2,
)
rtol = atol = _get_tol_from_less_precise(check_less_precise)
# instance validation
_check_isinstance(left, right, DataFrame)
if check_frame_type:
assert isinstance(left, type(right))
# assert_class_equal(left, right, obj=obj)
# shape comparison
if left.shape != right.shape:
raise_assert_detail(
obj, f"{obj} shape mismatch", f"{repr(left.shape)}", f"{repr(right.shape)}"
)
if check_flags:
assert left.flags == right.flags, f"{repr(left.flags)} != {repr(right.flags)}"
# index comparison
assert_index_equal(
left.index,
right.index,
exact=check_index_type,
check_names=check_names,
check_exact=check_exact,
check_categorical=check_categorical,
check_order=not check_like,
rtol=rtol,
atol=atol,
obj=f"{obj}.index",
)
# column comparison
assert_index_equal(
left.columns,
right.columns,
exact=check_column_type,
check_names=check_names,
check_exact=check_exact,
check_categorical=check_categorical,
check_order=not check_like,
rtol=rtol,
atol=atol,
obj=f"{obj}.columns",
)
if check_like:
left, right = left.reindex_like(right), right
# compare by blocks
if by_blocks:
rblocks = right._to_dict_of_blocks()
lblocks = left._to_dict_of_blocks()
for dtype in list(set(list(lblocks.keys()) + list(rblocks.keys()))):
assert dtype in lblocks
assert dtype in rblocks
assert_frame_equal(
lblocks[dtype], rblocks[dtype], check_dtype=check_dtype, obj=obj
)
# compare by columns
else:
for i, col in enumerate(left.columns):
assert col in right
lcol = left.iloc[:, i]
rcol = right.iloc[:, i]
assert_series_equal(
lcol,
rcol,
check_dtype=check_dtype,
check_index_type=check_index_type,
check_exact=check_exact,
check_names=check_names,
check_datetimelike_compat=check_datetimelike_compat,
check_categorical=check_categorical,
check_freq=check_freq,
obj=f'{obj}.iloc[:, {i}] (column name="{col}")',
rtol=rtol,
atol=atol,
)
def assert_equal(left, right, **kwargs):
"""
Wrapper for tm.assert_*_equal to dispatch to the appropriate test function.
Parameters
----------
left, right : Index, Series, DataFrame, ExtensionArray, or np.ndarray
The two items to be compared.
**kwargs
All keyword arguments are passed through to the underlying assert method.
"""
__tracebackhide__ = True
if isinstance(left, pd.Index):
assert_index_equal(left, right, **kwargs)
if isinstance(left, (pd.DatetimeIndex, pd.TimedeltaIndex)):
assert left.freq == right.freq, (left.freq, right.freq)
elif isinstance(left, pd.Series):
assert_series_equal(left, right, **kwargs)
elif isinstance(left, pd.DataFrame):
assert_frame_equal(left, right, **kwargs)
elif isinstance(left, IntervalArray):
assert_interval_array_equal(left, right, **kwargs)
elif isinstance(left, PeriodArray):
assert_period_array_equal(left, right, **kwargs)
elif isinstance(left, DatetimeArray):
assert_datetime_array_equal(left, right, **kwargs)
elif isinstance(left, TimedeltaArray):
assert_timedelta_array_equal(left, right, **kwargs)
elif isinstance(left, ExtensionArray):
assert_extension_array_equal(left, right, **kwargs)
elif isinstance(left, np.ndarray):
assert_numpy_array_equal(left, right, **kwargs)
elif isinstance(left, str):
assert kwargs == {}
assert left == right
else:
raise NotImplementedError(type(left))
def box_expected(expected, box_cls, transpose=True):
"""
Helper function to wrap the expected output of a test in a given box_class.
Parameters
----------
expected : np.ndarray, Index, Series
box_cls : {Index, Series, DataFrame}
Returns
-------
subclass of box_cls
"""
if box_cls is pd.array:
expected = pd.array(expected)
elif box_cls is pd.Index:
expected = pd.Index(expected)
elif box_cls is pd.Series:
expected = pd.Series(expected)
elif box_cls is pd.DataFrame:
expected = pd.Series(expected).to_frame()
if transpose:
# for vector operations, we need a DataFrame to be a single-row,
# not a single-column, in order to operate against non-DataFrame
# vectors of the same length.
expected = expected.T
elif box_cls is PeriodArray:
# the PeriodArray constructor is not as flexible as period_array
expected = period_array(expected)
elif box_cls is DatetimeArray:
expected = DatetimeArray(expected)
elif box_cls is TimedeltaArray:
expected = TimedeltaArray(expected)
elif box_cls is np.ndarray:
expected = np.array(expected)
elif box_cls is to_array:
expected = to_array(expected)
else:
raise NotImplementedError(box_cls)
return expected
def to_array(obj):
# temporary implementation until we get pd.array in place
dtype = getattr(obj, "dtype", None)
if is_period_dtype(dtype):
return period_array(obj)
elif is_datetime64_dtype(dtype) or is_datetime64tz_dtype(dtype):
return DatetimeArray._from_sequence(obj)
elif is_timedelta64_dtype(dtype):
return TimedeltaArray._from_sequence(obj)
else:
return np.array(obj)
# -----------------------------------------------------------------------------
# Sparse
def assert_sp_array_equal(left, right):
"""
Check that the left and right SparseArray are equal.
Parameters
----------
left : SparseArray
right : SparseArray
"""
_check_isinstance(left, right, pd.arrays.SparseArray)
assert_numpy_array_equal(left.sp_values, right.sp_values)
# SparseIndex comparison
assert isinstance(left.sp_index, pd._libs.sparse.SparseIndex)
assert isinstance(right.sp_index, pd._libs.sparse.SparseIndex)
left_index = left.sp_index
right_index = right.sp_index
if not left_index.equals(right_index):
raise_assert_detail(
"SparseArray.index", "index are not equal", left_index, right_index
)
else:
# Just ensure a
pass
assert_attr_equal("fill_value", left, right)
assert_attr_equal("dtype", left, right)
assert_numpy_array_equal(left.to_dense(), right.to_dense())
# -----------------------------------------------------------------------------
# Others
def assert_contains_all(iterable, dic):
for k in iterable:
assert k in dic, f"Did not contain item: {repr(k)}"
def assert_copy(iter1, iter2, **eql_kwargs):
"""
iter1, iter2: iterables that produce elements
comparable with assert_almost_equal
Checks that the elements are equal, but not
the same object. (Does not check that items
in sequences are also not the same object)
"""
for elem1, elem2 in zip(iter1, iter2):
assert_almost_equal(elem1, elem2, **eql_kwargs)
msg = (
f"Expected object {repr(type(elem1))} and object {repr(type(elem2))} to be "
"different objects, but they were the same object."
)
assert elem1 is not elem2, msg
def is_extension_array_dtype_and_needs_i8_conversion(left_dtype, right_dtype) -> bool:
"""
Checks that we have the combination of an ExtensionArraydtype and
a dtype that should be converted to int64
Returns
-------
bool
Related to issue #37609
"""
return is_extension_array_dtype(left_dtype) and needs_i8_conversion(right_dtype)
def getCols(k):
return string.ascii_uppercase[:k]
# make index
def makeStringIndex(k=10, name=None):
return Index(rands_array(nchars=10, size=k), name=name)
def makeUnicodeIndex(k=10, name=None):
return Index(randu_array(nchars=10, size=k), name=name)
def makeCategoricalIndex(k=10, n=3, name=None, **kwargs):
""" make a length k index or n categories """
x = rands_array(nchars=4, size=n)
return CategoricalIndex(
Categorical.from_codes(np.arange(k) % n, categories=x), name=name, **kwargs
)
def makeIntervalIndex(k=10, name=None, **kwargs):
""" make a length k IntervalIndex """
x = np.linspace(0, 100, num=(k + 1))
return IntervalIndex.from_breaks(x, name=name, **kwargs)
def makeBoolIndex(k=10, name=None):
if k == 1:
return Index([True], name=name)
elif k == 2:
return Index([False, True], name=name)
return Index([False, True] + [False] * (k - 2), name=name)
def makeIntIndex(k=10, name=None):
return Index(list(range(k)), name=name)
def makeUIntIndex(k=10, name=None):
return Index([2 ** 63 + i for i in range(k)], name=name)
def makeRangeIndex(k=10, name=None, **kwargs):
return RangeIndex(0, k, 1, name=name, **kwargs)
def makeFloatIndex(k=10, name=None):
values = sorted(np.random.random_sample(k)) - np.random.random_sample(1)
return Index(values * (10 ** np.random.randint(0, 9)), name=name)
def makeDateIndex(k=10, freq="B", name=None, **kwargs):
dt = datetime(2000, 1, 1)
dr = bdate_range(dt, periods=k, freq=freq, name=name)
return DatetimeIndex(dr, name=name, **kwargs)
def makeTimedeltaIndex(k=10, freq="D", name=None, **kwargs):
return pd.timedelta_range(start="1 day", periods=k, freq=freq, name=name, **kwargs)
def makePeriodIndex(k=10, name=None, **kwargs):
dt = datetime(2000, 1, 1)
return pd.period_range(start=dt, periods=k, freq="B", name=name, **kwargs)
def makeMultiIndex(k=10, names=None, **kwargs):
return MultiIndex.from_product((("foo", "bar"), (1, 2)), names=names, **kwargs)
_names = [
"Alice",
"Bob",
"Charlie",
"Dan",
"Edith",
"Frank",
"George",
"Hannah",
"Ingrid",
"Jerry",
"Kevin",
"Laura",
"Michael",
"Norbert",
"Oliver",
"Patricia",
"Quinn",
"Ray",
"Sarah",
"Tim",
"Ursula",
"Victor",
"Wendy",
"Xavier",
"Yvonne",
"Zelda",
]
def _make_timeseries(start="2000-01-01", end="2000-12-31", freq="1D", seed=None):
"""
Make a DataFrame with a DatetimeIndex
Parameters
----------
start : str or Timestamp, default "2000-01-01"
The start of the index. Passed to date_range with `freq`.
end : str or Timestamp, default "2000-12-31"
The end of the index. Passed to date_range with `freq`.
freq : str or Freq
The frequency to use for the DatetimeIndex
seed : int, optional
The random state seed.
* name : object dtype with string names
* id : int dtype with
* x, y : float dtype
Examples
--------
>>> _make_timeseries()
id name x y
timestamp
2000-01-01 982 Frank 0.031261 0.986727
2000-01-02 1025 Edith -0.086358 -0.032920
2000-01-03 982 Edith 0.473177 0.298654
2000-01-04 1009 Sarah 0.534344 -0.750377
2000-01-05 963 Zelda -0.271573 0.054424
... ... ... ... ...
2000-12-27 980 Ingrid -0.132333 -0.422195
2000-12-28 972 Frank -0.376007 -0.298687
2000-12-29 1009 Ursula -0.865047 -0.503133
2000-12-30 1000 Hannah -0.063757 -0.507336
2000-12-31 972 Tim -0.869120 0.531685
"""
index = pd.date_range(start=start, end=end, freq=freq, name="timestamp")
n = len(index)
state = np.random.RandomState(seed)
columns = {
"name": state.choice(_names, size=n),
"id": state.poisson(1000, size=n),
"x": state.rand(n) * 2 - 1,
"y": state.rand(n) * 2 - 1,
}
df = pd.DataFrame(columns, index=index, columns=sorted(columns))
if df.index[-1] == end:
df = df.iloc[:-1]
return df
def index_subclass_makers_generator():
make_index_funcs = [
makeDateIndex,
makePeriodIndex,
makeTimedeltaIndex,
makeRangeIndex,
makeIntervalIndex,
makeCategoricalIndex,
makeMultiIndex,
]
yield from make_index_funcs
def all_timeseries_index_generator(k=10):
"""
Generator which can be iterated over to get instances of all the classes
which represent time-series.
Parameters
----------
k: length of each of the index instances
"""
make_index_funcs = [makeDateIndex, makePeriodIndex, makeTimedeltaIndex]
for make_index_func in make_index_funcs:
# pandas\_testing.py:1986: error: Cannot call function of unknown type
yield make_index_func(k=k) # type: ignore[operator]
# make series
def makeFloatSeries(name=None):
index = makeStringIndex(_N)
return Series(randn(_N), index=index, name=name)
def makeStringSeries(name=None):
index = makeStringIndex(_N)
return Series(randn(_N), index=index, name=name)
def makeObjectSeries(name=None):
data = makeStringIndex(_N)
data = Index(data, dtype=object)
index = makeStringIndex(_N)
return Series(data, index=index, name=name)
def getSeriesData():
index = makeStringIndex(_N)
return {c: Series(randn(_N), index=index) for c in getCols(_K)}
def makeTimeSeries(nper=None, freq="B", name=None):
if nper is None:
nper = _N
return Series(randn(nper), index=makeDateIndex(nper, freq=freq), name=name)
def makePeriodSeries(nper=None, name=None):
if nper is None:
nper = _N
return Series(randn(nper), index=makePeriodIndex(nper), name=name)
def getTimeSeriesData(nper=None, freq="B"):
return {c: makeTimeSeries(nper, freq) for c in getCols(_K)}
def getPeriodData(nper=None):
return {c: makePeriodSeries(nper) for c in getCols(_K)}
# make frame
def makeTimeDataFrame(nper=None, freq="B"):
data = getTimeSeriesData(nper, freq)
return DataFrame(data)
def makeDataFrame():
data = getSeriesData()
return DataFrame(data)
def getMixedTypeDict():
index = Index(["a", "b", "c", "d", "e"])
data = {
"A": [0.0, 1.0, 2.0, 3.0, 4.0],
"B": [0.0, 1.0, 0.0, 1.0, 0.0],
"C": ["foo1", "foo2", "foo3", "foo4", "foo5"],
"D": bdate_range("1/1/2009", periods=5),
}
return index, data
def makeMixedDataFrame():
return DataFrame(getMixedTypeDict()[1])
def makePeriodFrame(nper=None):
data = getPeriodData(nper)
return DataFrame(data)
def makeCustomIndex(
nentries, nlevels, prefix="#", names=False, ndupe_l=None, idx_type=None
):
"""
Create an index/multindex with given dimensions, levels, names, etc'
nentries - number of entries in index
nlevels - number of levels (> 1 produces multindex)
prefix - a string prefix for labels
names - (Optional), bool or list of strings. if True will use default
names, if false will use no names, if a list is given, the name of
each level in the index will be taken from the list.
ndupe_l - (Optional), list of ints, the number of rows for which the
label will repeated at the corresponding level, you can specify just
the first few, the rest will use the default ndupe_l of 1.
len(ndupe_l) <= nlevels.
idx_type - "i"/"f"/"s"/"u"/"dt"/"p"/"td".
If idx_type is not None, `idx_nlevels` must be 1.
"i"/"f" creates an integer/float index,
"s"/"u" creates a string/unicode index
"dt" create a datetime index.
"td" create a datetime index.
if unspecified, string labels will be generated.
"""
if ndupe_l is None:
ndupe_l = [1] * nlevels
assert is_sequence(ndupe_l) and len(ndupe_l) <= nlevels
assert names is None or names is False or names is True or len(names) is nlevels
assert idx_type is None or (
idx_type in ("i", "f", "s", "u", "dt", "p", "td") and nlevels == 1
)
if names is True:
# build default names
names = [prefix + str(i) for i in range(nlevels)]
if names is False:
# pass None to index constructor for no name
names = None
# make singleton case uniform
if isinstance(names, str) and nlevels == 1:
names = [names]
# specific 1D index type requested?
idx_func = {
"i": makeIntIndex,
"f": makeFloatIndex,
"s": makeStringIndex,
"u": makeUnicodeIndex,
"dt": makeDateIndex,
"td": makeTimedeltaIndex,
"p": makePeriodIndex,
}.get(idx_type)
if idx_func:
# pandas\_testing.py:2120: error: Cannot call function of unknown type
idx = idx_func(nentries) # type: ignore[operator]
# but we need to fill in the name
if names:
idx.name = names[0]
return idx
elif idx_type is not None:
raise ValueError(
f"{repr(idx_type)} is not a legal value for `idx_type`, "
"use 'i'/'f'/'s'/'u'/'dt'/'p'/'td'."
)
if len(ndupe_l) < nlevels:
ndupe_l.extend([1] * (nlevels - len(ndupe_l)))
assert len(ndupe_l) == nlevels
assert all(x > 0 for x in ndupe_l)
tuples = []
for i in range(nlevels):
def keyfunc(x):
import re
numeric_tuple = re.sub(r"[^\d_]_?", "", x).split("_")
return [int(num) for num in numeric_tuple]
# build a list of lists to create the index from
div_factor = nentries // ndupe_l[i] + 1
# pandas\_testing.py:2148: error: Need type annotation for 'cnt'
cnt = Counter() # type: ignore[var-annotated]
for j in range(div_factor):
label = f"{prefix}_l{i}_g{j}"
cnt[label] = ndupe_l[i]
# cute Counter trick
result = sorted(cnt.elements(), key=keyfunc)[:nentries]
tuples.append(result)
tuples = list(zip(*tuples))
# convert tuples to index
if nentries == 1:
# we have a single level of tuples, i.e. a regular Index
index = Index(tuples[0], name=names[0])
elif nlevels == 1:
name = None if names is None else names[0]
index = Index((x[0] for x in tuples), name=name)
else:
index = MultiIndex.from_tuples(tuples, names=names)
return index
def makeCustomDataframe(
nrows,
ncols,
c_idx_names=True,
r_idx_names=True,
c_idx_nlevels=1,
r_idx_nlevels=1,
data_gen_f=None,
c_ndupe_l=None,
r_ndupe_l=None,
dtype=None,
c_idx_type=None,
r_idx_type=None,
):
"""
Create a DataFrame using supplied parameters.
Parameters
----------
nrows, ncols - number of data rows/cols
c_idx_names, idx_names - False/True/list of strings, yields No names ,
default names or uses the provided names for the levels of the
corresponding index. You can provide a single string when
c_idx_nlevels ==1.
c_idx_nlevels - number of levels in columns index. > 1 will yield MultiIndex
r_idx_nlevels - number of levels in rows index. > 1 will yield MultiIndex
data_gen_f - a function f(row,col) which return the data value
at that position, the default generator used yields values of the form
"RxCy" based on position.
c_ndupe_l, r_ndupe_l - list of integers, determines the number
of duplicates for each label at a given level of the corresponding
index. The default `None` value produces a multiplicity of 1 across
all levels, i.e. a unique index. Will accept a partial list of length
N < idx_nlevels, for just the first N levels. If ndupe doesn't divide
nrows/ncol, the last label might have lower multiplicity.
dtype - passed to the DataFrame constructor as is, in case you wish to
have more control in conjunction with a custom `data_gen_f`
r_idx_type, c_idx_type - "i"/"f"/"s"/"u"/"dt"/"td".
If idx_type is not None, `idx_nlevels` must be 1.
"i"/"f" creates an integer/float index,
"s"/"u" creates a string/unicode index
"dt" create a datetime index.
"td" create a timedelta index.
if unspecified, string labels will be generated.
Examples
--------
# 5 row, 3 columns, default names on both, single index on both axis
>> makeCustomDataframe(5,3)
# make the data a random int between 1 and 100
>> mkdf(5,3,data_gen_f=lambda r,c:randint(1,100))
# 2-level multiindex on rows with each label duplicated
# twice on first level, default names on both axis, single
# index on both axis
>> a=makeCustomDataframe(5,3,r_idx_nlevels=2,r_ndupe_l=[2])
# DatetimeIndex on row, index with unicode labels on columns
# no names on either axis
>> a=makeCustomDataframe(5,3,c_idx_names=False,r_idx_names=False,
r_idx_type="dt",c_idx_type="u")
# 4-level multindex on rows with names provided, 2-level multindex
# on columns with default labels and default names.
>> a=makeCustomDataframe(5,3,r_idx_nlevels=4,
r_idx_names=["FEE","FI","FO","FAM"],
c_idx_nlevels=2)
>> a=mkdf(5,3,r_idx_nlevels=2,c_idx_nlevels=4)
"""
assert c_idx_nlevels > 0
assert r_idx_nlevels > 0
assert r_idx_type is None or (
r_idx_type in ("i", "f", "s", "u", "dt", "p", "td") and r_idx_nlevels == 1
)
assert c_idx_type is None or (
c_idx_type in ("i", "f", "s", "u", "dt", "p", "td") and c_idx_nlevels == 1
)
columns = makeCustomIndex(
ncols,
nlevels=c_idx_nlevels,
prefix="C",
names=c_idx_names,
ndupe_l=c_ndupe_l,
idx_type=c_idx_type,
)
index = makeCustomIndex(
nrows,
nlevels=r_idx_nlevels,
prefix="R",
names=r_idx_names,
ndupe_l=r_ndupe_l,
idx_type=r_idx_type,
)
# by default, generate data based on location
if data_gen_f is None:
data_gen_f = lambda r, c: f"R{r}C{c}"
data = [[data_gen_f(r, c) for c in range(ncols)] for r in range(nrows)]
return DataFrame(data, index, columns, dtype=dtype)
def _create_missing_idx(nrows, ncols, density, random_state=None):
if random_state is None:
random_state = np.random
else:
random_state = np.random.RandomState(random_state)
# below is cribbed from scipy.sparse
size = int(np.round((1 - density) * nrows * ncols))
# generate a few more to ensure unique values
min_rows = 5
fac = 1.02
extra_size = min(size + min_rows, fac * size)
def _gen_unique_rand(rng, _extra_size):
ind = rng.rand(int(_extra_size))
return np.unique(np.floor(ind * nrows * ncols))[:size]
ind = _gen_unique_rand(random_state, extra_size)
while ind.size < size:
extra_size *= 1.05
ind = _gen_unique_rand(random_state, extra_size)
j = np.floor(ind * 1.0 / nrows).astype(int)
i = (ind - j * nrows).astype(int)
return i.tolist(), j.tolist()
def makeMissingDataframe(density=0.9, random_state=None):
df = makeDataFrame()
# pandas\_testing.py:2306: error: "_create_missing_idx" gets multiple
# values for keyword argument "density" [misc]
# pandas\_testing.py:2306: error: "_create_missing_idx" gets multiple
# values for keyword argument "random_state" [misc]
i, j = _create_missing_idx( # type: ignore[misc]
*df.shape, density=density, random_state=random_state
)
df.values[i, j] = np.nan
return df
def optional_args(decorator):
"""
allows a decorator to take optional positional and keyword arguments.
Assumes that taking a single, callable, positional argument means that
it is decorating a function, i.e. something like this::
@my_decorator
def function(): pass
Calls decorator with decorator(f, *args, **kwargs)
"""
@wraps(decorator)
def wrapper(*args, **kwargs):
def dec(f):
return decorator(f, *args, **kwargs)
is_decorating = not kwargs and len(args) == 1 and callable(args[0])
if is_decorating:
f = args[0]
# pandas\_testing.py:2331: error: Incompatible types in assignment
# (expression has type "List[<nothing>]", variable has type
# "Tuple[Any, ...]")
args = [] # type: ignore[assignment]
return dec(f)
else:
return dec
return wrapper
# skip tests on exceptions with this message
_network_error_messages = (
# 'urlopen error timed out',
# 'timeout: timed out',
# 'socket.timeout: timed out',
"timed out",
"Server Hangup",
"HTTP Error 503: Service Unavailable",
"502: Proxy Error",
"HTTP Error 502: internal error",
"HTTP Error 502",
"HTTP Error 503",
"HTTP Error 403",
"HTTP Error 400",
"Temporary failure in name resolution",
"Name or service not known",
"Connection refused",
"certificate verify",
)
# or this e.errno/e.reason.errno
_network_errno_vals = (
101, # Network is unreachable
111, # Connection refused
110, # Connection timed out
104, # Connection reset Error
54, # Connection reset by peer
60, # urllib.error.URLError: [Errno 60] Connection timed out
)
# Both of the above shouldn't mask real issues such as 404's
# or refused connections (changed DNS).
# But some tests (test_data yahoo) contact incredibly flakey
# servers.
# and conditionally raise on exception types in _get_default_network_errors
def _get_default_network_errors():
# Lazy import for http.client because it imports many things from the stdlib
import http.client
return (IOError, http.client.HTTPException, TimeoutError)
def can_connect(url, error_classes=None):
"""
Try to connect to the given url. True if succeeds, False if IOError
raised
Parameters
----------
url : basestring
The URL to try to connect to
Returns
-------
connectable : bool
Return True if no IOError (unable to connect) or URLError (bad url) was
raised
"""
if error_classes is None:
error_classes = _get_default_network_errors()
try:
with urlopen(url):
pass
except error_classes:
return False
else:
return True
@optional_args
def network(
t,
url="https://www.google.com",
raise_on_error=_RAISE_NETWORK_ERROR_DEFAULT,
check_before_test=False,
error_classes=None,
skip_errnos=_network_errno_vals,
_skip_on_messages=_network_error_messages,
):
"""
Label a test as requiring network connection and, if an error is
encountered, only raise if it does not find a network connection.
In comparison to ``network``, this assumes an added contract to your test:
you must assert that, under normal conditions, your test will ONLY fail if
it does not have network connectivity.
You can call this in 3 ways: as a standard decorator, with keyword
arguments, or with a positional argument that is the url to check.
Parameters
----------
t : callable
The test requiring network connectivity.
url : path
The url to test via ``pandas.io.common.urlopen`` to check
for connectivity. Defaults to 'https://www.google.com'.
raise_on_error : bool
If True, never catches errors.
check_before_test : bool
If True, checks connectivity before running the test case.
error_classes : tuple or Exception
error classes to ignore. If not in ``error_classes``, raises the error.
defaults to IOError. Be careful about changing the error classes here.
skip_errnos : iterable of int
Any exception that has .errno or .reason.erno set to one
of these values will be skipped with an appropriate
message.
_skip_on_messages: iterable of string
any exception e for which one of the strings is
a substring of str(e) will be skipped with an appropriate
message. Intended to suppress errors where an errno isn't available.
Notes
-----
* ``raise_on_error`` supersedes ``check_before_test``
Returns
-------
t : callable
The decorated test ``t``, with checks for connectivity errors.
Example
-------
Tests decorated with @network will fail if it's possible to make a network
connection to another URL (defaults to google.com)::
>>> from pandas._testing import network
>>> from pandas.io.common import urlopen
>>> @network
... def test_network():
... with urlopen("rabbit://bonanza.com"):
... pass
Traceback
...
URLError: <urlopen error unknown url type: rabit>
You can specify alternative URLs::
>>> @network("https://www.yahoo.com")
... def test_something_with_yahoo():
... raise IOError("Failure Message")
>>> test_something_with_yahoo()
Traceback (most recent call last):
...
IOError: Failure Message
If you set check_before_test, it will check the url first and not run the
test on failure::
>>> @network("failing://url.blaher", check_before_test=True)
... def test_something():
... print("I ran!")
... raise ValueError("Failure")
>>> test_something()
Traceback (most recent call last):
...
Errors not related to networking will always be raised.
"""
from pytest import skip
if error_classes is None:
error_classes = _get_default_network_errors()
t.network = True
@wraps(t)
def wrapper(*args, **kwargs):
if (
check_before_test
and not raise_on_error
and not can_connect(url, error_classes)
):
skip()
try:
return t(*args, **kwargs)
except Exception as err:
errno = getattr(err, "errno", None)
if not errno and hasattr(errno, "reason"):
# pandas\_testing.py:2521: error: "Exception" has no attribute
# "reason"
errno = getattr(err.reason, "errno", None) # type: ignore[attr-defined]
if errno in skip_errnos:
skip(f"Skipping test due to known errno and error {err}")
e_str = str(err)
if any(m.lower() in e_str.lower() for m in _skip_on_messages):
skip(
f"Skipping test because exception message is known and error {err}"
)
if not isinstance(err, error_classes):
raise
if raise_on_error or can_connect(url, error_classes):
raise
else:
skip(f"Skipping test due to lack of connectivity and error {err}")
return wrapper
with_connectivity_check = network
@contextmanager
def assert_produces_warning(
expected_warning: Optional[Union[Type[Warning], bool]] = Warning,
filter_level="always",
check_stacklevel: bool = True,
raise_on_extra_warnings: bool = True,
match: Optional[str] = None,
):
"""
Context manager for running code expected to either raise a specific
warning, or not raise any warnings. Verifies that the code raises the
expected warning, and that it does not raise any other unexpected
warnings. It is basically a wrapper around ``warnings.catch_warnings``.
Parameters
----------
expected_warning : {Warning, False, None}, default Warning
The type of Exception raised. ``exception.Warning`` is the base
class for all warnings. To check that no warning is returned,
specify ``False`` or ``None``.
filter_level : str or None, default "always"
Specifies whether warnings are ignored, displayed, or turned
into errors.
Valid values are:
* "error" - turns matching warnings into exceptions
* "ignore" - discard the warning
* "always" - always emit a warning
* "default" - print the warning the first time it is generated
from each location
* "module" - print the warning the first time it is generated
from each module
* "once" - print the warning the first time it is generated
check_stacklevel : bool, default True
If True, displays the line that called the function containing
the warning to show were the function is called. Otherwise, the
line that implements the function is displayed.
raise_on_extra_warnings : bool, default True
Whether extra warnings not of the type `expected_warning` should
cause the test to fail.
match : str, optional
Match warning message.
Examples
--------
>>> import warnings
>>> with assert_produces_warning():
... warnings.warn(UserWarning())
...
>>> with assert_produces_warning(False):
... warnings.warn(RuntimeWarning())
...
Traceback (most recent call last):
...
AssertionError: Caused unexpected warning(s): ['RuntimeWarning'].
>>> with assert_produces_warning(UserWarning):
... warnings.warn(RuntimeWarning())
Traceback (most recent call last):
...
AssertionError: Did not see expected warning of class 'UserWarning'.
..warn:: This is *not* thread-safe.
"""
__tracebackhide__ = True
with warnings.catch_warnings(record=True) as w:
saw_warning = False
matched_message = False
warnings.simplefilter(filter_level)
yield w
extra_warnings = []
for actual_warning in w:
if not expected_warning:
continue
expected_warning = cast(Type[Warning], expected_warning)
if issubclass(actual_warning.category, expected_warning):
saw_warning = True
if check_stacklevel and issubclass(
actual_warning.category, (FutureWarning, DeprecationWarning)
):
_assert_raised_with_correct_stacklevel(actual_warning)
if match is not None and re.search(match, str(actual_warning.message)):
matched_message = True
else:
extra_warnings.append(
(
actual_warning.category.__name__,
actual_warning.message,
actual_warning.filename,
actual_warning.lineno,
)
)
if expected_warning:
expected_warning = cast(Type[Warning], expected_warning)
if not saw_warning:
raise AssertionError(
f"Did not see expected warning of class "
f"{repr(expected_warning.__name__)}"
)
if match and not matched_message:
raise AssertionError(
f"Did not see warning {repr(expected_warning.__name__)} "
f"matching {match}"
)
if raise_on_extra_warnings and extra_warnings:
raise AssertionError(
f"Caused unexpected warning(s): {repr(extra_warnings)}"
)
def _assert_raised_with_correct_stacklevel(
actual_warning: warnings.WarningMessage,
) -> None:
from inspect import getframeinfo, stack
caller = getframeinfo(stack()[3][0])
msg = (
"Warning not set with correct stacklevel. "
f"File where warning is raised: {actual_warning.filename} != "
f"{caller.filename}. Warning message: {actual_warning.message}"
)
assert actual_warning.filename == caller.filename, msg
class RNGContext:
"""
Context manager to set the numpy random number generator speed. Returns
to the original value upon exiting the context manager.
Parameters
----------
seed : int
Seed for numpy.random.seed
Examples
--------
with RNGContext(42):
np.random.randn()
"""
def __init__(self, seed):
self.seed = seed
def __enter__(self):
self.start_state = np.random.get_state()
np.random.seed(self.seed)
def __exit__(self, exc_type, exc_value, traceback):
np.random.set_state(self.start_state)
@contextmanager
def with_csv_dialect(name, **kwargs):
"""
Context manager to temporarily register a CSV dialect for parsing CSV.
Parameters
----------
name : str
The name of the dialect.
kwargs : mapping
The parameters for the dialect.
Raises
------
ValueError : the name of the dialect conflicts with a builtin one.
See Also
--------
csv : Python's CSV library.
"""
import csv
_BUILTIN_DIALECTS = {"excel", "excel-tab", "unix"}
if name in _BUILTIN_DIALECTS:
raise ValueError("Cannot override builtin dialect.")
csv.register_dialect(name, **kwargs)
yield
csv.unregister_dialect(name)
@contextmanager
def use_numexpr(use, min_elements=None):
from pandas.core.computation import expressions as expr
if min_elements is None:
min_elements = expr._MIN_ELEMENTS
olduse = expr.USE_NUMEXPR
oldmin = expr._MIN_ELEMENTS
expr.set_use_numexpr(use)
expr._MIN_ELEMENTS = min_elements
yield
expr._MIN_ELEMENTS = oldmin
expr.set_use_numexpr(olduse)
def test_parallel(num_threads=2, kwargs_list=None):
"""
Decorator to run the same function multiple times in parallel.
Parameters
----------
num_threads : int, optional
The number of times the function is run in parallel.
kwargs_list : list of dicts, optional
The list of kwargs to update original
function kwargs on different threads.
Notes
-----
This decorator does not pass the return value of the decorated function.
Original from scikit-image:
https://github.com/scikit-image/scikit-image/pull/1519
"""
assert num_threads > 0
has_kwargs_list = kwargs_list is not None
if has_kwargs_list:
assert len(kwargs_list) == num_threads
import threading
def wrapper(func):
@wraps(func)
def inner(*args, **kwargs):
if has_kwargs_list:
update_kwargs = lambda i: dict(kwargs, **kwargs_list[i])
else:
update_kwargs = lambda i: kwargs
threads = []
for i in range(num_threads):
updated_kwargs = update_kwargs(i)
thread = threading.Thread(target=func, args=args, kwargs=updated_kwargs)
threads.append(thread)
for thread in threads:
thread.start()
for thread in threads:
thread.join()
return inner
return wrapper
class SubclassedSeries(Series):
_metadata = ["testattr", "name"]
@property
def _constructor(self):
return SubclassedSeries
@property
def _constructor_expanddim(self):
return SubclassedDataFrame
class SubclassedDataFrame(DataFrame):
_metadata = ["testattr"]
@property
def _constructor(self):
return SubclassedDataFrame
@property
def _constructor_sliced(self):
return SubclassedSeries
class SubclassedCategorical(Categorical):
@property
def _constructor(self):
return SubclassedCategorical
@contextmanager
def set_timezone(tz: str):
"""
Context manager for temporarily setting a timezone.
Parameters
----------
tz : str
A string representing a valid timezone.
Examples
--------
>>> from datetime import datetime
>>> from dateutil.tz import tzlocal
>>> tzlocal().tzname(datetime.now())
'IST'
>>> with set_timezone('US/Eastern'):
... tzlocal().tzname(datetime.now())
...
'EDT'
"""
import os
import time
def setTZ(tz):
if tz is None:
try:
del os.environ["TZ"]
except KeyError:
pass
else:
os.environ["TZ"] = tz
time.tzset()
orig_tz = os.environ.get("TZ")
setTZ(tz)
try:
yield
finally:
setTZ(orig_tz)
def _make_skipna_wrapper(alternative, skipna_alternative=None):
"""
Create a function for calling on an array.
Parameters
----------
alternative : function
The function to be called on the array with no NaNs.
Only used when 'skipna_alternative' is None.
skipna_alternative : function
The function to be called on the original array
Returns
-------
function
"""
if skipna_alternative:
def skipna_wrapper(x):
return skipna_alternative(x.values)
else:
def skipna_wrapper(x):
nona = x.dropna()
if len(nona) == 0:
return np.nan
return alternative(nona)
return skipna_wrapper
def convert_rows_list_to_csv_str(rows_list: List[str]):
"""
Convert list of CSV rows to single CSV-formatted string for current OS.
This method is used for creating expected value of to_csv() method.
Parameters
----------
rows_list : List[str]
Each element represents the row of csv.
Returns
-------
str
Expected output of to_csv() in current OS.
"""
sep = os.linesep
return sep.join(rows_list) + sep
def external_error_raised(expected_exception: Type[Exception]) -> ContextManager:
"""
Helper function to mark pytest.raises that have an external error message.
Parameters
----------
expected_exception : Exception
Expected error to raise.
Returns
-------
Callable
Regular `pytest.raises` function with `match` equal to `None`.
"""
import pytest
return pytest.raises(expected_exception, match=None)
cython_table = pd.core.base.SelectionMixin._cython_table.items()
def get_cython_table_params(ndframe, func_names_and_expected):
"""
Combine frame, functions from SelectionMixin._cython_table
keys and expected result.
Parameters
----------
ndframe : DataFrame or Series
func_names_and_expected : Sequence of two items
The first item is a name of a NDFrame method ('sum', 'prod') etc.
The second item is the expected return value.
Returns
-------
list
List of three items (DataFrame, function, expected result)
"""
results = []
for func_name, expected in func_names_and_expected:
results.append((ndframe, func_name, expected))
results += [
(ndframe, func, expected)
for func, name in cython_table
if name == func_name
]
return results
def get_op_from_name(op_name: str) -> Callable:
"""
The operator function for a given op name.
Parameters
----------
op_name : string
The op name, in form of "add" or "__add__".
Returns
-------
function
A function performing the operation.
"""
short_opname = op_name.strip("_")
try:
op = getattr(operator, short_opname)
except AttributeError:
# Assume it is the reverse operator
rop = getattr(operator, short_opname[1:])
op = lambda x, y: rop(y, x)
return op